@misc{kossack_tidal_impacts_2024, author={Kossack, J.,Mathis, M.,Daewel, U.,Liu, F.,Demir, K.T.,Thomas, H.,Schrum, C.}, title={Tidal impacts on air-sea CO2 exchange on the North-West European Shelf}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2024.1406896}, abstract = {Tidal forcing is a dominant physical forcing mechanism on the Northwest European Shelf (NWES) that regulates the mixing-stratification status of the water column and thus acts as a major control for biological productivity and air-sea CO2 exchange. Tides further influence the marine carbon cycle on the shelf by affecting benthic-pelagic coupling, vertical mixing and the large-scale residual circulation. The cumulative tidal impact on oceanic uptake of atmospheric CO2 on the NWES, however, remains largely unexplored. We use a coupled physical-biogeochemical ocean model to gain quantitative understanding of the tidal impacts on the air-sea CO2 exchange of the NWES by comparing hindcast simulations with and without tidal forcing. Our results show that tidal forcing weakens the annual oceanic CO2 uptake on the NWES by 0.15 Tmol C yr−1, corresponding to a ~13% stronger CO2 sink in the experiment without tidal forcing. The tide-induced increase in marine primary production demonstrated in earlier studies, which primarily enhances biological carbon fixation in shallow inner-shelf regions of the NWES, does not significantly affect net air-sea CO2 exchange. Instead, we find tidal mixing, tide-induced baroclinic circulation and the tidal impact on benthic-pelagic coupling to be dominant controls of air-sea CO2 exchange. Tidal mixing in the permanently mixed shelf regions accounts for the majority (~40%) of the weakening effect on CO2 uptake, while the modulation of water mass composition in the Celtic Sea by tide-induced baroclinic circulation reduces the uptake further (~33% of the difference in annual mean CO2 uptake). In terms of the shelf carbon budget, the tidal response of air-sea CO2 exchange is primarily mediated by changes to the pelagic DIC reservoir (~73%; −0.11 Tmol C yr−1). Tidal impacts on off-shelf carbon export to the North Atlantic only account for ~20% (−0.03 Tmol C yr−1) of the tidal impact on shelf CO2 uptake, and changes in sedimentation of particulate organic carbon account for the remaining ~7% (−0.01 Tmol C yr−1).}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2024.1406896} (DOI). Kossack, J.; Mathis, M.; Daewel, U.; Liu, F.; Demir, K.; Thomas, H.; Schrum, C.: Tidal impacts on air-sea CO2 exchange on the North-West European Shelf. Frontiers in Marine Science. 2024. vol. 11, 1406896. DOI: 10.3389/fmars.2024.1406896}} @misc{filbeedexter_carbon_export_2024, author={Filbee-Dexter, K.,Pessarrodona, A.,Pedersen, M.F.,Wernberg, T.,Duarte, C.M.,Assis, J.,Bekkby, T.,Burrows, M.T.,Carlson, D.F.,Gattuso, J.P.,Gundersen, H.,Hancke, K.,Krumhansl, K.A.,Kuwae, T.,Middelburg, J.J.,Moore, P.J.,Queirós, A.M.,Smale, D.A.,Sousa Pinto, I.,Suzuki, N.,Krause-Jensen, D.}, title={Carbon export from seaweed forests to deep ocean sinks}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1038/s41561-024-01449-7}, abstract = {The coastal ocean represents an important global carbon sink and is a focus for interventions to mitigate climate change and meet the Paris Agreement targets while supporting biodiversity and other ecosystem functions. However, the fate of the flux of carbon exported from seaweed forests—the world’s largest coastal vegetated ecosystem—is a key unknown in marine carbon budgets. Here we provide national and global estimates for seaweed-derived particulate carbon export below 200 m depth, which totalled 3–4% of the ocean carbon sink capacity. We characterized export using models of seaweed forest extent, production and decomposition, as well as shelf–open ocean water exchange. On average, 15% of seaweed production is estimated to be exported across the continental shelf, which equates to 56 TgC yr−1 (range: 10–170 TgC yr−1). Using modelled sequestration timescales below 200 m depth, we estimated that each year, 4–44 Tg seaweed-derived carbon could be sequestered for 100 years. Determining the full extent of seaweed carbon sequestration remains challenging, but critical to guide efforts to conserve seaweed forests, which are in decline globally. Our estimate does not include shelf burial and dissolved and refractory carbon pathways; still it highlights a relevant potential contribution of seaweed to natural carbon sinks.}, note = {Online available at: \url{https://doi.org/10.1038/s41561-024-01449-7} (DOI). Filbee-Dexter, K.; Pessarrodona, A.; Pedersen, M.; Wernberg, T.; Duarte, C.; Assis, J.; Bekkby, T.; Burrows, M.; Carlson, D.; Gattuso, J.; Gundersen, H.; Hancke, K.; Krumhansl, K.; Kuwae, T.; Middelburg, J.; Moore, P.; Queirós, A.; Smale, D.; Sousa Pinto, I.; Suzuki, N.; Krause-Jensen, D.: Carbon export from seaweed forests to deep ocean sinks. Nature Geoscience. 2024. vol. 17, 552–559. DOI: 10.1038/s41561-024-01449-7}} @misc{krishna_interactive_effects_2024, author={Krishna, S.,Peterson, V.,Listmann, L.,Hinners, J.}, title={Interactive effects of viral lysis and warming in a coastal ocean identified from an idealized ecosystem model}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.ecolmodel.2023.110550}, abstract = {Marine viruses have been identified as key players in biogeochemical cycles and in the termination of phytoplankton blooms; however, most biogeochemical models have yet to resolve viral dynamics. Here, we incorporate a viral component into a 1D ecosystem model to explore the influence of viruses on ecosystem dynamics under current and future climatic conditions in a coastal ocean. Virus-phytoplankton interactions and zooplankton grazing were mechanistically described through size-based contact rates. The model demonstrated that the presence of viruses increased nutrient retention in the upper water column. This corresponded to a reduction in phytoplankton biomass, production of dead organic matter and transfer of biomass to higher trophic levels. Viral presence played a key role in deeper water layers, near the thermocline. While warming alone reversed these trends, the combination of warming and viral presence enhanced the effect of viruses, indicative of synergistic interaction. Our results highlight the need of incorporating viral dynamics in the existing marine ecosystem models to better predict ecosystem responses to climate change.}, note = {Online available at: \url{https://doi.org/10.1016/j.ecolmodel.2023.110550} (DOI). Krishna, S.; Peterson, V.; Listmann, L.; Hinners, J.: Interactive effects of viral lysis and warming in a coastal ocean identified from an idealized ecosystem model. Ecological Modelling. 2024. vol. 487, 110550. DOI: 10.1016/j.ecolmodel.2023.110550}} @misc{minutolo_sedimentary_mud_2024, author={Minutolo, F.,Dähnke, K.,Metzke, M.,Holtappels, M.,Neumann, A.}, title={Sedimentary mud and phaeophytin-a are reliable predictors of oxygen consumption and nitrogen turnover in the southern North Sea}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.csr.2023.105161}, abstract = {Coastal systems are exposed to variable human uses and anthropogenic pressures, yet they provide valuable ecosystem services. Understanding the benthic processes in these systems is crucial for their effective management and conservation. This study investigates sediment characteristics as proxies for oxygen and nitrogen turnover in coastal, sandy, permeable sediments. We incubated sediment samples to quantify the turnover of ammonium and nitrate and analyzed various sediment properties to determine the most suitable predictors of sediment reactivity. Oxygen consumption rates and rates of ammonium and nitrate turnover strongly correlate with mud content and phaeophytin-a, which are identified as the best proxies for sediment reactivity. Ultimately, our data show that sediment nutrient recycling and turnover is intimately linked to spring primary production in the water column. In order to deduce reaction rates of oxygen, ammonium and nitrate from sediment properties, we provide linear regression coefficients and their uncertainties, enabling access to previous observations that would otherwise remain inaccessible due to missing data. This study provides insights for the development of benthic models that ultimately can be used to assess the impact of anthropogenic pressures on coastal systems. The findings have implications for nutrient management and monitoring in the German Bight, as an improved understanding of sediment reactivity allows for more appropriate and sustainable management and monitoring policies to be implemented.}, note = {Online available at: \url{https://doi.org/10.1016/j.csr.2023.105161} (DOI). Minutolo, F.; Dähnke, K.; Metzke, M.; Holtappels, M.; Neumann, A.: Sedimentary mud and phaeophytin-a are reliable predictors of oxygen consumption and nitrogen turnover in the southern North Sea. Continental Shelf Research. 2024. vol. 272, 105161. DOI: 10.1016/j.csr.2023.105161}} @misc{farrell_raised_water_2024, author={Farrell, E.M.,Neumann, A.,Beermann, J.,Wrede, A.}, title={Raised water temperature enhances benthopelagic links via intensified bioturbation and benthos-mediated nutrient cycling}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.7717/peerj.17047}, abstract = {Sediment reworking by benthic infauna, namely bioturbation, is of pivotal importance in expansive soft-sediment environments such as the Wadden Sea. Bioturbating fauna facilitate ecosystem functions such as bentho-pelagic coupling and sediment nutrient remineralization capacities. Yet, these benthic fauna are expected to be profoundly affected by current observed rising sea temperatures. In order to predict future changes in ecosystem functioning in soft-sediment environments like the Wadden Sea, knowledge on the underlying processes such as sediment reworking, is crucial. Here, we tested how temperature affects bioturbation and its associated ecosystem processes, such as benthic nutrient fluxes and sediment oxygen consumption, using luminophore tracers and sediment incubation cores. We used a controlled mesocosm experiment set-up with key Wadden Sea benthos species: the burrowing polychaetes Arenicola marina and Hediste diversicolor, the bivalve Cerastoderma edule, and the tube-building polychaete Lanice conchilega. The highest bioturbation rates were observed from A. marina, reaching up to 375 cm2yr−1; followed by H. diversicolor, with 124 cm2yr−1 being the peak bioturbation rate for the ragworm. Additionally, the sediment reworking activity of A. marina facilitated nearly double the amount of silicate efflux compared to any other species. Arenicola marina and H. diversicolor accordingly facilitated stronger nutrient effluxes under a warmer temperature than L. conchilega and C. edule. The oxygen uptake of A. marina and H. diversicolor within the sediment incubation cores was correspondingly enhanced with a higher temperature. Thus, increases in sea temperatures may initially be beneficial to ecosystem functioning in the Wadden Sea as faunal bioturbation is definitely expedited, leading to a tighter coupling between the sediment and overlying water column. The enhanced bioturbation activity, oxygen consumption, and facilitated nutrient effluxes from these invertebrates themselves, will aid in the ongoing high levels of primary productivity and organic matter production.}, note = {Online available at: \url{https://doi.org/10.7717/peerj.17047} (DOI). Farrell, E.; Neumann, A.; Beermann, J.; Wrede, A.: Raised water temperature enhances benthopelagic links via intensified bioturbation and benthos-mediated nutrient cycling. PeerJ. 2024. vol. 12, e17047. DOI: 10.7717/peerj.17047}} @misc{taucher_the_appendicularian_2024, author={Taucher, J.,Lechtenbörger, A.K.,Bouquet, J.M.,Spisla, C.,Boxhammer, T.,Minutolo, F.,Bach, L.T.,Lohbeck, K.T.,Sswat, M.,Dörner, I.,Ismar-Rebitz, S.M.H.,Thompson, E.M.,Riebesell, U.}, title={The appendicularian Oikopleura dioica can enhance carbon export in a high CO2 ocean}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1111/gcb.17020}, note = {Online available at: \url{https://doi.org/10.1111/gcb.17020} (DOI). Taucher, J.; Lechtenbörger, A.; Bouquet, J.; Spisla, C.; Boxhammer, T.; Minutolo, F.; Bach, L.; Lohbeck, K.; Sswat, M.; Dörner, I.; Ismar-Rebitz, S.; Thompson, E.; Riebesell, U.: The appendicularian Oikopleura dioica can enhance carbon export in a high CO2 ocean. Global Change Biology. 2024. vol. 30, no. 1, e17020. DOI: 10.1111/gcb.17020}} @misc{lomas_phytoplankton_optical_2024, author={Lomas, M.W.,Neeley, A.R.,Vandermeulen, R.,Mannino, A.,Thomas, C.,Novak, M.G.,Freeman, S.A.}, title={Phytoplankton optical fingerprint libraries for development of phytoplankton ocean color satellite products}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1038/s41597-024-03001-z}, abstract = {Phytoplankton respond to physical and hydrographic forcing on time and space scales up to and including those relevant to climate change. Quantifying changes in phytoplankton communities over these scales is essential for predicting ocean food resources, occurrences of harmful algal blooms, and carbon and other elemental cycles, among other predictions. However, one of the best tools for quantifying phytoplankton communities across relevant time and space scales, ocean color sensors, is constrained by its own spectral capabilities and availability of adequately vetted and relevant optical models. To address this later shortcoming, greater than fifty strains of phytoplankton, from a range of taxonomic lineages, geographic locations, and time in culture, alone and in mixtures, were grown to exponential and/or stationary phase for determination of hyperspectral UV-VIS absorption coefficients, multi-angle and multi-spectral backscatter coefficients, volume scattering functions, particle size distributions, pigment content, and fluorescence. The aim of this publication is to share these measurements to expedite their utilization in the development of new optical models for the next generation of ocean color satellites.}, note = {Online available at: \url{https://doi.org/10.1038/s41597-024-03001-z} (DOI). Lomas, M.; Neeley, A.; Vandermeulen, R.; Mannino, A.; Thomas, C.; Novak, M.; Freeman, S.: Phytoplankton optical fingerprint libraries for development of phytoplankton ocean color satellite products. Scientific Data. 2024. vol. 11, 168. DOI: 10.1038/s41597-024-03001-z}} @misc{olivier_late_summer_2024, author={Olivier, L.,Reverdin, G.,Boutin, J.,Iudicone, D.,Laxenaire, R.,Pesant, S.,Calil, P.H.R.,Horstmann, J.,Couet, D.,Erta, J.M.,Huber, P.,Sarmento, H.,Freire, A.,Koch-Larrouy, A.,Vergely, J.L.,Rousselot, P.,Speich, S.}, title={Late summer northwestward Amazon plume pathway under the action of the North Brazil Current rings}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.rse.2024.114165}, abstract = {The North Brazil Current (NBC) flows offshore of the mouth of the Amazon River and seasonally sheds anticyclonic rings (NBC rings) that propagate northwestward and interact with the Amazon River plume (ARP). Mesoscale features have a high temporal variability that is hard to monitor from current weekly and monthly sea surface salinity (SSS) satellite fields. Novel SSS fields with a higher temporal resolution analyzed together with satellite geostrophic currents, chlorophyll-a, and wind speed and in-situ data from the “Microbiomes cruise” on the SV Tara in August–September 2021 revealed a late summer freshwater pathway, which was not well documented in earlier studies. By combining these datasets, we improved the characterization of summer ARP pathways. In 2021, the ARP was a succession of freshwater patches cut off from the main plume by the NBC rings. A patch of about 200.000 km2 with salinity <33.5 pss was observed in September 2021, bringing 0.5 Sv of Amazon water northwestward in a period where the mean ocean currents lead to eastward transport. This patch was shallow, very stratified, and it created a surface steric-height anomaly that was identified as an anticyclonic feature in altimetric sea level products. Once separated from the NBC retroflection, it was mainly driven by Ekman currents. Other similar patches were observed during the 2021 summer, leading to a strong intermittency of the ARP transport. They strongly contributed to make 2021 the year with the largest northwestward freshwater transport in late summer within the 2010–2021 time-period investigated. This freshwater transport pathway is important for all plume-related phenomena, and show the ability of combined SMOS and SMAP data to accurately represent the day-to-day SSS variability.}, note = {Online available at: \url{https://doi.org/10.1016/j.rse.2024.114165} (DOI). Olivier, L.; Reverdin, G.; Boutin, J.; Iudicone, D.; Laxenaire, R.; Pesant, S.; Calil, P.; Horstmann, J.; Couet, D.; Erta, J.; Huber, P.; Sarmento, H.; Freire, A.; Koch-Larrouy, A.; Vergely, J.; Rousselot, P.; Speich, S.: Late summer northwestward Amazon plume pathway under the action of the North Brazil Current rings. Remote Sensing of Environment. 2024. vol. 307, 114165. DOI: 10.1016/j.rse.2024.114165}} @misc{souzaneto_the_rio_2024, author={Souza-Neto, P.W.M.,da Silveira, I.C.A.,Rocha, C.B.,Lazaneo, C.Z.,Calil, P.H.R.}, title={The Rio Grande Rise circulation: Dynamics of an internal tide conversion hotspot in the Southwestern Atlantic}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.pocean.2024.103264}, abstract = {The Rio Grande Rise (RGR) is a plateau located at 31°S in the Southwestern Atlantic, rising from 5916 m up to 161 m below the sea level. The RGR is an important site for future mining of Fe-Mn crusts and can lead to an expansion of Brazil’s Exclusive Economic Zone. The Cruzeiro do Sul Rift (CSR) fault cuts through the RGR from southeast to northwest. In this study we characterize the RGR circulation, showing that M2 tides are the main source of variability in the region, with an amplitude that can reach 0.3 m s−1, larger than the mean flow. These M2 tides are dominated by the baroclinic component and intensified near the bottom. The generation of M2 internal tides occurs mainly in the CSR slopes, with most energy converted from the barotropic tide being radiated away in the form of tidal beams. In addition, the impingement of the mean southern South Equatorial Current and tidal rectification generates anticyclonic circulations around the RGR peaks, with the latter mechanism being responsible for a bottom intensified anticyclonic circulation of 0.2 m s−1. Finally, our results reveal that the RGR is a hotspot of internal tide generation in the Southwestern Atlantic.}, note = {Online available at: \url{https://doi.org/10.1016/j.pocean.2024.103264} (DOI). Souza-Neto, P.; da Silveira, I.; Rocha, C.; Lazaneo, C.; Calil, P.: The Rio Grande Rise circulation: Dynamics of an internal tide conversion hotspot in the Southwestern Atlantic. Progress in Oceanography. 2024. vol. 224, 103264. DOI: 10.1016/j.pocean.2024.103264}} @misc{strauss_potential_nitrogen_2024, author={Strauss, J.,Marushchak, M.E.,van Delden, L.,Sanders, T.,Biasi, C.,Voigt, C.,Jongejans, L.L.,Treat, C.}, title={Potential nitrogen mobilisation from the Yedoma permafrost domain}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1088/1748-9326/ad3167}, abstract = {Permafrost regions, characterised by extensive belowground excess ice, are highly vulnerable to rapid thaw, particularly in areas such as the Yedoma domain. This region is known to freeze-lock a globally significant stock of soil nitrogen (N). However, the fate of this N upon permafrost thaw remains largely unknown. In this study, we assess the impact of climate warming on the size and dynamics of the soil N pool in (sub-)Arctic ecosystems, drawing upon recently published data and literature. Our findings suggest that climate warming and increased thaw depths will result in an expansion of the reactive soil N pool due to the larger volume of (seasonally) thawed soil. Dissolved organic N emerges as the predominant N form for rapid cycling within (sub-)Arctic ecosystems. The fate of newly thawed N from permafrost is primarily influenced by plant uptake, microbial immobilisation, changes in decomposition rates due to improved N availability, as well as lateral flow. The Yedoma domain contains substantial N pools, and the partial but increasing thaw of this previously frozen N has the potential to amplify climate feedbacks through additional nitrous oxide (N2O) emissions. Our ballpark estimate indicates that the Yedoma domain may contribute approximately 6% of the global annual rate of N2O emissions from soils under natural vegetation. However, the released soil N could also mitigate climate feedbacks by promoting enhanced vegetation carbon uptake. The likelihood and rate of N2O production are highest in permafrost thaw sites with intermediate moisture content and disturbed vegetation, but accurately predicting future landscape and hydrology changes in the Yedoma domain remains challenging. Nevertheless, it is evident that the permafrost-climate feedback will be significantly influenced by the quantity and mobilisation state of this unconsidered N pool.}, note = {Online available at: \url{https://doi.org/10.1088/1748-9326/ad3167} (DOI). Strauss, J.; Marushchak, M.; van Delden, L.; Sanders, T.; Biasi, C.; Voigt, C.; Jongejans, L.; Treat, C.: Potential nitrogen mobilisation from the Yedoma permafrost domain. Environmental Research Letters. 2024. vol. 19, 043002. DOI: 10.1088/1748-9326/ad3167}} @misc{siems_dissolved_trace_2024, author={Siems, A.,Zimmermann, T.,Sanders, T.,Pröfrock, D.}, title={Dissolved trace elements and nutrients in the North Sea – a current baseline}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1007/s10661-024-12675-2}, abstract = {Primary production is an important driver of marine carbon storage. Besides the major nutrient elements nitrogen, phosphorus, and silicon, primary production also depends on the availability of nutrient-type metals (e.g., Cu, Fe, Mo) and the absence of toxicologically relevant metals (e.g., Ni, Pb). Especially in coastal oceans, carbon storage and export to the open ocean is highly variable and influenced by anthropogenic eutrophication and pollution. To model future changes in coastal carbon storage processes, a solid baseline of nutrient and metal concentrations is crucial. The North Sea is an important shelf sea, influenced by riverine, atmospheric, Baltic Sea, and North Atlantic inputs. We measured the concentrations of dissolved nutrients (NH4+, NO3−, PO43−, and SiO44−) and 26 metals in 337 water samples from various depths within the entire North Sea and Skagerrak. A principal component analysis enabled us to categorize the analytes into three groups according to their predominant behavior: tracers for seawater (e.g., Mo, U, V), recycling (e.g., NO3−, PO43−, SiO44−), and riverine or anthropogenic input (e.g., Ni, Cu, Gd). The results further indicate an increasing P-limitation and increasing anthropogenic gadolinium input into the German Bight.}, note = {Online available at: \url{https://doi.org/10.1007/s10661-024-12675-2} (DOI). Siems, A.; Zimmermann, T.; Sanders, T.; Pröfrock, D.: Dissolved trace elements and nutrients in the North Sea – a current baseline. Environmental Monitoring and Assessment. 2024. vol. 196, 539. DOI: 10.1007/s10661-024-12675-2}} @misc{kordubel_improving_the_2024, author={Kordubel, K.,Baschek, B.,Hieronymi, M.,Voynova, Y.G.,Möller, K.O.}, title={Improving the sampling of red Noctiluca scintillans to understand its impact on coastal ecosystem dynamics}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1093/plankt/fbae010}, abstract = {Recently, natural and anthropogenic pressures caused an apparent increase in the frequency and spread of red Noctiluca scintillans (RNS) blooms. Here, we describe this potential expansion and the associated environmental factors based on an extensive literature review (1857–2023). Our analysis suggests that Noctiluca increased over time in several Australian, Chinese and European coastal regions. We point to eutrophication, ocean warming and deoxygenation as possible drivers of these intensifications. Moreover, we demonstrate Noctiluca’s importance for coastal ecosystems: with competitive advantages causing fast and intense blooms, Noctiluca has the potential to alter plankton communities, influencing productivity in affected areas. Throughout our analysis, we identified major knowledge gaps that are relevant to assess Noctiluca: (i) challenges in determining its spatiotemporal evolution; (ii) limited knowledge about drivers triggering and ending blooms; (iii) scarce information about feeding, reproduction and interaction in situ and (iv) uncertainty regarding its contribution to carbon export. We hypothesize that these gaps are related to limitations in traditional sampling techniques, and we highlight the need for a holistic approach combining traditional with novel techniques like remote sensing and underwater cameras. Our suggested approach could help filling the identified gaps and facilitate predictions of bloom dynamics and impacts under future climate conditions.}, note = {Online available at: \url{https://doi.org/10.1093/plankt/fbae010} (DOI). Kordubel, K.; Baschek, B.; Hieronymi, M.; Voynova, Y.; Möller, K.: Improving the sampling of red Noctiluca scintillans to understand its impact on coastal ecosystem dynamics. Journal of Plankton Research. 2024. vol. 46, no. 3, 251-271. DOI: 10.1093/plankt/fbae010}} @misc{tobiashnefeldt_seasonality_rather_2024, author={Tobias-Hünefeldt, S.P.,van Beusekom, J.E.E.,Russnak, V.,Dähnke, K.,Streit, W.R.,Grossart, H.P.}, title={Seasonality, rather than estuarine gradient or particle suspension/sinking dynamics, determines estuarine carbon distributions}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.scitotenv.2024.171962}, abstract = {Estuaries are important components of the global carbon cycle; exchanging carbon between aquatic, atmospheric, and terrestrial environments, representing important loci for blue carbon storage and greenhouse gas emissions. However, how estuarine gradients affect sinking/suspended particles, and dissolved organic matter dynamic interactions remains unexplored. We fractionated suspended/sinking particles to assess and characterise carbon fate differences. We investigated bacterial colonisation (SYBR Green I) and exopolymer concentrations (TEP/CSP) with microscopy staining techniques. C/H/N and dry weight analysis identified particle composition differences. Meanwhile, nutrient and carbon analysis, and excitation and emission matrix evaluations with a subsequent parallel factor (PARAFAC) analysis characterised dissolved organic matter.,The lack of clear salinity driven patterns in our study are presumably due to strong mixing forces and high particle heterogeneity along the estuary, with only density differences between suspended and sinking particles. Elbe estuary particles' organic portion is made up of marine-like (sinking) and terrestrial-like (suspended) signatures. Salinity did not have a significant role in microbial degradation and carbon composition, although brackish estuary portions were more biologically active. Indicative of increased degradation rates, leading to decreased greenhouse gas emissions, which are especially relevant for estuaries, with their disproportionate greenhouse gas emissions. Bacterial colonisation decreased seawards, indicative of decreased degradation, and shifts in microbial community composition and functions. Our findings span diverse strands of research, concerning steady carbon contributions from both marine and terrestrial sources, carbon aromaticity, humification index, and bioavailability. Their integration highlights the importance of the Elbe estuary as a model system, providing robust information for future policy decisions affecting dissolved and particulate matter dynamics within the Elbe Estuary.}, note = {Online available at: \url{https://doi.org/10.1016/j.scitotenv.2024.171962} (DOI). Tobias-Hünefeldt, S.; van Beusekom, J.; Russnak, V.; Dähnke, K.; Streit, W.; Grossart, H.: Seasonality, rather than estuarine gradient or particle suspension/sinking dynamics, determines estuarine carbon distributions. Science of the Total Environment. 2024. vol. 926, 171962. DOI: 10.1016/j.scitotenv.2024.171962}} @misc{hochfeld_evolutionary_adaptation_2024, author={Hochfeld, I.,Hinners, J.}, title={Evolutionary adaptation to steady or changing environments affects competitive outcomes in marine phytoplankton}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1002/lno.12559}, abstract = {The interplay of phytoplankton competition and adaptation affects how phytoplankton, and ultimately marine ecosystems, respond to global warming. However, current ecosystem models that are run under global warming scenarios do not include both processes simultaneously. To fill this gap, we developed an innovative ecosystem model for the Baltic Sea that simulates competition between three phytoplankton functional groups and allows for adaptation to changing temperatures. As adaptation can be affected by the resuspension of dormant resting cells from the sediment, we explicitly implemented this mechanism. We found that resuspension tends to slow down adaptation, and that competition and adaptation influence each other. The outcome of the competition-adaptation interplay depends on environmental conditions. In a steady environment, competition drives adaptation to individual temperature niches to reduce competition pressure. In a changing environment, adaptation allows inferior competitors to mitigate the dominance of preadapted superior competitors. Our results demonstrate that by neglecting adaptation, models can systematically overestimate warming-related changes in taxa dominance. Ecosystem models should include both competition and adaptation to accurately simulate phytoplankton responses to global warming. Our model is ideally suited to integrate emerging evolutionary data based on long-term data series (e.g., from sediment archives) to further improve projections of future ecosystem change.}, note = {Online available at: \url{https://doi.org/10.1002/lno.12559} (DOI). Hochfeld, I.; Hinners, J.: Evolutionary adaptation to steady or changing environments affects competitive outcomes in marine phytoplankton. Limnology and Oceanography. 2024. vol. 69, no. 5, 1172-1186. DOI: 10.1002/lno.12559}} @misc{hinners_multitrait_diversification_2024, author={Hinners, J.,Argyle, P.A.,Walworth, N.G.,Doblin, M.A.,Levine, N.M.,Collins, S.}, title={Multi-trait diversification in marine diatoms in constant and warmed environments}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1098/rspb.2023.2564}, abstract = {Phytoplankton are photosynthetic marine microbes that affect food webs, nutrient cycles and climate regulation. Their roles are determined by correlated phytoplankton functional traits including cell size, chlorophyll content and cellular composition. Here, we explore patterns of evolution in interrelated trait values and correlations. Because both chance events and natural selection contribute to phytoplankton trait evolution, we used population bottlenecks to diversify six genotypes of Thalassiosirid diatoms. We then evolved them as large populations in two environments. Interspecific variation and within-species evolution were visualized for nine traits and their correlations using reduced axes (a trait-scape). Our main findings are that shifts in trait values resulted in movement of evolving populations within the trait-scape in both environments, but were more frequent when large populations evolved in a novel environment. Which trait relationships evolved was population-specific, but greater departures from ancestral trait correlations were associated with lower population growth rates. There was no single master trait that could be used to understand multi-trait evolution. Instead, repeatable multi-trait evolution occurred along a major axis of variation defined by several diatom traits and trait relationships. Because trait-scapes capture changes in trait relationships and values together, they offer an insightful way to study multi-trait variation.}, note = {Online available at: \url{https://doi.org/10.1098/rspb.2023.2564} (DOI). Hinners, J.; Argyle, P.; Walworth, N.; Doblin, M.; Levine, N.; Collins, S.: Multi-trait diversification in marine diatoms in constant and warmed environments. Proceedings of the Royal Society B. 2024. vol. 291, no. 2019, 20232564. DOI: 10.1098/rspb.2023.2564}} @misc{jiao_the_microbial_2024, author={Jiao, N.,Luo, T.,Chen, Q.,Zhao, Z.,Xiao, X.,Liu, J.,Jian, Z.,Xie, S.,Thomas, H.,Herndl, G.J.,Benner, R.,Gonsior, M.,Chen, F.,Cai, W.J.,Robinson, C.}, title={The microbial carbon pump and climate change}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1038/s41579-024-01018-0}, abstract = {The ocean has been a regulator of climate change throughout the history of Earth. One key mechanism is the mediation of the carbon reservoir by refractory dissolved organic carbon (RDOC), which can either be stored in the water column for centuries or released back into the atmosphere as CO2 depending on the conditions. The RDOC is produced through a myriad of microbial metabolic and ecological processes known as the microbial carbon pump (MCP). Here, we review recent research advances in processes related to the MCP, including the distribution patterns and molecular composition of RDOC, links between the complexity of RDOC compounds and microbial diversity, MCP-driven carbon cycles across time and space, and responses of the MCP to a changing climate. We identify knowledge gaps and future research directions in the role of the MCP, particularly as a key component in integrated approaches combining the mechanisms of the biological and abiotic carbon pumps for ocean negative carbon emissions.}, note = {Online available at: \url{https://doi.org/10.1038/s41579-024-01018-0} (DOI). Jiao, N.; Luo, T.; Chen, Q.; Zhao, Z.; Xiao, X.; Liu, J.; Jian, Z.; Xie, S.; Thomas, H.; Herndl, G.; Benner, R.; Gonsior, M.; Chen, F.; Cai, W.; Robinson, C.: The microbial carbon pump and climate change. Nature Reviews Microbiology. 2024. vol. 22, 408–419. DOI: 10.1038/s41579-024-01018-0}} @misc{rhl_storm_events_2024, author={Rühl, S.,Möller, K.O.}, title={Storm events alter marine snow fluxes in stratified marine environments}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.ecss.2024.108767}, abstract = {Marine snow is an important part of the biological pump and marine food web, and although previous research has provided a thorough understanding of the underlying mechanisms of marine snow dynamics in general, there is still a knowledge gap concerning extreme conditions, such as storm events. Storms are predicted to increase in magnitude and frequency in the future, and could potentially have a large impact on marine snow dynamics. For these reasons, we assessed the effects of storm events on marine snow dynamics in the Baltic Sea, an area chosen due to its well-studied and stable stratified conditions outside of meteorologically extreme events. The combination of in-situ imaging and biogeochemical environmental data from three different years facilitates an assessment of storm event impacts, while simultaneously excluding the possibility that patterns in particle distribution and abundances were due to other environmental influences. The results show that extreme meteorological events such as storms can increase the abundance of marine snow in stratified marine environments by a factor of 10 or more. The particles are distributed more widely and are larger, brighter, rounder and less complexly shaped. In non-extreme conditions, particles have been observed to deposit along the density gradients in thin-layer aggregations. This study indicates that storms can episodically disrupt these formations, thereby altering vertical flux and export potentials across stratification boundaries. In addition, we observed that marine snow abundances are drastically higher in the aftermath of storm events than under calm conditions, potentially due to the disaggregation of larger particles and lateral import of resuspended matter from shallower areas. In light of the increased frequency and magnitude of storms in the future due to climate change, our findings indicate that marine snow dynamics in stratified environments might be altered permanently.}, note = {Online available at: \url{https://doi.org/10.1016/j.ecss.2024.108767} (DOI). Rühl, S.; Möller, K.: Storm events alter marine snow fluxes in stratified marine environments. Estuarine, Coastal and Shelf Science. 2024. vol. 302, 108767. DOI: 10.1016/j.ecss.2024.108767}} @misc{bi_holistic_optical_2024, author={Bi, S.,Hieronymi, M.}, title={Holistic optical water type classification for ocean, coastal, and inland waters}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1002/lno.12606}, abstract = {Water constituents exhibit diverse optical properties across ocean, coastal, and inland waters, which alter their remote-sensing reflectance obtained via satellites. Optical water type (OWT) classifications utilized in satellite data processing aim to mitigate optical complexity by identifying fitting ocean color algorithms tailored to each water type. This facilitates comprehension of biogeochemical cycles ranging from local to global scales. Previous OWT frameworks have focused narrowly on either oceanic or inland waters and have relied too heavily on specific data collections. We propose a novel holistic OWT framework applicable to all natural waters, based on state-of-the-art bio-geo-optical modeling and radiative transfer simulations that encompass different phytoplankton groups. This framework employs a “knowledge-driven” paradigm, combining domain knowledge and insights from previous studies to simulate the reflectance spectrum from water constituent concentrations and inherent optical properties. Our method extracts optical variables to represent the full spectrum of reflectance, consolidating both spectral shape and magnitude. We apply the framework utilizing diverse in situ, synthetic, and satellite data (Sentinel-3 OLCI) and demonstrate its better classifiability than other frameworks. This framework lays the foundation for comprehensive global monitoring of natural waters.}, note = {Online available at: \url{https://doi.org/10.1002/lno.12606} (DOI). Bi, S.; Hieronymi, M.: Holistic optical water type classification for ocean, coastal, and inland waters. Limnology and Oceanography. 2024. vol. 69, no. 7, 1547-1561. DOI: 10.1002/lno.12606}} @misc{ingeniero_dissolved_nitric_2024, author={Ingeniero, R.C.O.,Schulz, G.,Bange, H.W.}, title={Dissolved nitric oxide in the lower Elbe Estuary and the Port of Hamburg area}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-21-3425-2024}, abstract = {Nitric oxide (NO) is an intermediate of various microbial nitrogen cycle processes, and the open-ocean and coastal areas are generally a source of NO to the atmosphere. However, our knowledge about its distribution and the main production processes in coastal areas and estuaries is rudimentary at best. To this end, dissolved NO concentrations were measured for the first time in surface waters along the lower Elbe Estuary and Port of Hamburg area in July 2021. The discrete surface water samples were analyzed using a chemiluminescence NO analyzer connected to a stripping unit. The NO concentrations ranged from below the limit of detection (9.1 pM) to 17.7 pM, averaging 12.5 pM, and were supersaturated in the surface layer of both the lower Elbe Estuary and the Port of Hamburg area, indicating that the study site was a source of NO to the atmosphere during the study period. On the basis of a comprehensive comparison of NO concentrations with parallel nutrient, oxygen, and nitrous oxide concentration measurements, we conclude that the observed distribution of dissolved NO most likely resulted from nitrification. In the Port of Hamburg, however, nitrifier denitrification and/or denitrification might also affect the NO distribution.}, note = {Online available at: \url{https://doi.org/10.5194/bg-21-3425-2024} (DOI). Ingeniero, R.; Schulz, G.; Bange, H.: Dissolved nitric oxide in the lower Elbe Estuary and the Port of Hamburg area. Biogeosciences. 2024. vol. 21, no. 14, 3425–3440. DOI: 10.5194/bg-21-3425-2024}} @misc{martin_when_to_2024, author={Martin, A.P.,Dominguez, A.B.,Baker, C.A.,Baumas, C.M.J.,Bisson, K.M.,Cavan, E.,Freilich, M.,Galbraith, E.,Galí, M.,Henson, S.,Kvale, K.F.,Lemmen, C.,Luo, J.Y.,McMonagle, H.,Viríssimo, F.d.M.,Möller, K.O.,Richon, C.,Suresh, I.,Wilson, J.D.,Woodstock, M.S.,Yool, A.}, title={When to add a new process to a model – and when not: a marine biogeochemical perspective}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.ecolmodel.2024.110870}, abstract = {Models are critical tools for environmental science. They allow us to examine the limits of what we think we know and to project that knowledge into situations for which we have little or no data. They are by definition simplifications of reality. There are therefore inevitably times when it is necessary to consider adding a new process to a model that was previously omitted. Doing so may have consequences. It can increase model complexity, affect the time a model takes to run, impact the match between the model output and observations, and complicate comparison to previous studies using the model. How a decision is made on whether to add a process is no more objective than how a scientist might design a laboratory experiment. To illustrate this, we report on an event where a broad and diverse group of marine biogeochemists were invited to construct flowcharts to support making the decision of when to include a new process in a model. The flowcharts are used to illustrate both the complexity of factors that modellers must consider prior to making a decision on model development and the diversity of perspectives on how that decision should be reached. The purpose of this paper is not to provide a definitive protocol for making that decision. Instead, we argue that it is important to acknowledge that there is no objectively “best” approach and instead we discuss the flowcharts created as a means of encouraging modellers to think through why and how they are doing something. This may also hopefully guide observational scientists to understand why it may not always be appropriate to include a process they are studying in a model.}, note = {Online available at: \url{https://doi.org/10.1016/j.ecolmodel.2024.110870} (DOI). Martin, A.; Dominguez, A.; Baker, C.; Baumas, C.; Bisson, K.; Cavan, E.; Freilich, M.; Galbraith, E.; Galí, M.; Henson, S.; Kvale, K.; Lemmen, C.; Luo, J.; McMonagle, H.; Viríssimo, F.; Möller, K.; Richon, C.; Suresh, I.; Wilson, J.; Woodstock, M.; Yool, A.: When to add a new process to a model – and when not: a marine biogeochemical perspective. Ecological Modelling. 2024. vol. 498, 110870. DOI: 10.1016/j.ecolmodel.2024.110870}} @misc{johnson_can_coastal_2024, author={Johnson, M.,van Doorn, E.,Hilmi, N.,Marandino, C.,McDonald, N.,Thomas, H.,Allemand, D.,Algarin, L.D.,Lebleu, L.,Ho, D.T.,Oloyede, M.,Safa, A.,Swarzenski, P.}, title={Can coastal and marine carbon dioxide removal help to close the emissions gap? Scientific, legal, economic, and governance considerations}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1525/elementa.2023.00071}, abstract = {In this Policy Bridge, we present the key issues regarding the safety, efficacy, funding, and governance of coastal and marine systems in support of climate change mitigation. Novel insights into the likely potential of these systems for use in mitigating excess carbon dioxide emissions are presented. There may be potential for coastal blue carbon and marine carbon dioxide removal (mCDR) actions to impact climate change mitigation significantly over the rest of the 21st century, particularly post 2050. However, governance frameworks are needed urgently to ensure that the potential contribution from coastal and ocean systems to climate change mitigation can be evaluated properly and implemented safely. Ongoing research and monitoring efforts are essential to ensure that unforeseen side effects are identified and corrective action is taken. The co-creation of governance frameworks between academia, the private sector, and policymakers will be fundamental to the safe implementation of mCDR in the future. Furthermore, a radical acceleration in the pace of development of mCDR governance is needed immediately if it is to contribute significantly to the removal of excess carbon dioxide emissions by the latter half of this century. To what extent large-scale climate interventions should be pursued is a decision for policymakers and wider society, but adaptive legal, economic, policy, research, and monitoring frameworks are needed urgently to facilitate informed decision-making around any implementation of mCDR in the coming decades. Coastal and ocean systems cannot be relied upon to deliver significant carbon dioxide removal until further knowledge of specific management options is acquired and evaluated.}, note = {Online available at: \url{https://doi.org/10.1525/elementa.2023.00071} (DOI). Johnson, M.; van Doorn, E.; Hilmi, N.; Marandino, C.; McDonald, N.; Thomas, H.; Allemand, D.; Algarin, L.; Lebleu, L.; Ho, D.; Oloyede, M.; Safa, A.; Swarzenski, P.: Can coastal and marine carbon dioxide removal help to close the emissions gap? Scientific, legal, economic, and governance considerations. Elementa: Science of the Anthropocene. 2024. vol. 12, no. 1, 00071. DOI: 10.1525/elementa.2023.00071}} @misc{rttgers_measurement_of_2024, author={Röttgers, R.,Novak, M.G.,Belz, M.}, title={Measurement of light absorption by chromophoric dissolved organic matter using a type-II liquid capillary waveguide: assessment of an achievable accuracy}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1364/AO.516580}, abstract = {Light absorption by chromophoric dissolved organic matter (CDOM) in the ocean is often measured using liquid waveguide capillary cells coupled to spectral array detectors. This type of optical setup is affected by several sources of uncertainties related to the waveguide and the detector. Uncertainties from the waveguide arise from errors in the effective path length and the effects of water salinity, while errors related to the detector are due to the non-linearity in the response, internal stray light, and wavelength accuracy. Here, uncertainties in the measurements of the spectral absorption coefficient of CDOM due to the optical setup itself were investigated in detail. The related systematic errors were very often significant (2–15%) and larger than expected from simple measurement uncertainty (±1%). However, they can be corrected by characterizing the detector’s response for non-linearity and stray light, regularly performing calibrations for the detector’s wavelength response, and routinely measuring the waveguide’s effective path length. Including such corrections and timely calibrations reduces the uncertainties related to the spectrophotometric measurements to about ±2%. Uncertainties related to the necessary handling of samples are not included here.}, note = {Online available at: \url{https://doi.org/10.1364/AO.516580} (DOI). Röttgers, R.; Novak, M.; Belz, M.: Measurement of light absorption by chromophoric dissolved organic matter using a type-II liquid capillary waveguide: assessment of an achievable accuracy. Applied Optics. 2024. vol. 63, no. 14, 3811-3824. DOI: 10.1364/AO.516580}} @misc{bussmann_influence_of_2024, author={Bussmann, I.,Achterberg, E.P.,Brix, H.,Brüggemann, N.,Flöser, G.,Schütze, C.,Fischer, P.}, title={Influence of wind strength and direction on diffusive methane fluxes and atmospheric methane concentrations above the North Sea}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-21-3819-2024}, abstract = {Quantification of the diffusive methane fluxes between the coastal ocean and atmosphere is important to constrain the atmospheric methane budget. The determination of the fluxes in coastal waters is characterized by a high level of uncertainty. To improve the accuracy of the estimation of coastal methane fluxes, high temporal and spatial sampling frequencies of dissolved methane in seawater are required, as well as the quantification of atmospheric methane concentrations, wind speed and wind direction above the ocean. In most cases, these atmospheric data are obtained from land-based atmospheric and meteorological monitoring stations in the vicinity of the coastal ocean methane observations. In this study, we measured wind speed, wind direction and atmospheric methane directly on board three research vessels in the southern North Sea and compared the local and remote atmospheric and meteorological measurements on the quality of the flux data. In addition, we assessed the source of the atmospheric methane measured in the study area in the German Bight using air mass back-trajectory assessments. The choice of the wind speed data source had a strong impact on the flux calculations. Fluxes based on wind data from nearby weather stations amounted to only 58 ± 34 % of values based on in situ data. Using in situ data, we calculated an average diffusive methane sea-to-air flux of 221 ± 351 µmol m−2 d−1 (n = 941) and 159 ± 444 µmol m−2 d−1 (n = 3028) for our study area in September 2019 and 2020, respectively. The area-weighted diffusive flux for the entire area of Helgoland Bay (3.78 × 109 m2) was 836 ± 97 and 600 ± 111 kmol d−1 for September 2019 and 2020, respectively. Using the median value of the diffusive fluxes for these extrapolations resulted in much lower values compared to area-weighted extrapolations or mean-based extrapolations. In general, at high wind speeds, the surface water turbulence is enhanced, and the diffusive flux increases. However, this enhanced methane input is quickly diluted within the air mass. Hence, a significant correlation between the methane flux and the atmospheric concentration was observed only at wind speeds < 5 m s−1. The atmospheric methane concentration was mainly influenced by the wind direction, i.e., the origin of the transported air mass. Air masses coming from industrial regions resulted in elevated atmospheric methane concentrations, while air masses coming from the North Sea transported reduced methane levels. With our detailed study on the spatial distribution of methane fluxes we were able to provide a detailed and more realistic estimation of coastal methane fluxes.}, note = {Online available at: \url{https://doi.org/10.5194/bg-21-3819-2024} (DOI). Bussmann, I.; Achterberg, E.; Brix, H.; Brüggemann, N.; Flöser, G.; Schütze, C.; Fischer, P.: Influence of wind strength and direction on diffusive methane fluxes and atmospheric methane concentrations above the North Sea. Biogeosciences. 2024. vol. 21, no. 16, 3819–3838. DOI: 10.5194/bg-21-3819-2024}} @misc{buschbaum_climate_change_2024, author={Buschbaum, C.,Shama, L.N.S.,Amorim, F.L.L.,Brand, S.,Broquard, C.M.A.,Camillini, N.,Cornelius, A.,Dolch, T.,Dummermuth, A.,Feldner, J.,Guignard, M.S.,Habedank, J.,Hoffmann, J.J.L.,Horn, S.,Konyssova, G.,Koop-Jakobsen, K.,Lauerburg, R.,Mehler, K.,Odongo, V.,Petri, M.,Reents, S.,Rick, J.J.,Rubinetti, S.,Salahi, M.,Sander, L.,Sidorenko, V.,Spence-Jones, H.C.,van Beusekom, J.E.E.,Waser, A.M.,Wegner, K.M.,Wiltshire, K.H.}, title={Climate change impacts on a sedimentary coast—a regional synthesis from genes to ecosystems}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1007/s12526-024-01453-5}, abstract = {Climate change effects on coastal ecosystems vary on large spatial scales, but can also be highly site dependent at the regional level. The Wadden Sea in the south-eastern North Sea is warming faster than many other temperate coastal areas, with surface seawater temperature increasing by almost 2 °C over the last 60 years, nearly double the global ocean mean increase. Climate warming is accompanied by rising sea levels, which have increased by approximately 2 mm yr−1 over the last 120 years. For this sedimentary coast, the predicted acceleration of sea-level rise will have profound effects on tidal dynamics and bathymetry in the area. This paper synthesises studies of the effects of ocean warming and sea level rise in the northern Wadden Sea, largely based on research conducted at the Wadden Sea Station Sylt of the Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research. An increasing rate of sea level rise above a critical threshold will lead to coastal erosion and changes in sediment composition, and may cause the transition from a tidal to lagoon-like environment as tidal flats submerge. This involves changes to coastal morphology, and the decline of important habitats such as muddy tidal flats, salt marshes and seagrass meadows, as well as their ecological services (e.g. carbon sequestration). Ocean warming affects plankton dynamics and phenology, as well as benthic community structure by hampering cold-adapted but facilitating warm-adapted species. The latter consist mostly of introduced non-native species originating from warmer coasts, with some epibenthic species acting as ecosystem engineers that create novel habitats on the tidal flats. Warming also changes interactions between species by decoupling existing predator–prey dynamics, as well as forming new interactions in which mass mortalities caused by parasites and pathogens can play an understudied but essential role. However, Wadden Sea organisms can adapt to changing abiotic and biotic parameters via genetic adaptation and phenotypic plasticity, which can also be inherited across generations (transgenerational plasticity), enabling faster plastic responses to future conditions. Important research advances have been made using next-generation molecular tools (-omics), mesocosm experiments simulating future climate scenarios, modelling approaches (ecological network analysis), and internet-based technologies for data collection and archiving. By synthesising these climate change impacts on multiple levels of physical and biological organisation in the northern Wadden Sea, we reveal knowledge gaps that need to be addressed by future investigations and comparative studies in other regions in order to implement management, mitigation and restoration strategies to preserve the uniqueness of this ecosystem of global importance.}, note = {Online available at: \url{https://doi.org/10.1007/s12526-024-01453-5} (DOI). Buschbaum, C.; Shama, L.; Amorim, F.; Brand, S.; Broquard, C.; Camillini, N.; Cornelius, A.; Dolch, T.; Dummermuth, A.; Feldner, J.; Guignard, M.; Habedank, J.; Hoffmann, J.; Horn, S.; Konyssova, G.; Koop-Jakobsen, K.; Lauerburg, R.; Mehler, K.; Odongo, V.; Petri, M.; Reents, S.; Rick, J.; Rubinetti, S.; Salahi, M.; Sander, L.; Sidorenko, V.; Spence-Jones, H.; van Beusekom, J.; Waser, A.; Wegner, K.; Wiltshire, K.: Climate change impacts on a sedimentary coast—a regional synthesis from genes to ecosystems. Marine Biodiversity. 2024. vol. 54, 64. DOI: 10.1007/s12526-024-01453-5}} @misc{kordubel_longterm_changes_2024, author={Kordubel, K.,Martínez-Rincón, R.,Baschek, B.,Boersma, M.,Hieronymi, M.,Johns, D.G.,Kirstein, I.V.,Voynova, Y.G.,Möller, K.O.}, title={Long-term changes in spatiotemporal distribution of Noctiluca scintillans in the southern North Sea}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.hal.2024.102699}, abstract = {To assess the spatiotemporal evolution of the heterotrophic dinoflagellate Noctiluca scintillans in the North Sea, the Helgoland Roads time series and Continuous Plankton Recorder survey were analysed using generalized additive models. Over the last decades, blooms of N. scintillans have occurred more frequently and intensively in many regions. This harmful algal bloom forming species can alter food webs, reduce ecosystem productivity, and lead to economic losses while causing lower aquacultural yields. After the 1990s, N. scintillans abundances have significantly increased by 1.65-fold and a significant prolongation of the bloom window was found (from 27.5 to 98 days in recent decades) off the island of Helgoland, Germany. Significant correlations were found between bloom initiation and nutrients, as well as light availability since these factors lead to increased prey availability. Highest abundances of N. scintillans were associated with water temperatures around 17 °C and wind speed below 6 ms−1 causing dense surface accumulations. Solar radiation of more than 200 Wm−2 was identified as a main driver for post-bloom conditions as it can deteriorate the cells and lead to the decline of N. scintillans abundances. In the southern North Sea, N. scintillans occurrences have intensified and spread since the 1980s with hotspots identified as the coastal waters adjacent to the estuaries of the Elbe and Rhine rivers.}, note = {Online available at: \url{https://doi.org/10.1016/j.hal.2024.102699} (DOI). Kordubel, K.; Martínez-Rincón, R.; Baschek, B.; Boersma, M.; Hieronymi, M.; Johns, D.; Kirstein, I.; Voynova, Y.; Möller, K.: Long-term changes in spatiotemporal distribution of Noctiluca scintillans in the southern North Sea. Harmful Algae. 2024. vol. 138, 102699. DOI: 10.1016/j.hal.2024.102699}} @misc{anspertoomsalu_suitability_of_2024, author={Ansper-Toomsalu, A.,Uusõue, M.,Kangro, K.,Hieronymi, M.,Alikas, K.}, title={Suitability of different in-water algorithms for eutrophic and absorbing waters applied on Sentinel-2 MSI and Sentinel-3 OLCI data}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.3389/frsen.2024.1423332}, abstract = {Optically complex waters present significant challenges for remote sensing due to high concentrations of optically active substances (OASs) and their inherent optical properties (IOPs), as well as the adjacency effect. OASs and IOPs can be derived from atmospheric correction processors’ in-water algorithms applied to data from Sentinel-2 MultiSpectral Instrument (S2 MSI) and Sentinel-3 Ocean and Land Color Instrument (S3 OLCI). This study compared S3 OLCI Level-2 in-water products for Case-2 waters with alternative in-water algorithms derived from ACOLITE, POLYMER, C2RCC, and A4O. Fifty in-water algorithms were evaluated using an extensive match-up dataset from lakes and coastal areas, focusing particularly on small lakes with high colored dissolved organic matter absorption at 442 nm (up to 48 m-1). The Chl a band ratio introduced by Gons et al. (2022) applied to data processed by ACOLITE performed best for S3 OLCI Chl a retrieval (dispersion = 23%, bias = 10%). Gons et al. (2022) band ratio also showed consistent agreement between S3 OLCI and S2 MSI resampled data (intercept of 6.27 and slope of 0.83, close to the 1:1 line); however, lower Chl a values (<20 mg/m3) were overestimated by S2 MSI. When estimating errors associated with proximity to land, S2 MSI Chl a in-water algorithms had higher errors close to the shore (on average 315%) compared to S3 OLCI (on average 150%). Chl a retrieved with POLYMER had the lowest errors close to the shore for both S2 MSI and S3 OLCI data (on average 70%). Total suspended matter (TSM) retrieval with C2RCC performed well for S2 MSI (dispersion 24% and bias −12%). Total absorption was most accurately derived from C2RCC applied to S3 OLCI L1 data (dispersion < 43% and bias < −39%), and it was better estimated than its individual components: phytoplankton, mineral particles, and colored dissolved organic matter absorption. However, none of the colored dissolved organic matter absorption in-water algorithms performed well (dispersion > 59% and bias < −29%).}, note = {Online available at: \url{https://doi.org/10.3389/frsen.2024.1423332} (DOI). Ansper-Toomsalu, A.; Uusõue, M.; Kangro, K.; Hieronymi, M.; Alikas, K.: Suitability of different in-water algorithms for eutrophic and absorbing waters applied on Sentinel-2 MSI and Sentinel-3 OLCI data. Frontiers in Remote Sensing. 2024. vol. 5, 1423332. DOI: 10.3389/frsen.2024.1423332}} @misc{ogashawara_unleashing_the_2024, author={Ogashawara, I.,Wollrab, S.,Berger, S.A.,Kiel, C.,Jechow, A.,Guislain, A.L.N.,Gege, P.,Ruhtz, T.,Hieronymi, M.,Schneider, T.,Lischeid, G.,Singer, G.A.,Hölker, F.,Grossart, H.P,Nejstgaard, J.C.}, title={Unleashing the Power of Remote Sensing Data in Aquatic Research: Guidelines for Optimal Utilization}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1002/lol2.10427}, abstract = {The growing utilization of remote sensing data in lake studies provides crucial spatial insights into biogeochemistry and biology. However, clarity regarding the development and intended use of remote sensing products is often lacking. This letter aims to elucidate the tradeoffs for the utilization of remote sensing data in limnological studies with an example of based on the estimation of chlorophyll a due to its importance as a water quality indicator. The analysis initiates with a meticulous product selection, requiring an evaluation of its capacity to address the optical complexity of freshwater systems. Assessing atmospheric correction and product limitations ensures alignment with the study's objectives. Subsequently, rigorous validation of remote sensing products is essential, accompanied by a cautious interpretation of the data. This letter advocates for the use of remote sensing data, offering key strategies for their optimal utilization in lake studies.}, note = {Online available at: \url{https://doi.org/10.1002/lol2.10427} (DOI). Ogashawara, I.; Wollrab, S.; Berger, S.; Kiel, C.; Jechow, A.; Guislain, A.; Gege, P.; Ruhtz, T.; Hieronymi, M.; Schneider, T.; Lischeid, G.; Singer, G.; Hölker, F.; Grossart, H.; Nejstgaard, J.: Unleashing the Power of Remote Sensing Data in Aquatic Research: Guidelines for Optimal Utilization. Limnology and Oceanography Letters. 2024. DOI: 10.1002/lol2.10427}} @misc{kamjunke_complete_exhaustion_2024, author={Kamjunke, N.,Sanders, T.}, title={Complete exhaustion of dissolved nutrients in a large lowland river}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1007/s10661-024-12834-5}, abstract = {Riverine phytoplankton takes up phosphate, dissolved silicate, and nitrate. We investigated which nutrients are depleted during a Lagrangian sampling in the free-flowing part of the River Elbe in 2023. As part of this study, we tested the hypotheses that nutrient depletion might be caused by (1) above-average phytoplankton biomass or by (2) decreased nutrient load of the river during previous years. Phytoplankton biomass increased up to 350 km in rivers and stopped increasing exactly when soluble reactive phosphorus had been completely consumed, and molar carbon to phosphorus ratios of seston indicated the beginning phosphorus limitation. The concentrations of dissolved silicate and nitrate dropped below the detection limit as well. In contrast to the results from eight previous longitudinal samplings taken in 2018–2022, nitrate exhaustion was detected for the first time in 2023 within the transect. This was caused neither by an above-average phytoplankton biomass nor by a declined overall nutrient load of the river in 2018–2023. Instead, denitrification appears to be the most plausible explanation for the downstream decrease of nitrate and the loss of total nitrogen which was supported by enrichment of nitrate stable isotopes and a decreasing ratio of nitrate 15N/18O.}, note = {Online available at: \url{https://doi.org/10.1007/s10661-024-12834-5} (DOI). Kamjunke, N.; Sanders, T.: Complete exhaustion of dissolved nutrients in a large lowland river. Environmental Monitoring and Assessment. 2024. vol. 196, 660. DOI: 10.1007/s10661-024-12834-5}} @misc{vankatwijk_seagrass_recovery_2024, author={van Katwijk, M.M.,van Beusekom, J.E.E.,Folmer, E.O.,Kolbe, K.,de Jong, D.J.,Dolch, T.}, title={Seagrass recovery trajectories and recovery potential in relation to nutrient reduction}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1111/1365-2664.14704}, abstract = {1. Seagrass recovery has been reported across the globe where previously eutrophied waters have become less nutrient-rich. In the European Wadden Sea, different recovery trajectories were found after riverine nutrient loads decreased, namely full, temporary and no recovery. We compiled intertidal seagrass presence (Zostera noltei and Z. marina) and eutrophication data for 1930–2020, to relate the seagrass trajectories and regional eutrophication differences to riverine nutrient loads, and inferred prospects for seagrass recovery.,2. Seagrass fully recovered in the less eutrophic North Frisian region. The recovery trajectory was tightly coupled to riverine nutrient load reduction. Relative seagrass area (meadow area/region area) dropped from 10% prior to eutrophication to 2% during the eutrophication peak, increased to 7% during the nutrient reduction period and subsequently expanded to 13%. Colonization of marginal habitats was observed, indicating propagule spillover from neighbouring meadows.,3. The more eutrophic southern regions showed no or only temporary seagrass recovery. Prospects for (limited) recovery are good in only two out of four southern regions, provided that riverine nutrient loads are further reduced by ~40% (reference: 2010–2017). Without this reduction, seagrasses may only temporarily recover and will remain vulnerable to erratic disturbances like macroalgae accumulation or storms.,4. Historical evidence and application of habitat suitability models suggest that the potential relative seagrass area in the southern regions is low: less than 0.2% in the western Dutch region and maximum 2.4% in the Ems-Jade region.,5. Synthesis and applications. Within a large seascape (15,000 km2) the least eutrophicated region showed seagrass recovery upon nutrient reduction. We translated the critical riverine nutrient loads for this recovery, via regional eutrophication indicators, to loads that may enable a sustained recovery in the other regions. This technique is applicable in other complex systems, provided sufficient historical data are available. Propagule spillover exerts a positive feedback at metapopulation scale leading to acceleration of recovery. Occupied and potential seagrass habitat (e.g. assessed by the maximum recorded area in the past) are thus important landscape selection criteria for restoration, particularly when eutrophication is not yet sufficiently reduced.}, note = {Online available at: \url{https://doi.org/10.1111/1365-2664.14704} (DOI). van Katwijk, M.; van Beusekom, J.; Folmer, E.; Kolbe, K.; de Jong, D.; Dolch, T.: Seagrass recovery trajectories and recovery potential in relation to nutrient reduction. The Journal of Applied Ecology. 2024. vol. 61, no. 8, 1784-1804. DOI: 10.1111/1365-2664.14704}} @misc{novak_hyperspectral_measurements_2024, author={Novak, M.G.,Burmeister, H.,Röttgers, R.}, title={Hyperspectral measurements of light backscattering by particles in water with a fixed angle setup: proof of concept and instrument calibration}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1364/OE.529061}, abstract = {The light backscatter signal is the fraction of light scattered at angles greater than 90 degrees with respect to the direction of the incident light. Optical remote sensing platforms collect this signal, which, when measured from the ocean, holds crucial information about its constituents. Interpretation of this signal demands a rigorous understanding of scattering by water and by particles in water. Previous backscatter measurements have mainly focused on resolving the angular distribution of scattering with much less attention given to resolving the wavelength component of backscatter. Most heritage sensors have looked at most 9 wavelengths of light at one scattering angle. Just recently an in situ sensor was presented that can measure backscattering with a 10 nm resolution. Here, we present a laboratory hyperspectral backscatter setup capable of measuring from the ultraviolet to near-infrared wavelengths (320 - 850 nm) at 2 nm resolution.}, note = {Online available at: \url{https://doi.org/10.1364/OE.529061} (DOI). Novak, M.; Burmeister, H.; Röttgers, R.: Hyperspectral measurements of light backscattering by particles in water with a fixed angle setup: proof of concept and instrument calibration. Optics Express. 2024. vol. 32, no. 13, 23722-23735. DOI: 10.1364/OE.529061}} @misc{martens_metabarcoding_reveals_2024, author={Martens, N.,Russnak, V.,Woodhouse, J.,Grossart, H.P.,Schaum, C.E.}, title={Metabarcoding reveals Cryptophyceae and picophytoplankton as key groups of phytoplankton in the Elbe estuary}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.envres.2024.119126}, abstract = {In estuaries, phytoplankton are faced with strong environmental forcing (e.g. high turbidity, salinity gradients). Taxa that appear under such conditions may play a critical role in maintaining food webs and biological carbon pumping, but knowledge about estuarine biota remains limited. This is also the case in the Elbe estuary where the lower 70 km of the water body are largely unexplored. In the present study, we investigated the phytoplankton composition in the Elbe estuary via metabarcoding. Our aim was to identify key taxa in the unmonitored reaches of this ecosystem and compare our results from the monitored area with available microscopy data. Phytoplankton communities followed distinct seasonal and spatial patterns. Community composition was similar across methods. Contributions of key classes and genera were correlated to each other (p < 0.05) when obtained from reads and biovolume (R2 = 0.59 and 0.33, respectively). Centric diatoms (e.g. Stephanodiscus) were the dominant group - comprising on average 55 % of the reads and 66–69 % of the biovolume. However, results from metabarcoding imply that microscopy underestimates the prevalence of picophytoplankton and flagellates with a potential for mixotrophy (e.g. cryptophytes). This might be due to their small size and sensitivity to fixation agents. We argue that mixotrophic flagellates are ecologically relevant in the mid to lower estuary, where, e.g., high turbidity render living conditions rather unfavorable, and skills such as phagotrophy provide fundamental advantages. Nevertheless, further findings - e.g. important taxa missing from the metabarcoding dataset - emphasize potential limitations of this method and quantitative biases can result from varying numbers of gene copies in different taxa. Further research should address these methodological issues but also shed light on the causal relationship of taxa with the environmental conditions, also with respect to active mixotrophic behavior.}, note = {Online available at: \url{https://doi.org/10.1016/j.envres.2024.119126} (DOI). Martens, N.; Russnak, V.; Woodhouse, J.; Grossart, H.; Schaum, C.: Metabarcoding reveals Cryptophyceae and picophytoplankton as key groups of phytoplankton in the Elbe estuary. Environmental Research. 2024. vol. 252, Part 4, 119126. DOI: 10.1016/j.envres.2024.119126}} @misc{vandam_towards_a_2024, author={Van Dam, B.,Helfer, V.,Kaiser, D.,Sinemus, E.,Staneva, J.,Zimmer, M.}, title={Towards a fair, reliable, and practical verification framework for Blue Carbon-based CDR}, year={2024}, howpublished = {journal article}, doi = {https://doi.org/10.1088/1748-9326/ad5fa3}, abstract = {While the (re-)establishment of Blue Carbon Ecosystems (BCE) is seen as an important tool to mitigate climate change, the credibility of such nature-based solutions has been marred by recent revelations ranging from weak accounting to malpractice. In light of this, there is a clear need to develop monitoring, reporting and verification (MRV) systems towards the reliable, practical, and accurate accounting of additional and durable carbon dioxide removal (CDR). We propose the development of a Blue Carbon Ecosystem Digital Twin (BCE-DT) as a practical solution, integrating real-time data and models into What-If Scenarios of CDR aimed at the quantification of CDR additionality and durability. Critically, such a solution would be amenable to projects across a broad range in spatial scale and ecosytem type. In parallel, we propose the creation of an independent and not-for-profit Standards Development Organization (SDO) for the management of this Digital Twin and oversight of the certification process based on MRV. Considering the interwoven nature of the scientific and policy/legal needs we raise, an improved dialogue and collaboration between the scientific and policy communities is clearly needed. We argue that this BCE-DT, along with its oversight and implementation by a SDO, would fit this niche and support the fair and accurate implementation of MRV critically needed for BCE-based CDR to proceed.}, note = {Online available at: \url{https://doi.org/10.1088/1748-9326/ad5fa3} (DOI). Van Dam, B.; Helfer, V.; Kaiser, D.; Sinemus, E.; Staneva, J.; Zimmer, M.: Towards a fair, reliable, and practical verification framework for Blue Carbon-based CDR. Environmental Research Letters. 2024. vol. 19, 081004. DOI: 10.1088/1748-9326/ad5fa3}} @misc{rewrie_significant_shifts_2023, author={Rewrie, L.C.V.,Voynova, Y.G.,Beusekom, J.E.E.,Sanders, T.,Körtzinger, A.,Brix, H.,Ollesch, G.,Baschek, B.}, title={Significant shifts in inorganic carbon and ecosystem state in a temperate estuary (1985-2018)}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1002/lno.12395}, abstract = {Estuaries regulate carbon cycling along the land-ocean continuum and thus influence carbon export to the ocean, and global carbon budgets. The Elbe Estuary in Germany has been altered by large anthropogenic perturbations, such as widespread heavy metal pollution, minimally treated wastewater before the 1980s, establishment of wastewater treatment plants after the 1990s, and an overall nutrient and pollutant load reduction in the last three decades. Based on an extensive evaluation of key ecosystem variables, and an analysis of the available inorganic and organic carbon records, this study has identified three ecosystem states in recent history: the polluted (1985–1990), transitional (1991–1996), and recovery (1997–2018) states. The polluted state was characterized by very high dissolved inorganic carbon (DIC) and ammonium concentrations, toxic heavy metal levels, dissolved oxygen undersaturation, and low pH. During the transitional state, heavy metal pollution decreased by > 50%, and primary production re-established in spring to summer, with weak seasonality in DIC. Since 1997, during the recovery state, DIC seasonality was driven by primary production, and DIC significantly increased by > 23 μmol L−1 yr−1 in the mid to lower estuary, indicating that, along with the improvement in water quality the ecosystem state is still changing. Large anthropogenic perturbations can therefore alter estuarine ecosystems (on the order of decades), as well as induce large and complex biogeochemical shifts and significant changes to carbon cycling.}, note = {Online available at: \url{https://doi.org/10.1002/lno.12395} (DOI). Rewrie, L.; Voynova, Y.; Beusekom, J.; Sanders, T.; Körtzinger, A.; Brix, H.; Ollesch, G.; Baschek, B.: Significant shifts in inorganic carbon and ecosystem state in a temperate estuary (1985-2018). Limnology and Oceanography. 2023. vol. 68, no. 8, 1935-1920. DOI: 10.1002/lno.12395}} @misc{fettweis_sample_based_2023, author={Fettweis, M.,Riethmüller, R.,Van der Zande, D.,Desmit, X.}, title={Sample based water quality monitoring of coastal seas: How significant is the information loss in patchy time series compared to continuous ones?}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.scitotenv.2023.162273}, abstract = {The high temporal and spatial variability of tidal dominated coastal areas poses a challenge for characterising water quality. Water quality monitoring relies often on information collected by water sampling from a vessel or by satellites, and covers limited time periods and therefore limited tidal and meteorological conditions. To assess the loss of information from discrete sampling, continuous time series of one year (suspended particulate matter (SPM) concentration, SPM flux and Chlorophyll a (Chl) concentration) were used. Eight different schemes of sampling into these time series were applied that are typical for many monitoring programs. They differ in the time between sampling events (synodic or half-synodic) and the duration of the sampling (tidal cycle, half a tidal cycle, one or more samples). The information loss was quantified by applying a bootstrap method to calculate the mean and standard deviation over the considered period. These were then compared with the true mean calculated from the continuous series. The probability to match the true mean within a certain margin depends on the sampling period and the season, but it is always low, especially if the allowed uncertainty is stringent (e.g., ±2.5 % about the true mean). For the SPM concentration this probability is lower than 10 % and for Chl concentration lower than 20 %. Similarly, conclusions arise for the detection of trends in a 20 year time series of SPM concentration with an artificial yearly increase of 0.5 %. None of the sampling schemes was able to assess statistical significant interannual trends with probabilities above 60 %. Further, the significant trends overestimated the increase by a factor 2 to 8. Here, present modus operandi is thus inadequate for basic trend detection, but may be acceptable for the more marine, lower turbid areas where higher probabilities were obtained in this study.}, note = {Online available at: \url{https://doi.org/10.1016/j.scitotenv.2023.162273} (DOI). Fettweis, M.; Riethmüller, R.; Van der Zande, D.; Desmit, X.: Sample based water quality monitoring of coastal seas: How significant is the information loss in patchy time series compared to continuous ones?. Science of the Total Environment. 2023. vol. 873, 162273. DOI: 10.1016/j.scitotenv.2023.162273}} @misc{walsh_the_bear_2023, author={Walsh, M.J.,Carlson, D.F.,Tejsner, P.,Thomsen, S.}, title={The Bear Trap: Reinvestigation of a unique stone structure on the northwest tip of the Nuussuaq Peninsula, Greenland}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.3368/aa.58.2.200}, abstract = {A dry-stone structure known as the Bear Trap—“Bjørnefælden” in Danish and “Putdlagssuaq” (The Great Trap) in the local Greenlandic Kalaallisut—is a unique and enigmatic feature on the Arctic landscape of the Nuussuaq Peninsula in northwestern Greenland. Despite its suggestive name, the intended function of the Bear Trap has been the subject of scholarly debate since 1740. Here we present new findings on the Bear Trap, update the archaeological context of the site and its surroundings, and present the first three-dimensional (3D) digital reconstruction of the site and its surroundings. Investigations of the Bear Trap and its surroundings during the summer of 2019 revealed previously undocumented graves in the vicinity. Based on the newly discovered graves and quantitative data extracted from the 3D models, we concur with previous scholarly speculations (e.g., Rosenkrantz 1967) that the Bear Trap was possibly used as a grave or possible cenotaph rather than as a skemma, the typical stone storage structure of the Greenland Norse. In addition, we demonstrate the use of 3D modeling to digitally preserve cultural heritage in the rapidly changing Arctic and permit remote, quantitative analysis of archaeological sites.}, note = {Online available at: \url{https://doi.org/10.3368/aa.58.2.200} (DOI). Walsh, M.; Carlson, D.; Tejsner, P.; Thomsen, S.: The Bear Trap: Reinvestigation of a unique stone structure on the northwest tip of the Nuussuaq Peninsula, Greenland. Arctic Anthropology. 2023. vol. 58, no. 2, 200-217. DOI: 10.3368/aa.58.2.200}} @misc{vanoostende_global_ocean_2023, author={van Oostende, M.,Hieronymi, M.,Krasemann, H.,Baschek, B.}, title={Global ocean colour trends in biogeochemical provinces}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2023.1052166}, abstract = {Satellite-derived ocean colour data provide continuous, daily measurements of global waters and are an essential tool for monitoring these waters in a changing climate. Merging observations from different satellite sensors is necessary for long-term and continuous climate research because the lifetime of these sensors is limited. A key issue in deriving long-term trends from merged ocean colour data is the inconsistency between the spatiotemporal coverage of the different sensor datasets that can lead to spurious multi-year fluctuations or trends in the time series. This study used the merged ocean colour satellite dataset produced by the Ocean Colour Climate Change Initiative (OC-CCI version 6.0) to infer global and local trends in optically active constituents. We applied a novel correction method to the OC-CCI dataset that results in a spatiotemporally consistent dataset, allowing the examination of long-term trends of optically active constituents with greater accuracy. We included sea surface temperature, salinity, and several climate oscillations in our analysis to gain insight into the underlying processes of derived trends. Our results indicate a significant increase in chlorophyll-a concentration in the polar waters, a decrease in chlorophyll-a concentration in some equatorial waters, and point to ocean darkening, predominantly in the polar waters, due to an increase in non-phytoplankton absorption. This study contributes to broader knowledge of global trends of optically active constituents and their relation to a changing environment.}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2023.1052166} (DOI). van Oostende, M.; Hieronymi, M.; Krasemann, H.; Baschek, B.: Global ocean colour trends in biogeochemical provinces. Frontiers in Marine Science. 2023. vol. 10, 1052166. DOI: 10.3389/fmars.2023.1052166}} @misc{lehmann_alkalinity_responses_2023, author={Lehmann, N.,Stacke, T.,Lehmann, S.,Lantuit, H.,Gosse, J.,Mears, C.,Hartmann, J.,Thomas, H.}, title={Alkalinity responses to climate warming destabilise the Earth´s thermostat}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1038/s41467-023-37165-w}, abstract = {Alkalinity generation from rock weathering modulates Earth’s climate at geological time scales. Although lithology is thought to dominantly control alkalinity generation globally, the role of other first-order controls appears elusive. Particularly challenging remains the discrimination of climatic and erosional influences. Based on global observations, here we uncover the role of erosion rate in governing riverine alkalinity, accompanied by areal proportion of carbonate, mean annual temperature, catchment area, and soil regolith thickness. We show that the weathering flux to the ocean will be significantly altered by climate warming as early as 2100, by up to 68% depending on the environmental conditions, constituting a sudden feedback of ocean CO2 sequestration to climate. Interestingly, warming under a low-emissions scenario will reduce terrestrial alkalinity flux from mid-latitudes (–1.6 t(bicarbonate) a−1 km−2) until the end of the century, resulting in a reduction in CO2 sequestration, but an increase (+0.5 t(bicarbonate) a−1 km−2) from mid-latitudes is likely under a high-emissions scenario, yielding an additional CO2 sink.}, note = {Online available at: \url{https://doi.org/10.1038/s41467-023-37165-w} (DOI). Lehmann, N.; Stacke, T.; Lehmann, S.; Lantuit, H.; Gosse, J.; Mears, C.; Hartmann, J.; Thomas, H.: Alkalinity responses to climate warming destabilise the Earth´s thermostat. Nature Communications. 2023. vol. 14, 1648. DOI: 10.1038/s41467-023-37165-w}} @misc{rick_an_evaluation_2023, author={Rick, J.J.,Scharfe, M.,Romanova, T.,van Beusekom, J.E.E.,Asmus, R.,Asmus, H.,Mielck, F.,Kamp, A.,Sieger, R.,Wiltshire, K.H.}, title={An evaluation of long-term physical and hydrochemical measurements at the Sylt Roads Marine Observatory (1973–2019), Wadden Sea, North Sea}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.5194/essd-15-1037-2023}, abstract = {he Sylt Roads pelagic time series covers physical and hydrochemical parameters at five neighboring stations in the Sylt–Rømø bight, Wadden Sea, North Sea. Since the beginning of the time series in 1973, sea surface temperature (SST), salinity, ammonium, nitrite, nitrate, and soluble reactive phosphorus (SRP) have been measured twice a week. The other parameters were introduced later (dissolved silicate (Si) since 1974, pH since 1979, dissolved organic nitrogen (DON) since 1996, dissolved organic phosphorus (DOP) since 2001, chlorophyll a since 1979, and suspended particulate matter (SPM) since 1975), and in the case of dissolved oxygen, were already discontinued (1979–1983). In the years 1977, 1978, and 1983, no sampling took place. Since the start of the continuous sampling in 1984, the sea surface temperature in the bight has risen by +1.11 ∘C, with the highest increases during the autumn months, while the pH and salinity decreased by 0.23 and 0.33 units, respectively. Summer and autumn salinities are generally significantly elevated compared to spring and winter conditions. Dissolved nutrients (ammonium, nitrite, nitrate, and SRP) have displayed periods of intense eutrophication (1973–1998) and de-eutrophication since 1999. Silicate has shown significantly higher winter levels since 1999. Interestingly, phytoplankton parameters did not mirror these large changes in nutrient concentrations, as a seasonal comparison of the two eutrophication periods showed no significant differences with regard to chlorophyll a. This phenomenon might be triggered by an important switch in nutrient limitation during the time series. With regard to nutrients, the phytoplankton was probably primarily limited by silicate until 1998, while, since 1999, the SRP limitation has become increasingly important. All data are available in Rick et al. (2017b–e, 2020a–o) from https://doi.org/10.1594/PANGAEA.150032, https://doi.org/10.1594/PANGAEA.873549, https://doi.org/10.1594/PANGAEA.873545,,https://doi.org/10.1594/PANGAEA.873547, https://doi.org/10.1594/PANGAEA.918018,,https://doi.org/10.1594/PANGAEA.918032, https://doi.org/10.1594/PANGAEA.918027,,https://doi.org/10.1594/PANGAEA.918023, https://doi.org/10.1594/PANGAEA.918033,,https://doi.org/10.1594/PANGAEA.918028, https://doi.org/10.1594/PANGAEA.918024,,https://doi.org/10.1594/PANGAEA.918034, https://doi.org/10.1594/PANGAEA.918029,,https://doi.org/10.1594/PANGAEA.918025, https://doi.org/10.1594/PANGAEA.918035,,https://doi.org/10.1594/PANGAEA.918030, https://doi.org/10.1594/PANGAEA.918026,,https://doi.org/10.1594/PANGAEA.918036, and https://doi.org/10.1594/PANGAEA.918031.}, note = {Online available at: \url{https://doi.org/10.5194/essd-15-1037-2023} (DOI). Rick, J.; Scharfe, M.; Romanova, T.; van Beusekom, J.; Asmus, R.; Asmus, H.; Mielck, F.; Kamp, A.; Sieger, R.; Wiltshire, K.: An evaluation of long-term physical and hydrochemical measurements at the Sylt Roads Marine Observatory (1973–2019), Wadden Sea, North Sea. Earth System Science Data. 2023. vol. 15, no. 3, 1037-1057. DOI: 10.5194/essd-15-1037-2023}} @misc{elkassar_optical_remote_2023, author={El Kassar, J.,Juhls, B.,Hieronymi, M.,Preusker, R.,Morgenstern, A.,Fischer, J.,Overduin, P.P.}, title={Optical remote sensing (Sentinel 3 OLCI) used to monitor dissolved organic carbon in the Lena River, Russia}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2023.1082109}, abstract = {In the past decades the Arctic has experienced stronger temperature increases than any other region globally. Shifts in hydrological regimes and accelerated permafrost thawing have been observed and are likely to increase mobilization of organic carbon and its transport through rivers into the Arctic Ocean. In order to better quantify changes to the carbon cycle, Arctic rivers such as the Lena River in Siberia need to be monitored closely. Since 2018, a sampling program provides frequent in situ observations of dissolved organic carbon (DOC) and colored dissolved organic matter (CDOM) of the Lena River. Here, we utilize this ground truth dataset and aim to test the potential of frequent satellite observations to spatially and temporally complement and expand these observations. We explored all available overpasses (~3250) of the Ocean and Land Colour Instrument (OLCI) on Sentinel-3 within the ice-free periods (May – October) for four years (2018 to 2021) to develop a new retrieval scheme to derive concentrations of DOC. OLCI observations with a spatial resolution of ~300 m were corrected for atmospheric effects using the Polymer algorithm. The results of this study show that using this new retrieval, remotely sensed DOC concentrations agree well with in situ DOC concentrations (MAPD=10.89%, RMSE=1.55 mg L−1, r²=0.92, n=489). The high revisit frequency and wide swath of OLCI allow it to capture the entire range of DOC concentrations and their seasonal variability. Estimated satellite-derived DOC export fluxes integrated over the ice-free periods of 2018 to 2021 show a high interannual variability and agree well with flux estimates from in situ data (RMSD=0.186 Tg C, MAPD=4.05%). In addition, 10-day OLCI composites covering the entire Lena River catchment revealed increasing DOC concentration and local sources of DOC along the Lena from south to north. We conclude that moderate resolution satellite imagers such as OLCI are very capable of observing DOC concentrations in large/wide rivers such as the Lena River despite the relatively coarse spatial resolution. The global coverage of remote sensing offers the expansion to more rivers in order to improve our understanding of the land-ocean carbon fluxes in a changing climate.}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2023.1082109} (DOI). El Kassar, J.; Juhls, B.; Hieronymi, M.; Preusker, R.; Morgenstern, A.; Fischer, J.; Overduin, P.: Optical remote sensing (Sentinel 3 OLCI) used to monitor dissolved organic carbon in the Lena River, Russia. Frontiers in Marine Science. 2023. vol. 10, 1082109. DOI: 10.3389/fmars.2023.1082109}} @misc{brewin_ocean_carbon_2023, author={Brewin, R.J.W.,Sathyendranath, S.,Kulk, G.,Rio, M.-H.,Concha, J.A.,Bell, T.G.,Bracher, A.,Fichot, C.,Frölicher, T.L.,Galí, M.,Hansell, D. A.,Kostadinov, T.S.,Mitchell, C.,Neeley, A.R.,Organelli, E.,Richardson, K.,Rousseaux, C.,Shen, F.,Stramski, D.,Tzortziou, M.,Watson, A.J.,Addey, C.I.,Bellacicco, M.,Bouman, H.,Carroll, D.,Cetinić, I.,Dall’Olmo, G.,Frouin, R.,Hauck, J.,Hieronymi, M.,Hu, C.,Ibello, V.,Jönsson, B.,Kong, C.E.,Kovač, Ž.,Laine, M.,Lauderdale, J.,Lavender, S.,Livanou, E.,Llort, J.,Lorinczi, L.,Nowicki, M.,Pradisty, N.A.,Psarra, S.,Raitsos, D.E.,Ruescas, A.B.,Russell, J.L.,Salisbury, J.,Sanders, R.,Shutler, J.D.,Sun, X.,Taboada, F.G.,Tilstone, G.,Wei, X.,Woolf, D.K.}, title={Ocean carbon from space: current status and priorities for the next decade}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.earscirev.2023.104386}, abstract = {The ocean plays a central role in modulating the Earth’s carbon cycle. Monitoring how the ocean carbon cycle is changing is fundamental to managing climate change. Satellite remote sensing is currently our best tool for viewing the ocean surface globally and systematically, at high spatial and temporal resolutions, and the past few decades have seen an exponential growth in studies utilising satellite data for ocean carbon research. Satellite-based observations must be combined with in situ observations and models, to obtain a comprehensive view of ocean carbon pools and fluxes. To help prioritise future research in this area, a workshop was organised that assembled leading experts working on the topic, from around the world, including remote-sensing scientists, field scientists and modellers, with the goal to articulate a collective view of the current status of ocean carbon research, identify gaps in knowledge, and formulate a scientific roadmap for the next decade, with an emphasis on evaluating where satellite remote sensing may contribute. A total of 449 scientists and stakeholders participated (with balanced gender representation), from North and South America, Europe, Asia, Africa, and Oceania. Sessions targeted both inorganic and organic pools of carbon in the ocean, in both dissolved and particulate form, as well as major fluxes of carbon between reservoirs (e.g., primary production) and at interfaces (e.g., air-sea and land–ocean). Extreme events, blue carbon and carbon budgeting were also key topics discussed. Emerging priorities identified include: expanding the networks and quality of in situ observations; improved satellite retrievals; improved uncertainty quantification; improved understanding of vertical distributions; integration with models; improved techniques to bridge spatial and temporal scales of the different data sources; and improved fundamental understanding of the ocean carbon cycle, and of the interactions among pools of carbon and light. We also report on priorities for the specific pools and fluxes studied, and highlight issues and concerns that arose during discussions, such as the need to consider the environmental impact of satellites or space activities; the role satellites can play in monitoring ocean carbon dioxide removal approaches; economic valuation of the satellite based information; to consider how satellites can contribute to monitoring cycles of other important climatically-relevant compounds and elements; to promote diversity and inclusivity in ocean carbon research; to bring together communities working on different aspects of planetary carbon; maximising use of international bodies; to follow an open science approach; to explore new and innovative ways to remotely monitor ocean carbon; and to harness quantum computing. Overall, this paper provides a comprehensive scientific roadmap for the next decade on how satellite remote sensing could help monitor the ocean carbon cycle, and its links to the other domains, such as terrestrial and atmosphere.}, note = {Online available at: \url{https://doi.org/10.1016/j.earscirev.2023.104386} (DOI). Brewin, R.; Sathyendranath, S.; Kulk, G.; Rio, M.; Concha, J.; Bell, T.; Bracher, A.; Fichot, C.; Frölicher, T.; Galí, M.; Hansell, D.; Kostadinov, T.; Mitchell, C.; Neeley, A.; Organelli, E.; Richardson, K.; Rousseaux, C.; Shen, F.; Stramski, D.; Tzortziou, M.; Watson, A.; Addey, C.; Bellacicco, M.; Bouman, H.; Carroll, D.; Cetinić, I.; Dall’Olmo, G.; Frouin, R.; Hauck, J.; Hieronymi, M.; Hu, C.; Ibello, V.; Jönsson, B.; Kong, C.; Kovač, Ž.; Laine, M.; Lauderdale, J.; Lavender, S.; Livanou, E.; Llort, J.; Lorinczi, L.; Nowicki, M.; Pradisty, N.; Psarra, S.; Raitsos, D.; Ruescas, A.; Russell, J.; Salisbury, J.; Sanders, R.; Shutler, J.; Sun, X.; Taboada, F.; Tilstone, G.; Wei, X.; Woolf, D.: Ocean carbon from space: current status and priorities for the next decade. Earth-Science Reviews. 2023. vol. 240, 104386. DOI: 10.1016/j.earscirev.2023.104386}} @misc{carlson_mapping_intertidal_2023, author={Carlson, D.,Vivó-Pons, A.,Treier, U.,Mätzler, E.,Meire, L.,Sejr, M.,Krause-Jensen, D.}, title={Mapping intertidal macrophytes in fjords in Southwest Greenland using Sentinel-2 imagery}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.scitotenv.2022.161213}, abstract = {Changes in the distribution of coastal macrophytes in Greenland, and elsewhere in the Arctic are difficult to quantify as the region remains challenging to access and monitor. Satellite imagery, in particular Sentinel-2 (S2), may enable large-scale monitoring of coastal areas in Greenland but its use is impacted by the optically complex environments and the scarcity of supporting data in the region. Additionally, the canopies of the dominant macrophyte species in Greenland do not extend to the sea surface, limiting the use of indices that exploit the reflection of near-infrared radiation by vegetation due to its absorption by seawater. Three hypotheses are tested: I) 10-m S2 imagery and commonly used detection methods can identify intertidal macrophytes that are exposed at low tide in an optically complex fjord system in Greenland impacted by marine and land terminating glaciers; II) detached and floating macrophytes accumulate in patches that are sufficiently large to be detected by 10-m S2 images; III) iceberg scour and/or turbid meltwater runoff shape the spatial distribution of intertidal macroalgae in fjord systems with marine-terminating glaciers. The NDVI produced the best results in optically complex fjord systems in Greenland. 12 km2 of exposed intertidal macrophytes were identified in the study area at low tide. Floating mats of macrophytes ranged in area from 400 m2 to 326,800 m2 and were most common at the mouth of the fjord. Icebergs and turbidity appear to play a role in structuring the distribution of intertidal macrophytes and the retreat of marine terminating glaciers could allow macrophytes cover to expand. The challenges and solutions presented here apply to most fjords in Greenland and, therefore, the methodology may be extended to produce a Greenland-wide estimate of intertidal macrophytes.}, note = {Online available at: \url{https://doi.org/10.1016/j.scitotenv.2022.161213} (DOI). Carlson, D.; Vivó-Pons, A.; Treier, U.; Mätzler, E.; Meire, L.; Sejr, M.; Krause-Jensen, D.: Mapping intertidal macrophytes in fjords in Southwest Greenland using Sentinel-2 imagery. Science of the Total Environment. 2023. vol. 865, 161213. DOI: 10.1016/j.scitotenv.2022.161213}} @misc{bi_transfer_model_2023, author={Bi, S.,Röttgers, R.,Hieronymi, M.}, title={Transfer model to determine the above-water remote-sensing reflectance from the underwater remote-sensing ratio}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1364/OE.482395}, abstract = {Remote-sensing reflectance, Rrs(λ, θ, Δϕ, θs), contains the spectral color information of the water body below the sea surface and is a fundamental parameter to derive satellite ocean color products such as chlorophyll-a, diffuse light attenuation, or inherent optical properties. Water reflectance, i.e., spectral upwelling radiance, normalized by the downwelling irradiance, can be measured under- or above-water. Several models to extrapolate this ratio from underwater “remote-sensing ratio”, rrs(λ), to the above-water Rrs, have been proposed in previous studies, in which the spectral dependency of water refractive index and off-nadir viewing directions have not been considered in detail. Based on measured inherent optical properties of natural waters and radiative transfer simulations, this study proposes a new transfer model to spectrally determine Rrs from rrs for different sun-viewing geometries and environmental conditions. It is shown that, compared to previous models, ignoring spectral dependency leads to a bias of ∼2.4% at shorter wavelengths (∼400 nm), which is avoidable. If nadir-viewing models are used, the typical 40°-off nadir viewing geometry will introduce a difference of ∼5% in Rrs estimation. When the solar zenith angle is higher than 60°, these differences of Rrs have implications for the downstream retrievals of ocean color products, e.g., > 8% difference for phytoplankton absorption at 440 nm and >4% difference for backward particle scattering at 440 nm by the quasi-analytical algorithm (QAA). These findings demonstrate that the proposed rrs-to-Rrs model is applicable to a wide range of measurement conditions and provides more accurate estimates of Rrs than previous models.}, note = {Online available at: \url{https://doi.org/10.1364/OE.482395} (DOI). Bi, S.; Röttgers, R.; Hieronymi, M.: Transfer model to determine the above-water remote-sensing reflectance from the underwater remote-sensing ratio. Optics express. 2023. vol. 31, no. 6, 10512-10524. DOI: 10.1364/OE.482395}} @misc{ager_macroalgal_habitats_2023, author={Ager, T.G.,Krause-Jensen, D.,Olesen, B.,Carlson, D.F.,Winding, M.H.S.,Sejr, M.K.}, title={Macroalgal habitats support a sustained flux of floating biomass but limited carbon export beyond a Greenland fjord}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.scitotenv.2023.162224}, abstract = {Despite growing attention on the contribution of macroalgae to carbon cycling and sequestration (blue carbon), more observational data is needed to constrain current estimates. In this study, we estimate the floating macroalgal carbon flux within and beyond a large sub-Arctic fjord system, Nuup Kangerlua, Greenland, which could potentially reach carbon sinks. Our study estimates 1) the fjord-scale area with macroalgal coverage and barrens caused by sea urchin grazing, 2) the floating macroalgal biomass in the fjord, and 3) the annual export flux of floating macroalgae out of the fjord system. ROV surveys documented that macroalgal habitats cover 32 % of the seafloor within the photic zone (0-30 m) with an average coverage of 39.6, 22, and 7.2 % in the depth intervals 0–10, 10–20, and 20-30 m, respectively. 15 % of the area suitable for macroalgae was denuded by sea urchin grazing. Floating macroalgae were common with an average biomass of 55 kg wet weight km−2. Densities and species composition varied seasonally with the highest levels after storms. The floating biomass was composed of intertidal macroalgal species (58 %) (Fucus vesiculosus, Fucus distichus, and Ascophyllum nodosum) and kelps (42 %) (Saccharina longicruris, S. latissima, and Alaria esculenta). We deployed surface GPS drifters to simulate floating macroalgal trajectories and velocity. Data indicated that 80 % of the floating biomass is retained in the fjord where its fate in relation to long-term sequestration is unknown. Export beyond the fjord was limited and indicated an annual floating macroalgal export beyond the fjord of only 6.92 t C yr−1, which is equal to ~0.02 % of the annual net primary production. Our findings suggest that floating macroalgae support a limited blue carbon potential beyond this fjord and that future research should focus on the fate of retained floating macroalgae and subsurface export to resolve the connectivity between macroalgal habitats and long-term carbon sinks.}, note = {Online available at: \url{https://doi.org/10.1016/j.scitotenv.2023.162224} (DOI). Ager, T.; Krause-Jensen, D.; Olesen, B.; Carlson, D.; Winding, M.; Sejr, M.: Macroalgal habitats support a sustained flux of floating biomass but limited carbon export beyond a Greenland fjord. Science of the Total Environment. 2023. vol. 872, 162224. DOI: 10.1016/j.scitotenv.2023.162224}} @misc{calil_highresolution_basinscale_2023, author={Calil, P.}, title={High-Resolution, Basin-Scale Simulations Reveal the Impact of Intermediate Zonal Jets on the Atlantic Oxygen Minimum Zones}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1029/2022MS003158}, abstract = {Eastward zonal jets at intermediate depths of 300–800 m connect the oxygen-rich western boundary of the Atlantic basin with the oxygen minimum zones (OMZs) on the eastern boundary. They are not well represented in climate models because the low horizontal resolution of these models yields excessive viscosity. We use two physical-biogeochemical model configurations of the Tropical Atlantic to show that the increase in resolution results in more robust intermediate zonal jets and a better representation of the OMZs. The OMZ structure is distorted at low-resolution as surface, westward jets advect low-oxygen waters from the eastern boundary much further west than in the climatology. The emergence of robust eastward jets in the high-resolution run alleviate this problem and reproduce the Atlantic OMZs more accurately. The asymmetry between westward and eastward jets occurs because the former are associated with homogenous potential vorticity regions originating in the eastern boundary while the latter are associated with potential vorticity gradients. Intermediate, eastward jets constrain the westward expansion of the OMZs by supplying oxygen to their western edge. Within the OMZs, higher resolution allows a better representation of the boundary current system and eddying processes at depth which redistribute of low oxygen values from the productive eastern boundary. Basin-scale, high-resolution simulations reproduce more accurately the transfer of energy across scales that results in robust zonal jets as well as their impact on the ocean biogeochemistry. Accurate model predictions provide a pathway to disentangle natural and anthropogenic causes of ocean deoxygenation.}, note = {Online available at: \url{https://doi.org/10.1029/2022MS003158} (DOI). Calil, P.: High-Resolution, Basin-Scale Simulations Reveal the Impact of Intermediate Zonal Jets on the Atlantic Oxygen Minimum Zones. Journal of Advances in Modeling Earth Systems : JAMES. 2023. vol. 15, no. 2, e2022MS003158. DOI: 10.1029/2022MS003158}} @misc{koziorowskamakuch_the_marine_2023, author={Koziorowska-Makuch, K.,Szymczycha, B.,Thomas, H.,Kulinski, K.}, title={The marine carbonate system variability in high meltwater season (Spitsbergen Fjords, Svalbard)}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.pocean.2023.102977}, abstract = {The spatial variability in hydrography (salinity and temperature) and carbonate chemistry (alkalinity - AT, total inorganic carbon concentration - CT, pH, CO2 partial pressure - pCO2, and the saturation state of aragonite - ΩAr) in high meltwater season (summer) was investigated in four Spitsbergen fjords - Krossfjorden, Kongsfjorden, Isfjorden, and Hornsund. It was found that the differences in hydrology entail spatial changes in the CO2 system structure. AT decline with decreasing salinity was evident, hence it is clear that freshwater input generally has a diluting effect and lowers AT in the surface waters of the Spitsbergen fjords. Significant surface water AT variability (1889–2261 µmol kg−1) reveals the complexity of the fjords’ systems with multiple freshwater sources having different alkalinity end-member characteristics and identifies the mean AT freshwater end-member of 595 ± 84 µmol kg−1 for the entire region. The effect of AT fluxes from sediments on the bottom water was rather insignificant, despite high AT values (2288–2666 μmol kg−1) observed in the pore waters. Low pCO2 results in surface water (200–295 μatm) points to intensive biological production, which can strongly affect the CT values, however, is less important for shaping alkalinity. It has also been shown that the freshening of the surface water in the fjords reduces significantly ΩAr (an increase in freshwater fraction contribution by 1% causes a decrease in ΩAr by 0.022). Although during the polar day, due to low pCO2, ΩAr values are still rather far from 1 (they ranged from 1.4 to 2.5), during polar night, when pCO2 values are much higher, ΩAr may drop markedly. This study highlights that the use of salinity to estimate the potential alkalinity can carry a high uncertainty, while good recognition of the surface water AT variability and its freshwater end-members is key to predict marine CO2 system changes along with the ongoing freshening of fjords waters due to climate warming.}, note = {Online available at: \url{https://doi.org/10.1016/j.pocean.2023.102977} (DOI). Koziorowska-Makuch, K.; Szymczycha, B.; Thomas, H.; Kulinski, K.: The marine carbonate system variability in high meltwater season (Spitsbergen Fjords, Svalbard). Progress in Oceanography. 2023. vol. 211, 102977. DOI: 10.1016/j.pocean.2023.102977}} @misc{callies_extreme_separations_2023, author={Callies, U.,von Storch, H.}, title={Extreme separations of bottle posts in the southern Baltic Sea –tentative interpretation of an experiment-of-opportunity}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.oceano.2022.11.004}, abstract = {During an experiment-of-opportunity in July 2019, 27 drift bottles were released in the southern Baltic Sea. Ten of these bottles were found and reported at locations that were surprisingly widespread. In this study, we explore the chances to reproduce these findings with a numerical drift model. While trajectories may be considered as completely deterministic, in practice their prediction as well as reconstruction has a strong stochastic component, because of ubiquitous gradients on even the smallest scales. We illustrate different aspects of uncertainty including specification of leeway, random dispersion, and stretching along Lagrangian coherent structures. By and large, the results of numerical ensemble simulations seem to be in reasonable agreement with the observational evidence available. Some drift bottle findings suggest a bias in simulations, but without knowing the drift bottles’ full drift paths, a basis for more detailed model tuning is missing.}, note = {Online available at: \url{https://doi.org/10.1016/j.oceano.2022.11.004} (DOI). Callies, U.; von Storch, H.: Extreme separations of bottle posts in the southern Baltic Sea –tentative interpretation of an experiment-of-opportunity. Oceanologia. 2023. vol. 65, no. 2, 410-422. DOI: 10.1016/j.oceano.2022.11.004}} @misc{deschner_submerged_marine_2023, author={Deschner, S.,Kock, T.,Schelwat, H.,Baschek, B.}, title={Submerged marine towed instrument array: A theoretical investigation using Lagrange mechanics}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.oceaneng.2022.113201}, abstract = {Towed instrument arrays (TIA) measure physical data in the ocean surface boundary layer (OSBL). The TIA consists of,probes mounted on a cable and towed behind a vessel. The comparably low interpolation errors of the two-dimensional results vastly enrich research on ocean energy dissipation.,Here, we develop a new theoretical framework considering the mounted probes and their effects on the dynamics of the TIA in analogy to multiple pendulums on a moving suspension point. The dynamics are induced by external velocity-dependent drag- and coordinate-dependent depressor forces.,We show that our method of including nonlinear drag forces is consistent and that our discrete approach is capable of computing continuous solutions in the limit,. Hence, the proposed method unifies earlier approaches and is tested against several analytical and known numerical solutions. The phase space for the case,is similar to that of a damped harmonic oscillator. A typical timescale estimates the equilibrium state of the dynamical system. We provide evidence of our method by comparing the results with real measurement data.,Based on the theoretical investigations, test cases, and the comparison with real data, our method is a powerful tool, suitable for campaign planning, instrument design, and post-processing purposes.}, note = {Online available at: \url{https://doi.org/10.1016/j.oceaneng.2022.113201} (DOI). Deschner, S.; Kock, T.; Schelwat, H.; Baschek, B.: Submerged marine towed instrument array: A theoretical investigation using Lagrange mechanics. Ocean Engineering. 2023. vol. 267, 113201. DOI: 10.1016/j.oceaneng.2022.113201}} @misc{farrell_the_interplay_2023, author={Farrell, E.,Beermann, J.,Neumann, A.,Wrede, A.}, title={The interplay of temperature and algal enrichment intensifies bioturbation of the intertidal amphipod Corophium volutator}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.jembe.2022.151837}, abstract = {Bioturbation is a central transport process for ecosystem functioning, especially in large soft sediment habitats like the Wadden Sea. The amphipod C. volutator is a dominant bioturbator in the Wadden Sea, due to its great abundance and almost continuous particle movement. Expedition or loss of its bioturbation activity could thus hold ramifications for ecosystem functioning within sediments, like carbon sequestration and nutrient recycling. Here we test the effect that temperature and organic enrichment have on the bioturbation of C. volutator; two prevalent abiotic factors in the Corophiid's habitat that have fluctuated over recent decades, and are expected to change in the future. In-situ experiments were conducted under 8 and 15 °C, with varying levels (0 g, 0.1 g, and 0.2 g) of powdered Ulva compressa enriching cores containing C. volutator. We found a significant interaction effect of temperature and organic enrichment on the bioturbation rate of the amphipod, with bioturbation only increasing with added organic enrichment at 15 °C. Further, a threshold within our experiments was also reached under 15 °C, where the amphipod ceased to expedite bioturbation under higher organic enrichment. This upper limit on this dominant bioturbation imposed with organic enrichment emphasizes the sensitivity of C. volutator. Our findings reveal bioturbation can be limited by temperature in colder months, and opposingly, limited by organic enrichment under warmer conditions. In future Wadden Sea scenarios where temperature is predicted to be warmer and winters milder, enhanced bioturbation activity by C. volutator could prove crucial in continued ecosystem functions.}, note = {Online available at: \url{https://doi.org/10.1016/j.jembe.2022.151837} (DOI). Farrell, E.; Beermann, J.; Neumann, A.; Wrede, A.: The interplay of temperature and algal enrichment intensifies bioturbation of the intertidal amphipod Corophium volutator. Journal of Experimental Marine Biology and Ecology. 2023. vol. 559, 151837. DOI: 10.1016/j.jembe.2022.151837}} @misc{ogneva_particulate_organic_2023, author={Ogneva, O.,Mollenhauer, G.,Juhls, B.,Sanders, T.,Palmtag, J.,Fuchs, M.,Grotheer, H.,Mann, P.J.,Strauss, J.}, title={Particulate organic matter in the Lena River and its Delta: From the permafrost catchment to the Arctic Ocean}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-20-1423-2023}, abstract = {Rapid Arctic warming accelerates permafrost thaw, causing an additional release of terrestrial organic matter (OM) into rivers and, ultimately, after transport via deltas and estuaries, to the Arctic Ocean nearshore. The majority of our understanding of nearshore OM dynamics and fate has been developed from freshwater rivers despite the likely impact of highly dynamic estuarine and deltaic environments on the transformation, storage, and age of OM delivered to coastal waters. Here, we studied particulate organic carbon (POC) dynamics in the Lena River delta and compared them with POC dynamics in the Lena River main stem along a ∼ 1600 km long transect from Yakutsk, downstream to the delta. We measured POC, total suspended matter (TSM), and carbon isotopes (δ13C and Δ14C) in POC to compare riverine and deltaic OM composition and changes in OM source and fate during transport offshore. We found that TSM and POC concentrations decreased by 70 % during transit from the main stem to the delta and Arctic Ocean. We found deltaic POC to be strongly depleted in 13C relative to fluvial POC. Dual-carbon (Δ14C and δ13C) isotope mixing model analyses indicated a significant phytoplankton contribution to deltaic POC (∼ 68 ± 6 %) and suggested an additional input of permafrost-derived OM into deltaic waters (∼ 18 ± 4 % of deltaic POC originates from Pleistocene deposits vs. ∼ 5 ± 4 % in the river main stem). Despite the lower concentration of POC in the delta than in the main stem (0.41 ± 0.10 vs. 0.79 ± 0.30 mg L−1, respectively), the amount of POC derived from Yedoma deposits in deltaic waters was almost twice as large as the amount of POC of Yedoma origin in the main stem (0.07 ± 0.02 and 0.04 ± 0.02 mg L−1, respectively). We assert that estuarine and deltaic processes require consideration in order to correctly understand OM dynamics throughout Arctic nearshore coastal zones and how these processes may evolve under future climate-driven change.}, note = {Online available at: \url{https://doi.org/10.5194/bg-20-1423-2023} (DOI). Ogneva, O.; Mollenhauer, G.; Juhls, B.; Sanders, T.; Palmtag, J.; Fuchs, M.; Grotheer, H.; Mann, P.; Strauss, J.: Particulate organic matter in the Lena River and its Delta: From the permafrost catchment to the Arctic Ocean. Biogeosciences. 2023. vol. 20, no. 7, 1423–1441. DOI: 10.5194/bg-20-1423-2023}} @misc{bi_biogeooptical_modeling_2023, author={Bi, S.,Hieronymi, M.,Röttgers, R.}, title={Bio-geo-optical modeling of natural waters}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2023.1196352}, abstract = {The color of natural waters – oceanic, coastal, and inland – is determined by the spectral absorption and scattering properties of dissolved and particulate water constituents. Remote sensing of aquatic ecosystems requires a comprehensive understanding of these inherent optical properties (IOPs), their interdependencies, and their impact on ocean (water) color, i.e., remote-sensing reflectance. We introduce a bio-geo-optical model for natural waters that includes revised spectral absorption and scattering parameterizations, based on a comprehensive analysis of precisely measured IOPs and water constituents. In addition, specific IOPs of the most significant phytoplankton groups are modeled and a system is proposed to represent the optical variability of phytoplankton diversity and community structures. The model provides a more accurate representation of the relationship between bio-geo-optical properties and can better capture optical variability across different water types. Based on the evaluation both using the training and independent testing data, our model demonstrates an accuracy of within ±5% for most component IOPs throughout the visible spectrum. We also discuss the potential of this model for radiative transfer simulations and building a comprehensive synthetic dataset especially for optically complex waters. Such datasets are the crucial basis for the development of satellite-based ocean (water) color algorithms and atmospheric correction methods. Our model reduces uncertainties in ocean color remote sensing by enhancing the distinction of optically active water constituents and provides a valuable tool for predicting the optical properties of natural waters across different water types.}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2023.1196352} (DOI). Bi, S.; Hieronymi, M.; Röttgers, R.: Bio-geo-optical modeling of natural waters. Frontiers in Marine Science. 2023. vol. 10, 1196352. DOI: 10.3389/fmars.2023.1196352}} @misc{kock_an_advanced_2023, author={Kock, T.,Baschek, B.,Wobbe, F.,Heineke, M.,Riethmüller, R.,Deschner, S.,Seidel, G.,Calil, P.H.R.}, title={An advanced towed CTD chain for physical-biological high resolution in situ upper ocean measurements}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2023.1183061}, abstract = {Submesoscale eddies, fronts, and filaments are ubiquitous in the upper ocean and play an important role in biogeochemical and mixing processes as well as in the energy budget. To capture the high spatial variability of submesoscale processes, it is desirable to simultaneously resolve the vertical and horizontal gradients of hydrographic properties on scales of 10 m to 10 km. We present a revised towed CTD chain, for rapid quasi-synoptic in situ measurements of submesoscale oceanographic features, that is lighter, more robust and scientifically more useful than previous towed CTD chains. This new instrument provides a horizontal resolution of O(1 m) and can be towed at speeds of up to 5 ms-1 for measurements of the upper 100 m of the water column while providing a reasonable vertical resolution of O(1 m – 10 m). Individual CTD probes are equipped with temperature, conductivity, pressure and either rapid response dissolved oxygen or fluorescence sensors at multiple depths, enabling both hydrographic and biogeochemical studies at high resolution. A flexible probe hardware allows either real-time data collection or internal data logging for offline post-processing. Finally, we outline the necessary post-processing steps and provide data examples. With the presented data examples we show and conclude that the advanced towed CTD chain is a flexible and lightweight take on the towed CTD chain concept. It can easily be adapted to scientific needs and provides high quality very high resolution oceanographic data.}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2023.1183061} (DOI). Kock, T.; Baschek, B.; Wobbe, F.; Heineke, M.; Riethmüller, R.; Deschner, S.; Seidel, G.; Calil, P.: An advanced towed CTD chain for physical-biological high resolution in situ upper ocean measurements. Frontiers in Marine Science. 2023. vol. 10, 1183061. DOI: 10.3389/fmars.2023.1183061}} @misc{kaiser_effects_of_2023, author={Kaiser, D.,Voynova, Y.G.,Brix, H.}, title={Effects of the 2018 European heatwave and drought on coastal biogeochemistry in the German Bight}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.scitotenv.2023.164316}, abstract = {In 2018, Europe experienced an unprecedented heatwave and drought, especially in central and northern Europe, which caused decreased terrestrial production and affected ecosystem health. In this study, the effects of this event on the marine environment are investigate, with a focus on the biogeochemical response in the German Bight of the North Sea. Using time series data from FerryBoxes, research cruises, monitoring programs and remote sensing we compare conditions in 2018 to climatological values. We find that (1) the heatwave caused rapid warming of surface waters, (2) the drought reduced river discharge and nutrient loads to the coast, and (3) these combined effects altered coastal biogeochemistry and productivity. During 2018, both water discharge and nutrient loads from rivers discharging into the German Bight were below the seasonally variable 10th percentile from March onward. Throughout the study domain, water temperature was near or below that threshold in March 2018, but higher than in other years during May 2018, representing not only a heat wave, but also the fastest spring warming on record. This extreme warming period saw concurrent high peaks in chlorophyll a, dissolved oxygen and pH, consistent with the development of a strong spring bloom. It appears that productivity was above 75th percentile of the 21-year record in most of the nearshore region, while offshore it was widely below the 25th percentile in 2018. The drought-related low discharge limited nutrient supply from the rivers, but likely increased water residence time nearshore, where a surge in primary production with efficient nutrient utilization during the spring depleted nutrients available for transport offshore. There, the heatwave-related rapid warming of surface water resulted in the establishment of a stable thermal water column stratification, hindering vertical nutrient supply to the surface layer during the summer.}, note = {Online available at: \url{https://doi.org/10.1016/j.scitotenv.2023.164316} (DOI). Kaiser, D.; Voynova, Y.; Brix, H.: Effects of the 2018 European heatwave and drought on coastal biogeochemistry in the German Bight. Science of the Total Environment. 2023. vol. 892, 164316. DOI: 10.1016/j.scitotenv.2023.164316}} @misc{rosentreter_coastal_vegetation_2023, author={Rosentreter, J.A.,Laruelle, G.G.,Bange, H.W.,Bianchi, T.S.,Busecke, J.J.M.,Cai, W.-J.,Eyre, B.D.,Forbrich, I.,Kwon, E.Y.,Maavara, T.,Moosdorf, N.,Najjar, R.G.,Sarma, V.V.S.S.,Van Dam, B.,Regnier, P.}, title={Coastal vegetation and estuaries are collectively a greenhouse gas sink}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1038/s41558-023-01682-9}, abstract = {Coastal ecosystems release or absorb carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O), but the net effects of these ecosystems on the radiative balance remain unknown. We compiled a dataset of observations from 738 sites from studies published between 1975 and 2020 to quantify CO2, CH4 and N2O fluxes in estuaries and coastal vegetation in ten global regions. We show that the CO2-equivalent (CO2e) uptake by coastal vegetation is decreased by 23–27% due to estuarine CO2e outgassing, resulting in a global median net sink of 391 or 444 TgCO2e yr−1 using the 20- or 100-year global warming potentials, respectively. Globally, total coastal CH4 and N2O emissions decrease the coastal CO2 sink by 9–20%. Southeast Asia, North America and Africa are critical regional hotspots of GHG sinks. Understanding these hotspots can guide our efforts to strengthen coastal CO2 uptake while effectively reducing CH4 and N2O emissions.}, note = {Online available at: \url{https://doi.org/10.1038/s41558-023-01682-9} (DOI). Rosentreter, J.; Laruelle, G.; Bange, H.; Bianchi, T.; Busecke, J.; Cai, W.; Eyre, B.; Forbrich, I.; Kwon, E.; Maavara, T.; Moosdorf, N.; Najjar, R.; Sarma, V.; Van Dam, B.; Regnier, P.: Coastal vegetation and estuaries are collectively a greenhouse gas sink. Nature Climate Change. 2023. vol. 13, 579-587. DOI: 10.1038/s41558-023-01682-9}} @misc{hieronymi_ocean_color_2023, author={Hieronymi, M.,Bi, S.,Müller, D.,Schütt, E.M.,Behr, D.,Brockmann, C.,Lebreton, C.,Steinmetz, F.,Stelzer, K.,Vanhellemont, Q.}, title={Ocean color atmospheric correction methods in view of usability for different optical water types}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2023.1129876}, abstract = {Satellite remote sensing allows large-scale global observations of aquatic ecosystems and matter fluxes from the source through rivers and lakes to coasts, marginal seas into the open ocean. Fuzzy logic classification of optical water types (OWT) is increasingly used to optimally determine water properties and enable seamless transitions between water types. However, effective exploitation of this method requires a successful atmospheric correction (AC) over the entire spectral range, i.e., the upstream AC is suitable for each water type and always delivers classifiable remote-sensing reflectances. In this study, we compare five different AC methods for Sentinel-3/OLCI ocean color imagery, namely IPF, C2RCC, A4O, POLYMER, and ACOLITE-DSF (all in the 2022 current version). We evaluate their results, i.e., remote-sensing reflectance, in terms of spatial exploitability, individual flagging, spectral plausibility compared to in situ data, and OWT classifiability with four different classification schemes. Especially the results of A4O show that it is beneficial if the performance spectrum of the atmospheric correction is tailored to an OWT system and vice versa. The study gives hints on how to improve AC performance, e.g., with respect to homogeneity and flagging, but also how an OWT classification system should be designed for global deployment.}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2023.1129876} (DOI). Hieronymi, M.; Bi, S.; Müller, D.; Schütt, E.; Behr, D.; Brockmann, C.; Lebreton, C.; Steinmetz, F.; Stelzer, K.; Vanhellemont, Q.: Ocean color atmospheric correction methods in view of usability for different optical water types. Frontiers in Marine Science. 2023. vol. 10, 1129876. DOI: 10.3389/fmars.2023.1129876}} @misc{walworth_genuswide_transcriptional_2023, author={Walworth, N.G.,Espinoza, J.L.,Argyle, P.A.,Hinners, J.,Levine, N.M.,Doblin, M.A.,Dupont, C.L.,Collins, S.}, title={Genus-Wide Transcriptional Landscapes Reveal Correlated Gene Networks Underlying Microevolutionary Divergence in Diatoms}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1093/molbev/msad218}, abstract = {Marine microbes like diatoms make up the base of marine food webs and drive global nutrient cycles. Despite their key roles in ecology, biogeochemistry, and biotechnology, we have limited empirical data on how forces other than adaptation may drive diatom diversification, especially in the absence of environmental change. One key feature of diatom populations is frequent extreme reductions in population size, which can occur both in situ and ex situ as part of bloom-and-bust growth dynamics. This can drive divergence between closely related lineages, even in the absence of environmental differences. Here, we combine experimental evolution and transcriptome landscapes (t-scapes) to reveal repeated evolutionary divergence within several species of diatoms in a constant environment. We show that most of the transcriptional divergence can be captured on a reduced set of axes, and that repeatable evolution can occur along a single major axis of variation defined by core ortholog expression comprising common metabolic pathways. Previous work has associated specific transcriptional changes in gene networks with environmental factors. Here, we find that these same gene networks diverge in the absence of environmental change, suggesting these pathways may be central in generating phenotypic diversity as a result of both selective and random evolutionary forces. If this is the case, these genes and the functions they encode may represent universal axes of variation. Such axes that capture suites of interacting transcriptional changes during diversification improve our understanding of both global patterns in local adaptation and microdiversity, as well as evolutionary forces shaping algal cultivation.}, note = {Online available at: \url{https://doi.org/10.1093/molbev/msad218} (DOI). Walworth, N.; Espinoza, J.; Argyle, P.; Hinners, J.; Levine, N.; Doblin, M.; Dupont, C.; Collins, S.: Genus-Wide Transcriptional Landscapes Reveal Correlated Gene Networks Underlying Microevolutionary Divergence in Diatoms. Molecular Biology and Evolution. 2023. vol. 40, no. 10, msad218. DOI: 10.1093/molbev/msad218}} @misc{bonthond_benthic_microbial_2023, author={Bonthond, G.,Beermann, J.,Gutow, L.,Neumann, A.,Barboza, F.R.,Desiderato, A.,Fofonova, V.,Helber, S.B.,Khodami, S.,Kraan, C. and Neumann, H.,Rhode, S.,Schupp, P.J.}, title={Benthic microbial biogeographic trends in the North Sea are shaped by an interplay of environmental drivers and bottom trawling effort}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1038/s43705-023-00336-3}, abstract = {Microbial composition and diversity in marine sediments are shaped by environmental, biological, and anthropogenic processes operating at different scales. However, our understanding of benthic microbial biogeography remains limited. Here, we used 16S rDNA amplicon sequencing to characterize benthic microbiota in the North Sea from the top centimeter of 339 sediment samples. We utilized spatially explicit statistical models, to disentangle the effects of the different predictors, including bottom trawling intensity, a prevalent industrial fishing practice which heavily impacts benthic ecosystems. Fitted models demonstrate how the geographic interplay of different environmental and anthropogenic drivers shapes the diversity, structure and potential metabolism of benthic microbial communities. Sediment properties were the primary determinants, with diversity increasing with sediment permeability but also with mud content, highlighting different underlying processes. Additionally, diversity and structure varied with total organic matter content, temperature, bottom shear stress and bottom trawling. Changes in diversity associated with bottom trawling intensity were accompanied by shifts in predicted energy metabolism. Specifically, with increasing trawling intensity, we observed a transition toward more aerobic heterotrophic and less denitrifying predicted metabolism. Our findings provide first insights into benthic microbial biogeographic patterns on a large spatial scale and illustrate how anthropogenic activity such as bottom trawling may influence the distribution and abundances of microbes and potential metabolism at macroecological scales.}, note = {Online available at: \url{https://doi.org/10.1038/s43705-023-00336-3} (DOI). Bonthond, G.; Beermann, J.; Gutow, L.; Neumann, A.; Barboza, F.; Desiderato, A.; Fofonova, V.; Helber, S.; Khodami, S.; Kraan, C.; Rhode, S.; Schupp, P.: Benthic microbial biogeographic trends in the North Sea are shaped by an interplay of environmental drivers and bottom trawling effort. ISME Communications. 2023. vol. 3, 132. DOI: 10.1038/s43705-023-00336-3}} @misc{rewrie_recent_inorganic_2023, author={Rewrie, L.C.V.,Baschek, B.,van Beusekom, J.E.E.,Körtzinger, A.,Ollesch, G.,Voynova, Y.G.}, title={Recent inorganic carbon increase in a temperate estuary driven by water quality improvement and enhanced by droughts}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-20-4931-2023}, abstract = {Estuaries are an important contributor to the global carbon budget, facilitating carbon removal, transfer, and transformation between land and the coastal ocean. Estuaries are susceptible to global climate change and anthropogenic perturbations. We find that a long-term significant mid-estuary increase in dissolved inorganic carbon (DIC) of 6–21 µmol kg−1 yr−1 (1997–2020) in a temperate estuary in Germany (Elbe Estuary) was driven by an increase in upper-estuary particulate organic carbon (POC) content of 8–14 µmol kg−1 yr−1. The temporal POC increase was due to an overall improvement in water quality observed in the form of high rates of primary production and a significant drop in biological oxygen demand. The magnitude of mid-estuary DIC gain was equivalent to the increased POC production in the upper estuary, suggesting that POC is effectively remineralized and retained as DIC in the mid-estuary, with the estuary acting as an efficient natural filter for POC. In the context of this significant long-term DIC increase, a recent extended drought period (2014–2020) significantly lowered the annual mean river discharge (468 ± 234 m3 s−1) compared to the long-term mean (690 ± 441 m3 s−1, 1960–2020), while the late spring internal DIC load in the estuary doubled. The drought induced a longer dry season, starting in May (earlier than normal), increased the residence time in the estuary and allowed for a more complete remineralization period of POC. Annually, 77 %–94 % of the total DIC export was laterally transported to the coastal waters, reaching 89 ± 4.8 Gmol C yr−1, and thus, between 1997 and 2020, only an estimated maximum of 23 % (10 Gmol C yr−1) was released via carbon dioxide (CO2) evasion. Export of DIC to coastal waters decreased significantly during the drought, on average by 24 % (2014–2020: 38 ± 5.4 Gmol C yr−1), compared to the non-drought period. In contrast, there was no change in the water–air CO2 flux during the drought. We have identified that seasonal changes in DIC processing in an estuary require consideration when estimating both the long-term and future changes in water–air CO2 flux and DIC export to coastal waters. Regional and global carbon budgets should therefore take into account carbon cycling estimates in estuaries, as well as their changes over time in relation to impacts of water quality changes and extreme hydrological events.}, note = {Online available at: \url{https://doi.org/10.5194/bg-20-4931-2023} (DOI). Rewrie, L.; Baschek, B.; van Beusekom, J.; Körtzinger, A.; Ollesch, G.; Voynova, Y.: Recent inorganic carbon increase in a temperate estuary driven by water quality improvement and enhanced by droughts. Biogeosciences. 2023. vol. 20, no. 24, 4931–4947. DOI: 10.5194/bg-20-4931-2023}} @misc{dupouy_a_review_2023, author={Dupouy, C.,Whiteside, A.,Tan, J.,Wattelez, G.,Murakami, H.,Andréoli, R.,Lefèvre, J.,Röttgers, R.,Singh, A.,Frouin, R.}, title={A Review of Ocean Color Algorithms to Detect Trichodesmium Oceanic Blooms and Quantify Chlorophyll Concentration in Shallow Coral Lagoons of South Pacific Archipelagos}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.3390/rs15215194}, abstract = {The oceanic waters of the Southwest Tropical Pacific occupy a vast region including multiple Pacific Island Countries. The state of these waters is determinant for fisheries and the blue economy. Ocean color remote sensing is the main tool to survey the variability and long-term evolution of these large areas that are important for economic development but are affected by climate change. Unlike vast oligotrophic gyres, tropical waters are characterized by numerous archipelagos and islands, with deep and shallow lagoons subjected to the large impacts of the land. Strikingly large dendritic phytoplankton (Trichodesmium) blooms with high levels of chlorophyll, developing within archipelagos, as well as coastal enrichments from various origins may be observed. Algorithms to detect the presence of Trichodesmium have been developed or adapted, as well as algorithms to estimate the chlorophyll concentration ([Chl-a)]. Adapting existing [Chl-a] algorithms does not always yield high, i.e., sufficient, accuracy. A review of published regional bio-optical algorithms developed taking into account the specific phytoplankton composition and minimizing the adverse impacts of particles and the seabed bottom on [Chl-a] determination is presented, as well the bio-optical database that allowed their development. The interest of such algorithms for a variety of applications and scientific accomplishments is highlighted, with a view to further addressing the main biology and biogeochemistry questions, e.g., to determine the true impact of diazotrophs and assess lagoon [Chl-a] variability with the highest confidence. This work anticipates the use of future coarse and high-spatial-resolution and multi- and hyper-spectral satellite imagery in the Pacific.}, note = {Online available at: \url{https://doi.org/10.3390/rs15215194} (DOI). Dupouy, C.; Whiteside, A.; Tan, J.; Wattelez, G.; Murakami, H.; Andréoli, R.; Lefèvre, J.; Röttgers, R.; Singh, A.; Frouin, R.: A Review of Ocean Color Algorithms to Detect Trichodesmium Oceanic Blooms and Quantify Chlorophyll Concentration in Shallow Coral Lagoons of South Pacific Archipelagos. Remote Sensing. 2023. vol. 15, no. 21, 5194. DOI: 10.3390/rs15215194}} @misc{norbisrath_alkalinity_and_2023, author={Norbisrath, M.,Neumann, A.,Dähnke, K.,Sanders, T.,Schöl, A.,van Beusekom, J.E.E.,Thomas, H.}, title={Alkalinity and nitrate dynamics reveal dominance of anammox in a hyper-turbid estuary}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-20-4307-2023}, abstract = {Total alkalinity (TA) regulates the oceanic storage capacity of atmospheric CO2. In heterotrophic temperate estuaries, anaerobic respiration of organic matter, e.g., by denitrification, can be an important source of TA. Denitrification is the anaerobic reduction of nitrate (NO3-) to elemental nitrogen (N2). By contrast, anammox yields N2 as its terminal product via comproportionation of ammonium (NH4+) and nitrite (NO2-); however, this occurs without release of TA as a byproduct. In order to investigate these two nitrate and nitrite respiration pathways and their resulting impact on TA generation, we sampled the highly turbid estuary of the Ems River, discharging into the North Sea in June 2020. During ebb tide, a transect was sampled from the Wadden Sea to the upper tidal estuary, where we additionally sampled fluid mud for incubation experiments and five vertical profiles in the hyper-turbid tidal river. The data reveal a strong increase of TA and dissolved inorganic carbon (DIC) in the tidal river, where stable nitrate isotopes indicate water column denitrification as the dominant pathway. However, in the fluid mud of the tidal river, the measured TA and the N2 incubation experiments imply only low denitrification rates, with the majority of the N2 being produced by anammox (>90 %). The relative abundances of anammox and denitrification, respectively, thus exert a major control on the CO2 storage capacity of adjacent coastal waters.}, note = {Online available at: \url{https://doi.org/10.5194/bg-20-4307-2023} (DOI). Norbisrath, M.; Neumann, A.; Dähnke, K.; Sanders, T.; Schöl, A.; van Beusekom, J.; Thomas, H.: Alkalinity and nitrate dynamics reveal dominance of anammox in a hyper-turbid estuary. Biogeosciences. 2023. vol. 20, no. 20, 4307-4321. DOI: 10.5194/bg-20-4307-2023}} @misc{zhu_spatial_and_2023, author={Zhu, Y.,Li, Y.,Bi, S.,Lyu, H.,Cai, X.,Wang, H.,Li, J.,Xu, J.}, title={Spatial and temporal distribution analysis of dominant algae in Lake Taihu based on ocean and land color instrument data}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.ecolind.2023.110959}, abstract = {The proliferation of algal blooms can lead to environmental issues. The phytoplankton responsible for these blooms are diverse. Different species of bloom-forming algae have distinct characteristics and hazards, and therefore need different treatment methods. An accurate and quick determination of the spatial and temporal distribution characteristics of different algal species is crucial for lake ecological restoration. Based on the differences in remote sensing reflectance (Rrs) of various typical algae species in eutrophic lakes (including Microcystis aeruginosa, Aphanizomenon sp., and Pseudanabaena sp. in Cyanobacteria and Chlorella sp. and Scenedesmus quadricauda in Chlorophytes), difference index and algae distinguishing index were developed to differentiate algae species. A validation, using an independent dataset from an indoor experiment and in-situ-measured and satellite-image-derived Rrs, showed that the algorithm can provide reliable results (overall accuracies of 81.97%, 81.25%, and 60.42%, respectively). According to Ocean and Land Color Instrument images of Lake Taihu in the period of 2016 to 2020, Microcystis was the dominant algae, followed by Pseudanabaena and Aphanizomenon. The dominance of the two types of Chlorophytes was less pronounced. The proportion of Microcystis as the dominant algae was highest in summer, while the proportion of Pseudanabaena peaked in winter. The proportion of Aphanizomenon varied slightly throughout the year, while the proportion of the two Chlorophytes peaked in winter. In terms of spatial distribution, the patterns in spring and autumn were relatively similar. In summer, approximately 80% of the lake was dominated by Microcystis. In winter, Chlorella and Scenedesmus were more prevalent along the southeastern shore of Lake Taihu. The construction and application of this model can provide a technical support for prediction and prevention of blooms in inland lakes.}, note = {Online available at: \url{https://doi.org/10.1016/j.ecolind.2023.110959} (DOI). Zhu, Y.; Li, Y.; Bi, S.; Lyu, H.; Cai, X.; Wang, H.; Li, J.; Xu, J.: Spatial and temporal distribution analysis of dominant algae in Lake Taihu based on ocean and land color instrument data. Ecological Indicators. 2023. vol. 155, 110959. DOI: 10.1016/j.ecolind.2023.110959}} @misc{li_contributions_of_2023, author={Li, J.,Li, Y.,Dong, X.,Wang, H.,Cai, X.,Zhu, Y.,Lyu, H.,Zeng, S.,Bi, S.,Wang, G.}, title={Contributions of meteorology and nutrient to the surface cyanobacterial blooms at different timescales in the shallow eutrophic Lake Taihu}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.scitotenv.2023.165064}, abstract = {Quantitative assessments of the contributions of various environmental factors to cyanobacterial blooms at different timescales are lacking. Here, the hourly cyanobacterial bloom intensity (CBI) index, a proxy for the intensity of surface cyanobacterial biomass, was obtained from the geostationary satellite sensor Geostationary Ocean Color Imager (GOCI) over the years 2011–2018. Generalized additive model was applied to determine the responses of monthly and hourly CBI to the perturbations of meteorological factors, water stability and nutrients, with variation partitioning analysis used to analyze the relative importance of the three groups of variables to the inter-monthly variation of diurnal CBI in each season. The effects of environmental factors on surface cyanobacterial blooms varied at different timescales. Hourly CBI increased with increasing air temperature up to 18 °C but decreased sharply above 18 °C, whereas monthly CBI increased with increasing air temperature up to 30 °C and stabilized thereafter. Among all the environmental factors, air temperature had the largest contribution to the intra-daily variation in CBI; water stability had the highest explanation rate for the inter-monthly variation of diurnal CBI during summer (42.3 %) and autumn (56.9 %); total phosphorus explained the most variation in monthly CBI (18.5 %). Compared with cyanobacterial biomass (CB) in the water column, high light and low wind speed caused significantly lower CBI in July and higher CBI in November respectively. Interestingly, cyanobacterial blooms at the hourly scale were aggravated by climate warming during winter and spring but inhibited during summer and autumn. Collectively, this study reveals the effects of environmental factors on surface cyanobacterial blooms at different timescales and suggests the consideration of the hourly effect of air temperature in short-term predictions of cyanobacterial blooms.}, note = {Online available at: \url{https://doi.org/10.1016/j.scitotenv.2023.165064} (DOI). Li, J.; Li, Y.; Dong, X.; Wang, H.; Cai, X.; Zhu, Y.; Lyu, H.; Zeng, S.; Bi, S.; Wang, G.: Contributions of meteorology and nutrient to the surface cyanobacterial blooms at different timescales in the shallow eutrophic Lake Taihu. Science of the Total Environment. 2023. vol. 894, 165064. DOI: 10.1016/j.scitotenv.2023.165064}} @misc{strait_preliminary_results_2023, author={Strait, C.M.,Tonizzo, A.,Röttgers, R.,Slade, W.,Twardowski, M.S.}, title={Preliminary Results of New Calibration Approach and Uncertainty Assessment for PSICAM}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1117/12.2663974}, abstract = {A rigorous view of the uncertainties in Sunstone PSICAM (Point Source Integrated Cavity Absorption Meter) measurements are investigated. Multiple sources of error can greatly influence the accuracy of PSICAM absorption measurements: measurement noise, spectrometer stability, light source stability, calibration and external verification of the standard are a few of the sources of errors that were investigated. Measurement noise can be reduced through repetitive measurements. Using more than 300 averages for each measurement provided repeatability of measurements with a mean absolute difference less than 0.001 m-1 across the visible spectra. Like with other tube and cuvette style absorption meters, bubbles are a potent contaminant when determining absorption. The stability of the spectrometer with time and temperature are explored. Non-linearity and wavelength registration are also considered in reducing errors. Light source stability and output with time are also presented. Due to its small size the PSICAM is used both in the lab and at sea. Accurate absorption values require calibration to be conducted to account for the reflectivity (𝜌) of the sphere. Currently nigrosine dye is used to measure the reflectivity and requires a priori knowledge of the absorption of the dye. An examination of the stability of nigrosine dye is conducted for both filtered and non-filtered dye. A solid standard is proposed to improve the determination of reflectivity in the sphere.}, note = {Online available at: \url{https://doi.org/10.1117/12.2663974} (DOI). Strait, C.; Tonizzo, A.; Röttgers, R.; Slade, W.; Twardowski, M.: Preliminary Results of New Calibration Approach and Uncertainty Assessment for PSICAM. Proceedings of SPIE: Ocean Sensing and Monitoring XV. 2023. vol. 12543, 125430F. DOI: 10.1117/12.2663974}} @misc{schulz_low_discharge_2023, author={Schulz, G.,van Beusekom, J.E.E.,Jacob, J.,Bold, S.,Schöl, A.,Ankele, M.,Sanders, T.,Dähnke, K.}, title={Low discharge intensifies nitrogen retention in rivers – a case study in the Elbe River}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.scitotenv.2023.166740}, abstract = {Eutrophication due to excessive nutrient inputs is a major threat to coastal ecosystems worldwide, causing harmful algae blooms, seagrass loss and hypoxia. Decisions to combat eutrophication in the North Sea were made in the 1980s. Despite significant improvements during recent decades, high nitrogen loads and resulting eutrophication problems remain. In this study, long-term changes in nitrogen inputs to the Elbe Estuary (Germany) were characterized based on nitrogen data provided by the Elbe River Basin Community from 1985 to 2019. Additionally, surface water samples were taken at the weir separating the river from the estuary from 2011 to 2021 to characterize dissolved inorganic nitrogen concentrations and nitrate stable isotope composition. The findings suggest a close coupling of river discharge with the riverine nitrogen cycle. Nitrogen loads decreased disproportionately with decreasing discharge. This decrease is due to intensified nitrogen retention in the Elbe catchment, which can double nitrogen retention compared to average discharge conditions. Phytoplankton growth was enhanced by long residence times and high light availability at low water levels. This suggests that the recent decreases in nitrogen loads in the Elbe River were not only a result of management measures in the catchment but were also amplified by a recent long-lasting drought in the catchment. Based on projections from the Intergovernmental Panel on Climate Change, more frequent and extensive droughts are anticipated, which may lead to future seasonal shifts to nitrate limitation in the lower Elbe River.}, note = {Online available at: \url{https://doi.org/10.1016/j.scitotenv.2023.166740} (DOI). Schulz, G.; van Beusekom, J.; Jacob, J.; Bold, S.; Schöl, A.; Ankele, M.; Sanders, T.; Dähnke, K.: Low discharge intensifies nitrogen retention in rivers – a case study in the Elbe River. Science of the Total Environment. 2023. vol. 904, 166740. DOI: 10.1016/j.scitotenv.2023.166740}} @misc{baumann_drivers_of_2023, author={Baumann, M.,Paul, A.J.,Taucher, J.,Bach, L.T.,Goldenberg, S.,Stange, P.,Minutolo, F.,Riebesell, U.}, title={Drivers of Particle Sinking Velocities in the Peruvian Upwelling System}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-20-2595-2023}, abstract = {As one of Earth's most productive marine ecosystems, the Peruvian upwelling system transports large amounts of biogenic matter from the surface to the deep ocean. Whilst particle sinking velocity is a key factor controlling the biological pump, thereby affecting carbon sequestration and O2-depletion, it has not yet been measured in this system. During a 50 d mesocosm experiment in the surface waters off the coast of Peru, we assessed particle sinking velocities and their biogeochemical and physical drivers. We further characterized the general properties of exported particles under different phytoplankton communities and nutritional states. Average sinking velocities varied between size classes and ranged from 12.8 ± 0.7 m d−1 (particles 40–100 µm) to 19.4 ± 0.7 m d−1 (particles 100–250 µm) and 34.2 ± 1.5 m d−1 (particles 250–1000 µm) (± 95 % CI). Despite a distinct plankton succession from diatoms to dinoflagellates with concomitant 5-fold drop in opal ballasting, substantial changes in sinking velocity were not observed. This illustrates the complexity of counteracting factors driving the settling behaviour of marine particles. In contrast, we found higher sinking velocities with increasing particle size and roundness and decreasing porosity. Size had by far the strongest influence among these physical particle properties, despite a high amount of unexplained variability. Our study provides a detailed analysis of the drivers of particle sinking velocity in the Peruvian upwelling system, which allows modellers to optimize local particle flux parameterization. This will help to better project oxygen concentrations and carbon sequestration in a region that is subject to substantial climate-driven changes.}, note = {Online available at: \url{https://doi.org/10.5194/bg-20-2595-2023} (DOI). Baumann, M.; Paul, A.; Taucher, J.; Bach, L.; Goldenberg, S.; Stange, P.; Minutolo, F.; Riebesell, U.: Drivers of Particle Sinking Velocities in the Peruvian Upwelling System. Biogeosciences. 2023. vol. 20, no. 13, 2595-2612. DOI: 10.5194/bg-20-2595-2023}} @misc{lehmann_alkalinity_generation_2023, author={Lehmann, N.,Lantuit, H.,Böttcher, M.E.,Hartmann, J.,Eulenburg, A.,Thomas, H.}, title={Alkalinity generation from carbonate weathering in a silicate-dominated headwater catchment at Iskorasfjellet, northern Norway}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-20-3459-2023}, abstract = {The weathering rate of carbonate minerals is several orders of magnitude higher than for silicate minerals. Therefore, small amounts of carbonate minerals have the potential to control the dissolved weathering loads in silicate-dominated catchments. Both weathering processes produce alkalinity under the consumption of CO2. Given that only alkalinity generation from silicate weathering is thought to be a long-term sink for CO2, a misattributed weathering source could lead to incorrect conclusions about long- and short-term CO2 fixation. In this study, we aimed to identify the weathering sources responsible for alkalinity generation and CO2 fixation across watershed scales in a degrading permafrost landscape in northern Norway, 68.7–70.5∘ N, and on a temporal scale, in a subarctic headwater catchment on the mountainside of Iskorasfjellet, characterized by sporadic permafrost and underlain mainly by silicates as the alkalinity-bearing lithology. By analyzing total alkalinity (AT) and dissolved inorganic carbon (DIC) concentrations, as well as the stable isotope signature of the latter (δ13C-DIC), in conjunction with dissolved cation and anion loads, we found that AT was almost entirely derived from weathering of the sparse carbonate minerals. We propose that in the headwater catchment the riparian zone is a hotspot area of AT generation and release due to its enhanced hydrological connectivity and that the weathering load contribution from the uphill catchment is limited by insufficient contact time of weathering agents and weatherable materials. By using stable water isotopes, it was possible to explain temporal variations in AT concentrations following a precipitation event due to surface runoff. In addition to carbonic acid, sulfuric acid, probably originating from oxidation of pyrite or reduced sulfur in wetlands or from acid deposition, is shown to be a potential corrosive reactant. An increased proportion of sulfuric acid as a potential weathering agent may have resulted in a decrease in AT. Therefore, carbonate weathering in the studied area should be considered not only as a short-term CO2 sink but also as a potential CO2 source. Finally, we found that AT increased with decreasing permafrost probability, and attributed this relation to an increased water storage capacity associated with increasing contact of weathering agent and rock surfaces and enhanced microbial activity. As both soil respiration and permafrost thaw are expected to increase with climate change, increasing the availability of weathering agents in the form of CO2 and water storage capacity, respectively, we suggest that future weathering rates and alkalinity generation will increase concomitantly in the study area.}, note = {Online available at: \url{https://doi.org/10.5194/bg-20-3459-2023} (DOI). Lehmann, N.; Lantuit, H.; Böttcher, M.; Hartmann, J.; Eulenburg, A.; Thomas, H.: Alkalinity generation from carbonate weathering in a silicate-dominated headwater catchment at Iskorasfjellet, northern Norway. Biogeosciences. 2023. vol. 20, no. 16, 3459-3479. DOI: 10.5194/bg-20-3459-2023}} @misc{schanz_robust_detection_2023, author={Schanz, T.,Möller, K.O.,Rühl, S.,Greenberg, D.S.}, title={Robust detection of marine life with label-free image feature learning and probability calibration}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1088/2632-2153/ace417}, abstract = {Advances in in situ marine life imaging have significantly increased the size and quality of available datasets, but automatic image analysis has not kept pace. Machine learning has shown promise for image processing, but its effectiveness is limited by several open challenges: the requirement for large expert-labeled training datasets, disagreement among experts, under-representation of various species and unreliable or overconfident predictions. To overcome these obstacles for automated underwater imaging, we combine and test recent developments in deep classifier networks and self-supervised feature learning. We use unlabeled images for pretraining deep neural networks to extract task-relevant image features, allowing learning algorithms to cope with scarcity in expert labels, and carefully evaluate performance in subsequent label-based tasks. Performance on rare classes is improved by applying data rebalancing together with a Bayesian correction to avoid biasing inferred in situ class frequencies. A divergence-based loss allows training on multiple, conflicting labels for the same image, leading to better estimates of uncertainty which we quantify with a novel accuracy measure. Together, these techniques can reduce the required label counts ∼100-fold while maintaining the accuracy of standard supervised training, shorten training time, cope with expert disagreement and reduce overconfidence.}, note = {Online available at: \url{https://doi.org/10.1088/2632-2153/ace417} (DOI). Schanz, T.; Möller, K.; Rühl, S.; Greenberg, D.: Robust detection of marine life with label-free image feature learning and probability calibration. Machine Learning: Science and Technology. 2023. vol. 4, no. 3, 035007. DOI: 10.1088/2632-2153/ace417}} @misc{sandven_seasonality_and_2023, author={Sandven, H.,Hamre, B.,Petit, T.,Röttgers, R.,Liu, H.,Granskog, M.A.}, title={Seasonality and drivers of water column optical properties on the northwestern Barents Sea shelf}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.pocean.2023.103076}, abstract = {Hydrographic and bio-optical measurements were conducted along a south–north transect on the northwestern Barents Sea shelf from early spring to late summer in 2021. Strong climate change manifestations observed in this region are rapidly changing the marine environment. These rare observations cover the seasonal evolution from well-mixed and sea ice-covered winter conditions, through sea ice retreat in spring, to late summer where the sea ice had largely retreated and the water column was stratified due to sea ice melt.,Phytoplankton drives the spatial and temporal variability in optical properties in most of the water column, but increased scattering and absorption could also be seen in the bottom boundary layer due to resuspended particles. The relationship between chlorophyll-a and particulate absorption deviates from the globally observed relationship, likely due to light adaptations in the ice-covered water masses. We recommend developing specific models for spring phytoplankton growth in ice-covered waters to accurately account for self-shading effects. The absorption of colored dissolved organic matter (CDOM) was relatively low, due to waters of Atlantic origin in the studied region, and varied considerably less than particulate absorption. CDOM was nevertheless the optically dominant ocean constituent in the very clear waters in late winter.,Regional relationships for estimating particulate organic carbon (POC) and chlorophyll-a concentrations from in situ attenuation and fluorescence measurements were developed. POC may act as an alternative indicator to chlorophyll-a for optical properties in ice-covered open ocean, which is relevant for light availability parametrizations in biogeochemical ocean models.}, note = {Online available at: \url{https://doi.org/10.1016/j.pocean.2023.103076} (DOI). Sandven, H.; Hamre, B.; Petit, T.; Röttgers, R.; Liu, H.; Granskog, M.: Seasonality and drivers of water column optical properties on the northwestern Barents Sea shelf. Progress in Oceanography. 2023. vol. 217, 103076. DOI: 10.1016/j.pocean.2023.103076}} @misc{schulz_seasonal_variability_2023, author={Schulz, G.,Sanders, T.,Voynova, Y.G.,Bange, H.W.,Dähnke, K.}, title={Seasonal variability of nitrous oxide concentrations and emissions in a temperate estuary}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-20-3229-2023}, abstract = {Nitrous oxide (N2O) is a greenhouse gas, with a global warming potential 298 times that of carbon dioxide. Estuaries can be sources of N2O, but their emission estimates have significant uncertainties due to limited data availability and high spatiotemporal variability. We investigated the spatial and seasonal variability of dissolved N2O and its emissions along the Elbe Estuary (Germany), a well-mixed temperate estuary with high nutrient loading from agriculture. During nine research cruises performed between 2017 and 2022, we measured dissolved N2O concentrations, as well as dissolved nutrient and oxygen concentrations along the estuary, and calculated N2O saturations, flux densities, and emissions. We found that the estuary was a year-round source of N2O, with the highest emissions in winter when dissolved inorganic nitrogen (DIN) loads and wind speeds are high. However, in spring and summer, N2O saturations and emissions did not decrease alongside lower riverine nitrogen loads, suggesting that estuarine in situ N2O production is an important source of N2O. We identified two hotspot areas of N2O production: the Port of Hamburg, a major port region, and the mesohaline estuary near the maximum turbidity zone (MTZ). N2O production was fueled by the decomposition of riverine organic matter in the Hamburg Port and by marine organic matter in the MTZ. A comparison with previous measurements in the Elbe Estuary revealed that N2O saturation did not decrease alongside the decrease in DIN concentrations after a significant improvement of water quality in the 1990s that allowed for phytoplankton growth to re-establish in the river and estuary. The overarching control of phytoplankton growth on organic matter and, subsequently, on N2O production highlights the fact that eutrophication and elevated agricultural nutrient input can increase N2O emissions in estuaries.}, note = {Online available at: \url{https://doi.org/10.5194/bg-20-3229-2023} (DOI). Schulz, G.; Sanders, T.; Voynova, Y.; Bange, H.; Dähnke, K.: Seasonal variability of nitrous oxide concentrations and emissions in a temperate estuary. Biogeosciences. 2023. vol. 20, no. 15, 3229–3247. DOI: 10.5194/bg-20-3229-2023}} @misc{carlson_compact_and_2023, author={Carlson, D.F.,Akbulut, S.,Rasmussen, J.F.,Hestbech, C.S.,Andersen, M.H.,Melvad, C.}, title={Compact and modular autonomous surface vehicle for water research: The Naval Operating Research Drone Assessing Climate Change (NORDACC)}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.ohx.2023.e00453}, abstract = {Research, monitoring, and management of marine and aquatic ecosystems often require surface water samples to measure biogeochemical and optical parameters. Traditional sampling with a boat and several personnel onboard can be labor-intensive and safety requirements limit sampling activities in high-risk environments. This paper describes the Naval Operating Research Drone Assessing Climate Change (NORDACC). NORDACC is an open source, light-weight, and portable autonomous surface vehicle that can acquire surface water samples while also measuring sea surface temperature and salinity for the duration of its deployment. NORDACC is ideal for operations in remote areas where resources and personnel are limited. Two sample bottles, each one liter in volume, can be filled, either at pre-programmed sampling stations or manually, using the remote control. A trimaran design provides buoyancy and stability, with hulls constructed of vacuum-formed acrylonitrile butadiene styrene (ABS) plastic. NORDACC can navigate autonomously between waypoints and features first person view capabilities for enhanced situational awareness. NORDACC’s performance was validated in Aarhus Bay, Denmark, collecting multiple surface water samples in winds in excess of 8 ms−1 and steep, choppy waves.}, note = {Online available at: \url{https://doi.org/10.1016/j.ohx.2023.e00453} (DOI). Carlson, D.; Akbulut, S.; Rasmussen, J.; Hestbech, C.; Andersen, M.; Melvad, C.: Compact and modular autonomous surface vehicle for water research: The Naval Operating Research Drone Assessing Climate Change (NORDACC). HardwareX. 2023. vol. 15, e00453. DOI: 10.1016/j.ohx.2023.e00453}} @misc{fernandes_temperature_stratification_2023, author={Fernandes, A.M.,Passos, E.N.,Calil, P.H.R.,Moser, G.A.O.,de Oliveira, E.N.,Espindola, R.P.}, title={Temperature stratification in the Guanabara Bay and its relationship with wind-induced coastal upwelling off Cabo Frio; Brazil}, year={2023}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.ecss.2023.108433}, abstract = {This study investigates the mechanisms that control the occurrence of cold water intrusion events observed in Guanabara Bay, Rio de Janeiro, Brazil. To achieve this, we used multiple time-series data comprising in-situ temperatures recorded at depths of 5 m and 20 m in three sites in the Guanabara Bay region, wind velocities from three meteorological stations along the Brazilian coast, and sea level data from a tidal gauge located in the interior of Guanabara Bay. We found that from October 2014 to May 2016, near-bed temperatures in Guanabara Bay were dominated by subinertial variability. We identified subinertial cold water events, defined by temperature values below 18 °C, that were associated with South Atlantic Central Water intrusions. We obtained a total of 21 cold water events during the 18-month (545-day) sampling period, corresponding to 92.5 days or 17% of the time. Additionally, we found statistically significant lag-adjusted correlation coefficients (0.37-0.95) between near-bed (20 m) temperatures in Guanabara Bay and alongshore winds from the Arraial do Cabo meteorological station, which act in the well-known Cabo Frio upwelling system along the coast. These upwelling-favorable winds led near-bed temperature values in Guanabara Bay by 12 to 56 h and provided the remote forcing mechanism for the cold water intrusions in Guanabara Bay. Locally, the shelf-bay intrusion velocity values ranged from 0.04 to 0.50 ms−1, consistent with a gravity current enhanced by baroclinic pressure gradient, the local forcing mechanism. The cold water intrusions caused an increase in the vertical temperature stratification within Guanabara Bay, as verified for all analyzed events. We also identified subinertial oscillations due to Coastal Trapped Waves (CTWs) propagation from our sea level data records and evaluated their impacts on cold water events.}, note = {Online available at: \url{https://doi.org/10.1016/j.ecss.2023.108433} (DOI). Fernandes, A.; Passos, E.; Calil, P.; Moser, G.; de Oliveira, E.; Espindola, R.: Temperature stratification in the Guanabara Bay and its relationship with wind-induced coastal upwelling off Cabo Frio; Brazil. Estuarine, Coastal and Shelf Science. 2023. vol. 291, 108433. DOI: 10.1016/j.ecss.2023.108433}} @misc{lazaneo_submesoscale_coherent_2022, author={Lazaneo, C.,Calil, P.,Tandon, A.,da Silveira, I.}, title={Submesoscale Coherent Vortices in the South Atlantic Ocean: A Pathway for Energy Dissipation}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1029/2020JC017099}, abstract = {Mesoscale eddies propagate westward across the South Atlantic basin. As they reach the westernmost part of the basin, at approximately 20°S, they interact with a quasi-zonal seamount chain, the Vitória-Trindade Ridge (VTR). The interactions with the local topography lead to submesoscales instabilities, which ignite the formation of submesoscale coherent vortices (SCVs) such as those described in the present study for the first time in the VTR region. Here, using high-resolution hydrographic and microstructure measurements, we describe the dynamics of two adjacent SCVs wandering through the ridge. We find that the anticyclonic SCVs are characterized by a low potential vorticity and angular momentum signature, and are therefore prone to both centrifugal and symmetric instabilities. This dynamic regime suggests small-scale turbulence is actively cascading energy down to dissipation, diagnosed from turbulent kinetic energy dissipation estimates within one of the SCVs through microstructure measurements. The energy dissipation levels observed within the SCV are two orders of magnitude larger than in surrounding waters. The thermohaline signatures of each SCV reveal homogenized waters in their cores but with small thermohaline anomalies when compared to surrounding waters, suggesting a remote generation site. Here, we argue that such vortices are essential agents for energy dissipation in the ocean. We speculate that the observed SCVs were formed due to mesoscale eddy-topography interaction along the VTR and advected by the meandering South Equatorial Current to the location of field observations.}, note = {Online available at: \url{https://doi.org/10.1029/2020JC017099} (DOI). Lazaneo, C.; Calil, P.; Tandon, A.; da Silveira, I.: Submesoscale Coherent Vortices in the South Atlantic Ocean: A Pathway for Energy Dissipation. Journal of Geophysical Research : Oceans. 2022. vol. 127, no. 2, e2020JC017099. DOI: 10.1029/2020JC017099}} @misc{schulz_suspended_particulate_2022, author={Schulz, G.,Sanders, T.,van Beusekom, J. E. E.,Voynova, Y. G.,Schöl, A.,Dähnke, K}, title={Suspended particulate matter drives the spatial segregation of nitrogen turnover along the hyper-turbid Ems estuary}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-19-2007-2022}, abstract = {Estuaries are nutrient filters and change riverine nutrient loads before they reach coastal oceans. Their morphology have been extensively changed by anthropogenic activities like draining, deepening and dredging to meet economic and social demand, causing significant regime changes like tidal amplifications and in some cases to hyper-turbid conditions. Furthermore, increased nutrient loads, especially nitrogen, mainly by agriculture cause coastal eutrophication. Estuaries can either act as a sink or as a source of nitrate, depending on environmental and geomorphological conditions. These factors vary along an estuary, and change nitrogen turnover in the system. Here, we investigate the factors controlling nitrogen turnover in the hyper-turbid Ems estuary (Northern Germany), which has been strongly impacted by human activities. During two research cruises in August 2014 and June 2020, we measured water column properties, dissolved inorganic nitrogen, dual stable isotopes of nitrate and dissolved nitrous oxide concentration along the estuary. We found that three distinct biogeochemical zones exist along the estuary. A strong fractionation (∼26 ‰) of nitrate stable isotopes points towards nitrate removal via water column denitrification in the hyper-turbid tidal river, driven by anoxic conditions in deeper water layers. In the middle reaches of the estuary nitrification gains importance, turning this section into a net nitrate source. The outer reaches are dominated by mixing, with nitrate uptake in 2020.}, note = {Online available at: \url{https://doi.org/10.5194/bg-19-2007-2022} (DOI). Schulz, G.; Sanders, T.; van Beusekom, J.; Voynova, Y.; Schöl, A.; Dähnke, K.: Suspended particulate matter drives the spatial segregation of nitrogen turnover along the hyper-turbid Ems estuary. Biogeosciences. 2022. vol. 19, no. 7, 2007-2024. DOI: 10.5194/bg-19-2007-2022}} @misc{haugk_organic_matter_2022, author={Haugk, C.,Jongejans, L. L.,Mangelsdorf, K.,Fuchs, M.,Ogneva, O.,Palmtag, J.,Mollenhauer, G.,Mann, P. J.,Overduin, P. P.,Grosse, G.,Sanders, T.,Tuerena, R. E.,Schirrmeister, L.,Wetterich, S.,Kizyakov, A.,Karger, C.,Strauss, J.}, title={Organic matter characteristics of a rapidly eroding permafrost cliff in NE Siberia (Lena Delta, Laptev Sea region)}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-19-2079-2022}, abstract = {Organic carbon (OC) stored in Arctic permafrost represents one of Earth's largest and most vulnerable terrestrial carbon pools. Amplified climate warming across the Arctic results in widespread permafrost thaw. Permafrost deposits exposed at river cliffs and coasts are particularly susceptible to thawing processes. Accelerating erosion of terrestrial permafrost along shorelines leads to increased transfer of organic matter (OM) to nearshore waters. However, the amount of terrestrial permafrost carbon and nitrogen as well as the OM quality in these deposits is still poorly quantified. We define the OM quality as the intrinsic potential for further transformation, decomposition and mineralisation. Here, we characterise the sources and the quality of OM supplied to the Lena River at a rapidly eroding permafrost river shoreline cliff in the eastern part of the delta (Sobo-Sise Island). Our multi-proxy approach captures bulk elemental, molecular geochemical and carbon isotopic analyses of Late Pleistocene Yedoma permafrost and Holocene cover deposits, discontinuously spanning the last ∼52 kyr. We showed that the ancient permafrost exposed in the Sobo-Sise cliff has a high organic carbon content (mean of about 5 wt %). The oldest sediments stem from Marine Isotope Stage (MIS) 3 interstadial deposits (dated to 52 to 28 cal ka BP) and are overlaid by last glacial MIS 2 (dated to 28 to 15 cal ka BP) and Holocene MIS 1 (dated to 7–0 cal ka BP) deposits. The relatively high average chain length (ACL) index of n-alkanes along the cliff profile indicates a predominant contribution of vascular plants to the OM composition. The elevated ratio of iso- and anteiso-branched fatty acids (FAs) relative to mid- and long-chain (C ≥ 20) n-FAs in the interstadial MIS 3 and the interglacial MIS 1 deposits suggests stronger microbial activity and consequently higher input of bacterial biomass during these climatically warmer periods. The overall high carbon preference index (CPI) and higher plant fatty acid (HPFA) values as well as high ratios point to a good quality of the preserved OM and thus to a high potential of the OM for decomposition upon thaw. A decrease in HPFA values downwards along the profile probably indicates stronger OM decomposition in the oldest (MIS 3) deposits of the cliff. The characterisation of OM from eroding permafrost leads to a better assessment of the greenhouse gas potential of the OC released into river and nearshore waters in the future.}, note = {Online available at: \url{https://doi.org/10.5194/bg-19-2079-2022} (DOI). Haugk, C.; Jongejans, L.; Mangelsdorf, K.; Fuchs, M.; Ogneva, O.; Palmtag, J.; Mollenhauer, G.; Mann, P.; Overduin, P.; Grosse, G.; Sanders, T.; Tuerena, R.; Schirrmeister, L.; Wetterich, S.; Kizyakov, A.; Karger, C.; Strauss, J.: Organic matter characteristics of a rapidly eroding permafrost cliff in NE Siberia (Lena Delta, Laptev Sea region). Biogeosciences. 2022. vol. 19, no. 7, 2079-2094. DOI: 10.5194/bg-19-2079-2022}} @misc{petit_inherent_optical_2022, author={Petit, T.,Hamre, B.,Sandven, H.,Röttgers, R.,Kowalczuk, P.,Zablocka, M.,Granskog, M.}, title={Inherent optical properties of dissolved and particulate matter in an Arctic fjord (Storfjorden, Svalbard) in early summer}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.5194/os-18-455-2022}, abstract = {There have been considerable efforts to understand the hydrography of Storfjorden (Svalbard). A recurring winter polynya with large sea ice production makes it an important region of dense water formation at the scale of the Arctic Ocean. In addition, this fjord is seasonally influenced by freshwater inputs from sea ice melt and the surrounding islands of the Svalbard archipelago, which impacts the hydrography. However, the understanding of factors controlling the optical properties of the waters in Storfjorden are lacking and are crucial for the development of more accurate regional bio-optical models. Here, we present results from the first detailed optical field survey of Storfjorden conducted in early summer of 2020. Our observations are based on spectrometric analysis of water samples and in situ vertical profiles with an absorption and attenuation meter, a fluorometer, and a conductivity, temperature, and depth (CTD) sensor. In addition to the expected seasonal contribution from phytoplankton, we find that in early summer waters in Storfjorden are optically complex with a significant contribution from coloured dissolved organic matter (CDOM, 33 %–64 % of the non-water absorption at 443 nm) despite relatively low CDOM concentrations and in the nearshore or near the seabed from non-algal particles (up to 61 % of the non-water absorption at 550 nm). In surface waters, the spatial variability of light attenuation was mainly controlled by inorganic suspended matter originating from river runoff. A distinct subsurface maximum of light attenuation was largely driven by a subsurface phytoplankton bloom, controlled by stratification resulting from sea ice melt. Lastly, the cold dense bottom waters of Storfjorden from winter sea ice production periodically overflows the sill at the mouth of the fjord and can thus reach the Fram Strait. It contained elevated levels of both non-algal particles and dissolved organic matter, which are likely caused by the dense flows of the nepheloid layer interacting with the sea bed.}, note = {Online available at: \url{https://doi.org/10.5194/os-18-455-2022} (DOI). Petit, T.; Hamre, B.; Sandven, H.; Röttgers, R.; Kowalczuk, P.; Zablocka, M.; Granskog, M.: Inherent optical properties of dissolved and particulate matter in an Arctic fjord (Storfjorden, Svalbard) in early summer. Ocean Science. 2022. vol. 18, no. 2, 455-468. DOI: 10.5194/os-18-455-2022}} @misc{whitmore_strong_margin_2022, author={Whitmore, L. M.,Shiller, A. M.,Horner, T. J.,Xiang, Y.,Auro, M.,Bauch, D.,Dehairs, F.,Lam, P.,Li, J.,Maldonado, M.,Mears, C.,Newton, R.,Pasqualini, A.,Planquette, H.,Rember, R.,Thomas, H.}, title={Strong Margin Influence on the Arctic Ocean Barium Cycle Revealed by Pan-Arctic Synthesis}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1029/2021JC017417}, abstract = {Early studies revealed relationships between barium (Ba), particulate organic carbon and silicate, suggesting applications for Ba as a paleoproductivity tracer and as a tracer of modern ocean circulation. But, what controls the distribution of barium (Ba) in the oceans? Here, we investigated the Arctic Ocean Ba cycle through a one-of-a-kind data set containing dissolved (dBa), particulate (pBa), and stable isotope Ba ratio (δ138Ba) data from four Arctic GEOTRACES expeditions conducted in 2015. We hypothesized that margins would be a substantial source of Ba to the Arctic Ocean water column. The dBa, pBa, and δ138Ba distributions all suggest significant modification of inflowing Pacific seawater over the shelves, and the dBa mass balance implies that ∼50% of the dBa inventory (upper 500 m of the Arctic water column) was supplied by nonconservative inputs. Calculated areal dBa fluxes are up to 10 μmol m−2 day−1 on the margin, which is comparable to fluxes described in other regions. Applying this approach to dBa data from the 1994 Arctic Ocean Survey yields similar results. The Canadian Arctic Archipelago did not appear to have a similar margin source; rather, the dBa distribution in this section is consistent with mixing of Arctic Ocean-derived waters and Baffin Bay-derived waters. Although we lack enough information to identify the specifics of the shelf sediment Ba source, we suspect that a sedimentary remineralization and terrigenous sources (e.g., submarine groundwater discharge or fluvial particles) are contributors.}, note = {Online available at: \url{https://doi.org/10.1029/2021JC017417} (DOI). Whitmore, L.; Shiller, A.; Horner, T.; Xiang, Y.; Auro, M.; Bauch, D.; Dehairs, F.; Lam, P.; Li, J.; Maldonado, M.; Mears, C.; Newton, R.; Pasqualini, A.; Planquette, H.; Rember, R.; Thomas, H.: Strong Margin Influence on the Arctic Ocean Barium Cycle Revealed by Pan-Arctic Synthesis. Journal of Geophysical Research : Oceans. 2022. vol. 127, no. 4, e2021JC017417. DOI: 10.1029/2021JC017417}} @misc{he_metagenomic_evidence_2022, author={He, C.,Liu, J.,Wang, R.,Li, Y.,Zheng, Q.,Jiao, F.,Shi, Q.,Xu, Y.,Zhang, R.,Thomas, H.,Batt, J.,Hill, P.,Lewis, M.,Maclntyre, H.,Lu, L.,Zhang, Q.,Tu, Q.,Shi, T.,Chen, F.,Jiao, N.}, title={Metagenomic evidence for the microbial transformation of carboxyl-rich alicyclic molecules: A long-term macrocosm experiment}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.watres.2022.118281}, abstract = {Carboxyl-rich alicyclic molecules (CRAMs) widely exist in the ocean and constitute the central part of the refractory dissolved organic matter (RDOM) pool. Although a consensus has been reached that microbial activity forms CRAMs, the detailed molecular mechanisms remain largely unexplored. To better understand the underlying genetic mechanisms driving the microbial transformation of CRAM, a long-term macrocosm experiment spanning 220 days was conducted in the Aquatron Tower Tank at Dalhousie University, Halifax, Canada, with the supply of diatom-derived DOM as a carbon source. The DOM composition, community structure, and metabolic pathways were characterised using multi-omics approaches. The addition of diatom lysate introduced a mass of labile DOM into the incubation seawater, which led to a low degradation index (IDEG) and refractory molecular lability boundary (RMLB) on days 1 and 18. The molecular compositions of the DOM molecules in the later incubation period (from day 120 to day 220) were more similar in composition to those on day 0, suggesting a rapid turnover of phytoplankton debris by microbial communities. Taxonomically, while Alpha proteobacteria dominated during the entire incubation period, Gamma proteobacteria became more sensitive and abundant than the other bacterial groups on days 1 and 18. Recalcitrant measurements such as IDEG and RMLB were closely related to the DOM molecules, bacterial community, and Kyoto encyclopaedia of Genes and Genomes (KEGG) modules, suggesting close associations between RDOM accumulation and microbial metabolism. KEGG modules that showed strong positive correlation with CRAMs were identified using a microbial ecological network approach. The identified KEGG modules produced the substrates, such as the acetyl-CoA or 3‑hydroxy-3-methylglutaryl-CoA, which could participate in the mevalonate pathway to generate the precursor of CRAM analogues, isopentenyl-PP, suggesting a potential generation pathway of CRAM analogues in bacteria and archaea. This study revealed the potential genetic and molecular processes involved in the microbial origin of CRAM analogues, and thus indicated a vital ecological role of bacteria and archaea in RDOM production. This study also offered new perspectives on the carbon sequestration in the ocean.}, note = {Online available at: \url{https://doi.org/10.1016/j.watres.2022.118281} (DOI). He, C.; Liu, J.; Wang, R.; Li, Y.; Zheng, Q.; Jiao, F.; Shi, Q.; Xu, Y.; Zhang, R.; Thomas, H.; Batt, J.; Hill, P.; Lewis, M.; Maclntyre, H.; Lu, L.; Zhang, Q.; Tu, Q.; Shi, T.; Chen, F.; Jiao, N.: Metagenomic evidence for the microbial transformation of carboxyl-rich alicyclic molecules: A long-term macrocosm experiment. Water Research. 2022. vol. 216, 118281. DOI: 10.1016/j.watres.2022.118281}} @misc{carroll_attribution_of_2022, author={Carroll, D.,Menemenlis, D.,Dutkiewicz, S.,Lauderdale, J.,Adkins, J.,Bowman, K.,Brix, H.,Fenty, I.,Gierach, M.,Hill, C.,Jahn, O.,Landschützer, P.,Manizza, M.,Mazloff, M.,Miller, C.,Schimel, D.,Verdy, A.,Whitt, D.,Zhang, H.}, title={Attribution of Space-Time Variability in Global-Ocean Dissolved Inorganic Carbon}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1029/2021GB007162}, abstract = {The inventory and variability of oceanic dissolved inorganic carbon (DIC) is driven by the interplay of physical, chemical, and biological processes. Quantifying the spatiotemporal variability of these drivers is crucial for a mechanistic understanding of the ocean carbon sink and its future trajectory. Here, we use the Estimating the Circulation and Climate of the Ocean-Darwin ocean biogeochemistry state estimate to generate a global-ocean, data-constrained DIC budget and investigate how spatial and seasonal-to-interannual variability in three-dimensional circulation, air-sea CO2 flux, and biological processes have modulated the ocean sink for 1995–2018. Our results demonstrate substantial compensation between budget terms, resulting in distinct upper-ocean carbon regimes. For example, boundary current regions have strong contributions from vertical diffusion while equatorial regions exhibit compensation between upwelling and biological processes. When integrated across the full ocean depth, the 24-year DIC mass increase of 64 Pg C (2.7 Pg C year−1) primarily tracks the anthropogenic CO2 growth rate, with biological processes providing a small contribution of 2% (1.4 Pg C). In the upper 100 m, which stores roughly 13% (8.1 Pg C) of the global increase, we find that circulation provides the largest DIC gain (6.3 Pg C year−1) and biological processes are the largest loss (8.6 Pg C year−1). Interannual variability is dominated by vertical advection in equatorial regions, with the 1997–1998 El Niño-Southern Oscillation causing the largest year-to-year change in upper-ocean DIC (2.1 Pg C). Our results provide a novel, data-constrained framework for an improved mechanistic understanding of natural and anthropogenic perturbations to the ocean sink.}, note = {Online available at: \url{https://doi.org/10.1029/2021GB007162} (DOI). Carroll, D.; Menemenlis, D.; Dutkiewicz, S.; Lauderdale, J.; Adkins, J.; Bowman, K.; Brix, H.; Fenty, I.; Gierach, M.; Hill, C.; Jahn, O.; Landschützer, P.; Manizza, M.; Mazloff, M.; Miller, C.; Schimel, D.; Verdy, A.; Whitt, D.; Zhang, H.: Attribution of Space-Time Variability in Global-Ocean Dissolved Inorganic Carbon. Global Biogeochemical Cycles. 2022. vol. 36, no. 3, e2021GB007162. DOI: 10.1029/2021GB007162}} @misc{maasri_a_global_2022, author={Maasri, A.,Jähnig, S.C.,Adamescu, M.C.,Adrian, R.,Baigun, C.,Baird, D.J.,Batista-Morales, A.,Bonada, N.,Brown, L.E.,Cai, Q.,Campos-Silva, J.V.,Clausnitzer, V.,Contreras-MacBeath, T.,Cooke, S.J.,Datry, T.,Delacámara, G.,De Meester, L.,Dijkstra, K.-D.B.,Do, V.T.,Domisch, S.,Dudgeon, D.,Erös, T.,Freitag, H.,Freyhof, J.,Friedrich, J.,Friedrichs-Manthey, M.,Geist, J.,Gessner, M.O.,Goethals, P.,Gollock, M.,Gordon, C.,Grossart, H.-P.,Gulemvuga, G.,Gutiérrez-Fonseca, P.E.,Haase, P.,Hering, D.,Hahn, H.J.,Hawkins, C.P.,He, F.,Heino, J.,Hermoso, V.,Hogan, Z.,Hölker, F.,Jeschke, J.M.,Jiang, M.,Johnson, R.K.,Kalinkat, G.,Karimov, B.K.,Kasangaki, A.,Kimirei, I.A.,Kohlmann, B.,Kuemmerlen, M.,Kuiper, J.J.,Kupilas, B.,Langhans, S.D.,Lansdown, R.,Leese, F.,Magbanua, F.S.,Matsuzaki, S.-I.S.,Monaghan, M.T.,Mumladze, L.,Muzon, J.,Mvogo Ndongo, P.A.,Nejstgaard, J.C.,Nikitina, O.,Ochs, C.,Odume, O.,Opperman, J.J.,Patricio, H.,Pauls, S.,Raghavan, R.,Ramírez, A.,Rashni, B.,Ross-Gillespie, V.,Samways, M.J.,Schäfer, R.B.,Schmidt-Kloiber, A.,Seehausen, O.,Shah, D.N.,Sharma, S.,Soininen, J.,Sommerwerk, N.,Stockwell, J.D.,Suhling, F.,Tachamo Shah, R.D.,Tharme, R.E.,Thorp, J.H.,Tickner, D.,Tockner, K.,Tonkin, J.D.,Valle, M.,Vitule, J.,Volk, M.,Wang, D.,Wolter, C.,Worischka, S.}, title={A global agenda for advancing freshwater biodiversity research}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1111/ele.13931}, abstract = {Global freshwater biodiversity is declining dramatically, and meeting the challenges of this crisis requires bold goals and the mobilisation of substantial resources. While the reasons are varied, investments in both research and conservation of freshwater biodiversity lag far behind those in the terrestrial and marine realms. Inspired by a global consultation, we identify 15 pressing priority needs, grouped into five research areas, in an effort to support informed stewardship of freshwater biodiversity. The proposed agenda aims to advance freshwater biodiversity research globally as a critical step in improving coordinated actions towards its sustainable management and conservation.}, note = {Online available at: \url{https://doi.org/10.1111/ele.13931} (DOI). Maasri, A.; Jähnig, S.; Adamescu, M.; Adrian, R.; Baigun, C.; Baird, D.; Batista-Morales, A.; Bonada, N.; Brown, L.; Cai, Q.; Campos-Silva, J.; Clausnitzer, V.; Contreras-MacBeath, T.; Cooke, S.; Datry, T.; Delacámara, G.; De Meester, L.; Dijkstra, K.; Do, V.; Domisch, S.; Dudgeon, D.; Erös, T.; Freitag, H.; Freyhof, J.; Friedrich, J.; Friedrichs-Manthey, M.; Geist, J.; Gessner, M.; Goethals, P.; Gollock, M.; Gordon, C.; Grossart, H.; Gulemvuga, G.; Gutiérrez-Fonseca, P.; Haase, P.; Hering, D.; Hahn, H.; Hawkins, C.; He, F.; Heino, J.; Hermoso, V.; Hogan, Z.; Hölker, F.; Jeschke, J.; Jiang, M.; Johnson, R.; Kalinkat, G.; Karimov, B.; Kasangaki, A.; Kimirei, I.; Kohlmann, B.; Kuemmerlen, M.; Kuiper, J.; Kupilas, B.; Langhans, S.; Lansdown, R.; Leese, F.; Magbanua, F.; Matsuzaki, S.; Monaghan, M.; Mumladze, L.; Muzon, J.; Mvogo Ndongo, P.; Nejstgaard, J.; Nikitina, O.; Ochs, C.; Odume, O.; Opperman, J.; Patricio, H.; Pauls, S.; Raghavan, R.; Ramírez, A.; Rashni, B.; Ross-Gillespie, V.; Samways, M.; Schäfer, R.; Schmidt-Kloiber, A.; Seehausen, O.; Shah, D.; Sharma, S.; Soininen, J.; Sommerwerk, N.; Stockwell, J.; Suhling, F.; Tachamo Shah, R.; Tharme, R.; Thorp, J.; Tickner, D.; Tockner, K.; Tonkin, J.; Valle, M.; Vitule, J.; Volk, M.; Wang, D.; Wolter, C.; Worischka, S.: A global agenda for advancing freshwater biodiversity research. Ecology Letters. 2022. vol. 25, no. 2, 255-263. DOI: 10.1111/ele.13931}} @misc{tuerena_nutrient_pathways_2022, author={Tuerena, R.E.,Mahaffey, C.,Henley, S.F.,de la Vega, C.,Norman, L.,Brand, T.,Sanders, T.,Debyser, M.,Dähnke, K.,Braun, J.,März, C.}, title={Nutrient pathways and their susceptibility to past and future change in the Eurasian Arctic Ocean}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1007/s13280-021-01673-0}, abstract = {Climate change is altering nutrient cycling within the Arctic Ocean, having knock-on effects to Arctic ecosystems. Primary production in the Arctic is principally nitrogen-limited, particularly in the western Pacific-dominated regions where denitrification exacerbates nitrogen loss. The nutrient status of the eastern Eurasian Arctic remains under debate. In the Barents Sea, primary production has increased by 88% since 1998. To support this rapid increase in productivity, either the standing stock of nutrients has been depleted, or the external nutrient supply has increased. Atlantic water inflow, enhanced mixing, benthic nitrogen cycling, and land–ocean interaction have the potential to alter the nutrient supply through addition, dilution or removal. Here we use new datasets from the Changing Arctic Ocean program alongside historical datasets to assess how nitrate and phosphate concentrations may be changing in response to these processes. We highlight how nutrient dynamics may continue to change, why this is important for regional and international policy-making and suggest relevant research priorities for the future.}, note = {Online available at: \url{https://doi.org/10.1007/s13280-021-01673-0} (DOI). Tuerena, R.; Mahaffey, C.; Henley, S.; de la Vega, C.; Norman, L.; Brand, T.; Sanders, T.; Debyser, M.; Dähnke, K.; Braun, J.; März, C.: Nutrient pathways and their susceptibility to past and future change in the Eurasian Arctic Ocean. Ambio. 2022. vol. 51, no. 2, 355-369. DOI: 10.1007/s13280-021-01673-0}} @misc{logemann_assessing_the_2022, author={Logemann, A.,Reininghaus, M.,Schmidt, M.,Ebeling, A.,Zimmermann, T.,Wolschke, H.,Friedrich, J.,Brockmeyer, B.,Pröfrock, D.,Witt, G.}, title={Assessing the chemical anthropocene – Development of the legacy pollution fingerprint in the North Sea during the last century}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.envpol.2022.119040}, abstract = {The North Sea and its coastal zones are heavily impacted by anthropogenic activities, which has resulted in significant chemical pollution ever since the beginning of the industrialization in Europe during the 19th century. In order to assess the chemical Anthropocene, natural archives, such as sediment cores, can serve as a valuable data source to reconstruct historical emission trends and to verify the effectiveness of changing environmental legislation. In this study, we investigated 90 contaminants covering inorganic and organic pollutant groups analyzed in a set of sediment cores taken in the North Seas' main sedimentation area (Skagerrak). We thereby develop a chemical pollution fingerprint that records the constant input of pollutants over time and illustrates their continued great relevance for the present. Additionally, samples were radiometrically dated and PAH and PCB levels in porewater were determined using equilibrium passive sampling. Furthermore, we elucidated the origin of lead (Pb) contamination utilizing non-traditional stable isotopic analysis. Our results reveal three main findings: 1. for all organic contaminant groups covered (PAHs, OCPs, PCBs, PBDEs and PFASs) as well as the elements lead (Pb) and titanium (Ti), determined concentrations decreased towards more recent deposited sediment. These decreasing trends could be linked to the time of introductions of restrictions and bans and therefor our results confirm, amongst possible other factors, the effectiveness of environmental legislation by revealing a successive change in contamination levels over the decades. 2. concentration trends for ΣPAH and ΣPCB measured in porewater correspond well with the ones found in sediment which suggests that this method can be a useful expansion to traditional bulk sediment analysis to determine the biologically available pollutant fraction. 3. Arsenic (As) concentrations were higher in younger sediment layers, potentially caused by emissions of corroded warfare material disposed in the study area after WW II.}, note = {Online available at: \url{https://doi.org/10.1016/j.envpol.2022.119040} (DOI). Logemann, A.; Reininghaus, M.; Schmidt, M.; Ebeling, A.; Zimmermann, T.; Wolschke, H.; Friedrich, J.; Brockmeyer, B.; Pröfrock, D.; Witt, G.: Assessing the chemical anthropocene – Development of the legacy pollution fingerprint in the North Sea during the last century. Environmental Pollution. 2022. vol. 302, 119040. DOI: 10.1016/j.envpol.2022.119040}} @misc{li_utilization_of_2022, author={Li, J.,Li, Y.,Bi, S.,Xu, J.,Guo, F.,Lyu, H.,Dong, X.,Cai, X.}, title={Utilization of GOCI data to evaluate the diurnal vertical migration of Microcystis aeruginosa and the underlying driving factors}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.jenvman.2022.114734}, abstract = {Cyanobacterial blooms are one of the most severe ecological problems affecting lakes. The vertical migration of cyanobacteria in the water column increases the uncertainty in the formation and disappearance of blooms, which may be closely associated with light, temperature, and wind speed. However, it is difficult to quantitatively evaluate the influencing factors of cyanobacteria vertical movement in natural environment compared to the laboratory experimental environment. Besides, both field survey and laboratory experiment method have the difficulties in determining the diurnal vertical migration of cyanobacteria at the synoptic lake scale. In this study, based on the diurnal dynamics of cyanobacterial bloom intensity (CBI) observed by the Geostationary Ocean Color Imager (GOCI) from 2011 to 2019, the daily variations, floating rate, and sinking rate of Microcystis aeruginosa were calculated in the natural environment. Then, the effects of light, temperature, and wind speed on the vertical migration of M. aeruginosa were analysed from the perspectives of day, night, and season. The results are as follows: the records of three typical patterns of diurnal CBI exhibited strong seasonal variability from the 9-year statistics; at night, the buoyancy recovery rate of cyanobacterial colonies increased with temperature, so that at temperature >15 °C and wind speed <3 m s−1, CBI reached the maximum of the whole day at 08:16; the sinking rate of M. aeruginosa was positively correlated with the cumulated light energy at both synoptic and pixel scale; the upward migration speed of M. aeruginosa was positively correlated with the maximum wind speed of the day before cyanobacterial bloom. Therefore, the severer cyanobacterial blooms were often observed by satellite images after strong winds. The analysis of diurnal variation, floating rate, and sinking rate of M. aeruginosa will expand our knowledge for further understanding the formation mechanism of cyanobacterial blooms and for improving the accuracy of model simulation to predict the hourly changes in cyanobacterial blooms in Lake Taihu.}, note = {Online available at: \url{https://doi.org/10.1016/j.jenvman.2022.114734} (DOI). Li, J.; Li, Y.; Bi, S.; Xu, J.; Guo, F.; Lyu, H.; Dong, X.; Cai, X.: Utilization of GOCI data to evaluate the diurnal vertical migration of Microcystis aeruginosa and the underlying driving factors. Journal of Environmental Management. 2022. vol. 310, 114734. DOI: 10.1016/j.jenvman.2022.114734}} @misc{wang_recognition_of_2022, author={Wang, H.,Li, Y.,Zeng, S.,Cai, X.,Bi, S.,Liu, H.,Mu, M.,Dong, X.,Li, J.,Xu, J.,Lyu, H.,Zhu, Y.,Zhang, Y.}, title={Recognition of aquatic vegetation above water using shortwave infrared baseline and phenological features}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.ecolind.2022.108607}, abstract = {Accurate monitoring of emergent aquatic vegetation (EAV) and floating-leave aquatic vegetation (FAV), is vital because vegetation provides a critical habitat for aquatic animals and plays a critical role in protecting biodiversity. However, owing to the interference of water spectrum signals, it is difficult to extract the emerging aquatic vegetation information from remote sensing images, especially to distinguish between EAV and FAV. This study first proposed an enhanced aquatic vegetation index based on the difference in two short-wave infrared (SWIR) bands to extract the aquatic vegetation above the water surface, and then, the EAV and FAV were further distinguished coupled with the phenological characteristics, subsequently, a case study of Taihu Lake for accurately extracting seasonal and annual distributions. The results demonstrate that the proposed aquatic vegetation index is highly sensitive to EAV and FAV, and can further distinguish EAV from them coupled with phenological difference. Additionally, the dramatic changes in EAV and FAV in time and space indicated that human purse seine culture has had a great influence on the succession of aquatic vegetation, which may lead to the deterioration of the water ecology environment. Using the SWIR bands coupled with phenological difference is a promising method for recognizing aquatic vegetation above the water surface owing that it can weaken and eliminate the impact of algal bloom at the same time.}, note = {Online available at: \url{https://doi.org/10.1016/j.ecolind.2022.108607} (DOI). Wang, H.; Li, Y.; Zeng, S.; Cai, X.; Bi, S.; Liu, H.; Mu, M.; Dong, X.; Li, J.; Xu, J.; Lyu, H.; Zhu, Y.; Zhang, Y.: Recognition of aquatic vegetation above water using shortwave infrared baseline and phenological features. Ecological Indicators. 2022. vol. 136, 108607. DOI: 10.1016/j.ecolind.2022.108607}} @misc{albert_a_bayesian_2022, author={Albert, C.,Callies, U.,von Toussaint, U.}, title={A Bayesian Approach to the Estimation of Parameters and Their Interdependencies in Environmental Modeling}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.3390/e24020231}, abstract = {We present a case study for Bayesian analysis and proper representation of distributions and dependence among parameters when calibrating process-oriented environmental models. A simple water quality model for the Elbe River (Germany) is referred to as an example, but the approach is applicable to a wide range of environmental models with time-series output. Model parameters are estimated by Bayesian inference via Markov Chain Monte Carlo (MCMC) sampling. While the best-fit solution matches usual least-squares model calibration (with a penalty term for excessive parameter values), the Bayesian approach has the advantage of yielding a joint probability distribution for parameters. This posterior distribution encompasses all possible parameter combinations that produce a simulation output that fits observed data within measurement and modeling uncertainty. Bayesian inference further permits the introduction of prior knowledge, e.g., positivity of certain parameters. The estimated distribution shows to which extent model parameters are controlled by observations through the process of inference, highlighting issues that cannot be settled unless more information becomes available. An interactive interface enables tracking for how ranges of parameter values that are consistent with observations change during the process of a step-by-step assignment of fixed parameter values. Based on an initial analysis of the posterior via an undirected Gaussian graphical model, a directed Bayesian network (BN) is constructed. The BN transparently conveys information on the interdependence of parameters after calibration. Finally, a strategy to reduce the number of expensive model runs in MCMC sampling for the presented purpose is introduced based on a newly developed variant of delayed acceptance sampling with a Gaussian process surrogate and linear dimensionality reduction to support function-valued outputs.}, note = {Online available at: \url{https://doi.org/10.3390/e24020231} (DOI). Albert, C.; Callies, U.; von Toussaint, U.: A Bayesian Approach to the Estimation of Parameters and Their Interdependencies in Environmental Modeling. Entropy. 2022. vol. 24, no. 2, 231. DOI: 10.3390/e24020231}} @misc{grigoratou_the_marine_2022, author={Grigoratou, M.,Montes, E.,Richardson, A.J.,Everett, J.D.,Acevedo-Trejos, E.,Anderson, C.,Chen, B.,Guy-Haim, T.,Hinners, J.,Lindemann, C.,Garcia, T.M.,Möller, K.O.,Monteiro, F.M.,Neeley, A.R.,O'Brien, T.D.,Palacz, A.P.,Poulton, A.J.,Prowe, A.E.F.,Rodríguez-Santiago, Á.E.,Rousseaux, C.S.,Runge, J.,Saad, J.F.,Santi, I.,Stern, R.,Soccodato, A.,Våge, S.,Vogt, M.,Zervoudaki, S.,Muller-Karger, F.E.}, title={The Marine Biodiversity Observation Network Plankton Workshops: Plankton Ecosystem Function, Biodiversity, and Forecasting - Research Requirements and Applications}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1002/lob.10479}, abstract = {Plankton is a massive and phylogenetically diverse group of thousands of prokaryotes, protists (unicellular eukaryotic organisms), and metazoans (multicellular eukaryotic organisms; Fig. 1). Plankton functional diversity is at the core of various ecological processes, including productivity, carbon cycling and sequestration, nutrient cycling (Falkowski 2012), interspecies interactions, and food web dynamics and structure (D'Alelio et al. 2016). Through these functions, plankton play a critical role in the health of the coastal and open ocean and provide essential ecosystem services. Yet, at present, our understanding of plankton dynamics is insufficient to project how climate change and other human-driven impacts affect the functional diversity of plankton. That limits our ability to predict how critical ecosystem services will change in the future and develop strategies to adapt to these changes.}, note = {Online available at: \url{https://doi.org/10.1002/lob.10479} (DOI). Grigoratou, M.; Montes, E.; Richardson, A.; Everett, J.; Acevedo-Trejos, E.; Anderson, C.; Chen, B.; Guy-Haim, T.; Hinners, J.; Lindemann, C.; Garcia, T.; Möller, K.; Monteiro, F.; Neeley, A.; O'Brien, T.; Palacz, A.; Poulton, A.; Prowe, A.; Rodríguez-Santiago, Á.; Rousseaux, C.; Runge, J.; Saad, J.; Santi, I.; Stern, R.; Soccodato, A.; Våge, S.; Vogt, M.; Zervoudaki, S.; Muller-Karger, F.: The Marine Biodiversity Observation Network Plankton Workshops: Plankton Ecosystem Function, Biodiversity, and Forecasting - Research Requirements and Applications. Limnology and Oceanography. 2022. vol. 31, no. 1, 22-26. DOI: 10.1002/lob.10479}} @misc{townhill_pollution_in_2022, author={Townhill, B.L.,Reppas-Chrysovitsinos, E.,Sühring, R.,Halsall, C.J.,Mengo, E.,Sanders, T.,Dähnke, K.,Crabeck, O.,Kaiser, J.,Birchenough, S.N.R.}, title={Pollution in the Arctic Ocean: An overview of multiple pressures and implications for ecosystem services}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1007/s13280-021-01657-0}, abstract = {The Arctic is undergoing unprecedented change. Observations and models demonstrate significant perturbations to the physical and biological systems. Arctic species and ecosystems, particularly in the marine environment, are subject to a wide range of pressures from human activities, including exposure to a complex mixture of pollutants, climate change and fishing activity. These pressures affect the ecosystem services that the Arctic provides. Current international policies are attempting to support sustainable exploitation of Arctic resources with a view to balancing human wellbeing and environmental protection. However, assessments of the potential combined impacts of human activities are limited by data, particularly related to pollutants, a limited understanding of physical and biological processes, and single policies that are limited to ecosystem-level actions. This manuscript considers how, when combined, a suite of existing tools can be used to assess the impacts of pollutants in combination with other anthropogenic pressures on Arctic ecosystems, and on the services that these ecosystems provide. Recommendations are made for the advancement of targeted Arctic research to inform environmental practices and regulatory decisions.}, note = {Online available at: \url{https://doi.org/10.1007/s13280-021-01657-0} (DOI). Townhill, B.; Reppas-Chrysovitsinos, E.; Sühring, R.; Halsall, C.; Mengo, E.; Sanders, T.; Dähnke, K.; Crabeck, O.; Kaiser, J.; Birchenough, S.: Pollution in the Arctic Ocean: An overview of multiple pressures and implications for ecosystem services. Ambio. 2022. vol. 51, no. 2, 471-483. DOI: 10.1007/s13280-021-01657-0}} @misc{detoni_cyanobacterial_diazotroph_2022, author={Detoni, A.,Subramanian, A.,Haley, S.,Dyhrman, S.,Calil, P.}, title={Cyanobacterial Diazotroph Distributions in the Western South Atlantic}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2022.856643}, abstract = {Inputs of new nitrogen by cyanobacterial diazotrophs are critical to ocean ecosystem structure and function. Relative to other ocean regions, there is a lack of data on the distribution of these microbes in the western South Atlantic. Here, the abundance of six diazotroph phylotypes: Trichodesmium, Crocosphaera, UCYN-A, Richelia associated with Rhizosolenia (Het-1) or Hemiaulus (Het-2), and Calothrix associated with Chaetoceros (Het-3) was measured by quantitative PCR (qPCR) of the nifH gene along a transect extending from the shelf-break to the open ocean along the Vitória-Trindade seamount chain (1200 km). Using nifH gene copies as a proxy for phylotype abundance, Crocosphaera signals were the most abundant, with a broad distribution throughout the study region. Trichodesmium signals were the second most abundant, with the greatest numbers confined to the warmer waters closer to the coast, and a significant positive correlation with temperature. The average signals for the host-associated diazotrophs (UCYN-A, Het-1, and Het-2) were consistently lower than for the other phylotypes. These findings expand measurements of cyanobacterial diazotroph distribution in the western South Atlantic, and provide a new resource to enhance modeling studies focused on patterns of nitrogen fixation in the global ocean.}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2022.856643} (DOI). Detoni, A.; Subramanian, A.; Haley, S.; Dyhrman, S.; Calil, P.: Cyanobacterial Diazotroph Distributions in the Western South Atlantic. Frontiers in Marine Science. 2022. vol. 9, 856643. DOI: 10.3389/fmars.2022.856643}} @misc{sanders_seasonal_nitrogen_2022, author={Sanders, T.,Fiencke, C.,Fuchs, M.,Haugk, C.,Juhls, B.,Mollenhauer, G.,Ogneva, O.,Overduin, P.,Palmtag, J.,Povazhniy, V.,Strauss, J.,Tuerena, R.,Zell, N.,Dähnke, K.}, title={Seasonal nitrogen fluxes of the Lena River Delta}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1007/s13280-021-01665-0}, abstract = {The Arctic is nutrient limited, particularly by nitrogen, and is impacted by anthropogenic global warming which occurs approximately twice as fast compared to the global average. Arctic warming intensifies thawing of permafrost-affected soils releasing their large organic nitrogen reservoir. This organic nitrogen reaches hydrological systems, is remineralized to reactive inorganic nitrogen, and is transported to the Arctic Ocean via large rivers. We estimate the load of nitrogen supplied from terrestrial sources into the Arctic Ocean by sampling in the Lena River and its Delta. We took water samples along one of the major deltaic channels in winter and summer in 2019 and sampling station in the central delta over a one-year cycle. Additionally, we investigate the potential release of reactive nitrogen, including nitrous oxide from soils in the Delta. We found that the Lena transported nitrogen as dissolved organic nitrogen to the coastal Arctic Ocean and that eroded soils are sources of reactive inorganic nitrogen such as ammonium and nitrate. The Lena and the Deltaic region apparently are considerable sources of nitrogen to nearshore coastal zone. The potential higher availability of inorganic nitrogen might be a source to enhance nitrous oxide emissions from terrestrial and aquatic sources to the atmosphere.}, note = {Online available at: \url{https://doi.org/10.1007/s13280-021-01665-0} (DOI). Sanders, T.; Fiencke, C.; Fuchs, M.; Haugk, C.; Juhls, B.; Mollenhauer, G.; Ogneva, O.; Overduin, P.; Palmtag, J.; Povazhniy, V.; Strauss, J.; Tuerena, R.; Zell, N.; Dähnke, K.: Seasonal nitrogen fluxes of the Lena River Delta. Ambio. 2022. vol. 51, no. 2, 423-438. DOI: 10.1007/s13280-021-01665-0}} @misc{spieckermann_oxygen_consumption_2022, author={Spieckermann, M.,Gröngröft, A.,Karrasch, M.,Neumann, A.,Eschenbach, A.}, title={Oxygen Consumption of Resuspended Sediments of the Upper Elbe Estuary: Process Identification and Prognosis}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1007/s10498-021-09401-6}, abstract = {The resuspension of sediment leads to an increased release of nutrients and organic substances into the overlying water column, which can have a negative effect on the oxygen budget. Especially in the warmer months with a lower oxygen saturation and higher biological activity, the oxygen content can reach critical thresholds in estuaries like the upper Elbe estuary. Many studies have dealt with the nutrient fluxes that occur during a resuspension event. However, the sediment properties that influence the oxygen consumption potential (OCP) and the different biochemical processes have not been examined in detail. To fill this gap, we investigated the biogeochemical composition, texture, and OCP of sediments at 21 locations as well as the temporal variability within one location for a period of 2 years (monthly sampling) in the upper Elbe estuary. The OCP of sediments during a seven-day resuspension event can be described by the processes of sulphate formation, nitrification, and mineralisation. Chlorophyll, total nitrogen (Ntotal), and total organic carbon showed the highest correlations with the OCP. Based on these correlations, we developed a prognosis model to calculate the OCP for the upper Elbe estuary with a single sediment parameter (Ntotal). The model is well suited to calculate the oxygen consumption of resuspended sediments in the Hamburg port area during the relevant warmer months and shows a normalised root mean squared error of < 0.11 ± 0.13. Thus, the effect of maintenance measures such as water injection dredging and ship-induced wave on the oxygen budget of the water can be calculated.}, note = {Online available at: \url{https://doi.org/10.1007/s10498-021-09401-6} (DOI). Spieckermann, M.; Gröngröft, A.; Karrasch, M.; Neumann, A.; Eschenbach, A.: Oxygen Consumption of Resuspended Sediments of the Upper Elbe Estuary: Process Identification and Prognosis. Aquatic Geochemistry. 2022. vol. 28, 1-25. DOI: 10.1007/s10498-021-09401-6}} @misc{tian_nitrate_regeneration_2022, author={Tian, S.,Gaye, B.,Tang, J.,Luo, Y.,Lahajnar, N.,Dähnke, K.,Sanders, T.,Xiong, T.,Zhai, W.,Emeis, K.-C.}, title={Nitrate Regeneration and Loss in the Central Yellow Sea Bottom Water Revealed by Nitrogen Isotopes}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2022.834953}, abstract = {The Yellow Sea (YS) is an epicontinental sea framed by the densely populated mainland of China and the Korean peninsula. Human activities over the last decades resulted in heavily increasing discharge of reactive nitrogen into the YS, which created numerous ecological problems. To elucidate the role of central YS in the cycling of reactive nitrogen, specifically the Yellow Sea Cold Water Mass (YSCWM), we determined nutrient concentrations, dual stable isotopes of nitrate (δ15N-NO−3 and δ18O-NO−3), and stable isotopes of particulate and sedimentary nitrogen in spring and summer, i.e., in biologically inactive and active periods. The nitrate concentration in spring was higher than that in summer in the northern part of the YSCWM, Nitrate increased in the southern part accompanied by a decrease in δ15N-NO−3 and δ18O-NO−3, which are indicative of nitrification that was a significant source of recycled nitrate in the south part of YSCWM. To quantify this regenerated nitrate, we use a mixing model with end members of preformed nitrate in spring and regenerated nitrate in summer, both with their distinct dual isotope values. The results suggest that only 35% nitrate was a residual of nitrate preformed in spring and 65% in summer in the southern branch of YSCWM was regenerated. The northern part of YSCWM has low concentrations of dissolved inorganic nitrogen, mainly because of denitrification in sediments. In contrast, the southern pool of YSCWM is a growing reservoir of regenerated terrestrial reactive nitrogen, the addition of which compensates the removal by co-occurring sediment denitrification. In consequence, the southern branch of YSCWM is facing a higher ecological risk than the northern branch, when excess reactive nitrogen discharge from Changjiang River continues at present levels or even increases.}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2022.834953} (DOI). Tian, S.; Gaye, B.; Tang, J.; Luo, Y.; Lahajnar, N.; Dähnke, K.; Sanders, T.; Xiong, T.; Zhai, W.; Emeis, K.: Nitrate Regeneration and Loss in the Central Yellow Sea Bottom Water Revealed by Nitrogen Isotopes. Frontiers in Marine Science. 2022. vol. 9, 834953. DOI: 10.3389/fmars.2022.834953}} @misc{strauss_a_globally_2022, author={Strauss, J.,Biasi, C.,Sanders, T.,Abbott, B.W.,von Deimling, T.S.,Voigt, C.,Winkel, M.,Marushchak, M.E.,Kou, D.,Fuchs, M.,Horn, M.A.,Jongejans, L.L.,Liebner, S.,Nitzbon, J.,Schirrmeister, L.,Walter Anthony, K.,Yang, Y.,Zubrzycki, S.,Laboor, S.,Treat, C.,Grosse, G.}, title={A globally relevant stock of soil nitrogen in the Yedoma permafrost domain}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1038/s41467-022-33794-9}, abstract = {Nitrogen regulates multiple aspects of the permafrost climate feedback, including plant growth, organic matter decomposition, and the production of the potent greenhouse gas nitrous oxide. Despite its importance, current estimates of permafrost nitrogen are highly uncertain. Here, we compiled a dataset of >2000 samples to quantify nitrogen stocks in the Yedoma domain, a region with organic-rich permafrost that contains ~25% of all permafrost carbon. We estimate that the Yedoma domain contains 41.2 gigatons of nitrogen down to ~20 metre for the deepest unit, which increases the previous estimate for the entire permafrost zone by ~46%. Approximately 90% of this nitrogen (37 gigatons) is stored in permafrost and therefore currently immobile and frozen. Here, we show that of this amount, ¾ is stored >3 metre depth, but if partially mobilised by thaw, this large nitrogen pool could have continental-scale consequences for soil and aquatic biogeochemistry and global-scale consequences for the permafrost feedback.}, note = {Online available at: \url{https://doi.org/10.1038/s41467-022-33794-9} (DOI). Strauss, J.; Biasi, C.; Sanders, T.; Abbott, B.; von Deimling, T.; Voigt, C.; Winkel, M.; Marushchak, M.; Kou, D.; Fuchs, M.; Horn, M.; Jongejans, L.; Liebner, S.; Nitzbon, J.; Schirrmeister, L.; Walter Anthony, K.; Yang, Y.; Zubrzycki, S.; Laboor, S.; Treat, C.; Grosse, G.: A globally relevant stock of soil nitrogen in the Yedoma permafrost domain. Nature Communications. 2022. vol. 13, no. 1, 6074. DOI: 10.1038/s41467-022-33794-9}} @misc{macovei_mesoscale_advective_2022, author={Macovei, V.,Callies, U.,Calil, P.,Voynova, Y.}, title={Mesoscale Advective and Biological Processes Alter Carbon Uptake Capacity in a Shelf Sea}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2022.827075}, abstract = {Marine uptake of carbon dioxide reduces the accumulation of carbon dioxide in the atmosphere. Continental shelf seas are essential for carbon uptake from the atmosphere, but are also highly variable environments, for which uncertainties of carbon budget estimates are large. Recent studies indicate that their carbon sink capacity is weakening. A way to reduce the uncertainty of carbon budgets is to increase our observational capacity, for example through FerryBox installations on Ships-of-Opportunity. Here, we compare FerryBox observations in the North Sea for the fall seasons of 2019 and 2020. We show that short-lived mesoscale events can be characterized when the sampling resolution is adequately high, and that these events cause changes in essential environmental variables on the same magnitude as seasonal cycles. Whether advective or biological in origin, these events rapidly lowered seawater pCO2 by 8–10% and influenced the carbon uptake capacity. We demonstrate the importance of resolving and integrating the variability of these smaller features in regional carbon budget assessments and advocate for the tuning of models in order to capture this small-scale variability.}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2022.827075} (DOI). Macovei, V.; Callies, U.; Calil, P.; Voynova, Y.: Mesoscale Advective and Biological Processes Alter Carbon Uptake Capacity in a Shelf Sea. Frontiers in Marine Science. 2022. vol. 9, 827075. DOI: 10.3389/fmars.2022.827075}} @misc{fuchs_highresolution_bathymetry_2022, author={Fuchs, M.,Palmtag, J.,Juhls, B.,Overduin, P. P.,Grosse, G.,Abdelwahab, A.,Bedington, M.,Sanders, T.,Ogneva, O.,Fedorova, I. V.,Zimov, N. S.,Mann, P. J.,Strauss, J.}, title={High-resolution bathymetry models for the Lena Delta and Kolyma Gulf coastal zones}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.5194/essd-14-2279-2022}, abstract = {Arctic river deltas and deltaic near-shore zones represent important land–ocean transition zones influencing sediment dynamics and nutrient fluxes from permafrost-affected terrestrial ecosystems into the coastal Arctic Ocean. To accurately model fluvial carbon and freshwater export from rapidly changing river catchments as well as assess impacts of future change on the Arctic shelf and coastal ecosystems, we need to understand the sea floor characteristics and topographic variety of the coastal zones. To date, digital bathymetrical data from the poorly accessible, shallow, and large areas of the eastern Siberian Arctic shelves are sparse. We have digitized bathymetrical information for nearly 75 000 locations from large-scale (1:25 000–1:500 000) current and historical nautical maps of the Lena Delta and the Kolyma Gulf region in northeastern Siberia. We present the first detailed and seamless digital models of coastal zone bathymetry for both delta and gulf regions in 50 and 200 m spatial resolution. We validated the resulting bathymetry layers using a combination of our own water depth measurements and a collection of available depth measurements, which showed a strong correlation (r>0.9). Our bathymetrical models will serve as an input for a high-resolution coupled hydrodynamic–ecosystem model to better quantify fluvial and coastal carbon fluxes to the Arctic Ocean, but they may be useful for a range of other studies related to Arctic delta and near-shore dynamics such as modeling of submarine permafrost, near-shore sea ice, or shelf sediment transport. The new digital high-resolution bathymetry products are available on the PANGAEA data set repository for the Lena Delta (https://doi.org/10.1594/PANGAEA.934045; Fuchs et al., 2021a) and Kolyma Gulf region (https://doi.org/10.1594/PANGAEA.934049; Fuchs et al., 2021b), respectively. Likewise, the depth validation data are available on PANGAEA as well (https://doi.org/10.1594/PANGAEA.933187; Fuchs et al., 2021c).}, note = {Online available at: \url{https://doi.org/10.5194/essd-14-2279-2022} (DOI). Fuchs, M.; Palmtag, J.; Juhls, B.; Overduin, P.; Grosse, G.; Abdelwahab, A.; Bedington, M.; Sanders, T.; Ogneva, O.; Fedorova, I.; Zimov, N.; Mann, P.; Strauss, J.: High-resolution bathymetry models for the Lena Delta and Kolyma Gulf coastal zones. Earth System Science Data. 2022. vol. 14, no. 5, 2279-2301. DOI: 10.5194/essd-14-2279-2022}} @misc{shi_wind_induced_2022, author={Shi, W.,Zhu, L.,Van Dam, B.,Smyth, A.R.,Deng, J.,Zhou, J.,Pan, G.,Yi, Q.,Yu, J.,Qin, B.}, title={Wind induced algal migration manipulates sediment denitrification N-loss patterns in shallow Taihu Lake, China}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.watres.2021.117887}, abstract = {Driven by winds, the distribution of algae is often noticeably patchy at kilometer scales in shallow lakes. The decomposition of the settled algal biomass may affect nitrogen (N) biogeochemical cycles and thereby N loss in sediments. In this study, we investigated sediment denitrification N-loss patterns along algal migration pathway in Taihu Lake, a shallow and eutrophic lake in China, and found that wind-induced algal migration in the overlying water manipulated the temporal and spatial patterns of denitrification N-loss in sediments. A N loss hotspot in sediments was created in the algae concentrated zone, where N loss was, however, temporarily inhibited during algal bloom seasons and generally exhibited a negative relationship with algal biomass. In the zone where algae have left, sediment N loss rate was relatively low and positively correlated with algal biomass. The decay of algal biomass generated organic carbon and created anoxia, favoring denitrification, while excessive algal biomass could deplete oxygen and inhibit nitrification, causing nitrate limitation for denitrification. Piecewise linear regression analysis indicated that algal biomass of Chl-a > 73.0 μg/L in the overlying water could inhibit denitrification N-loss in sediments. This study adds to our understanding of N biogeochemical cycles in shallow eutrophic lakes.}, note = {Online available at: \url{https://doi.org/10.1016/j.watres.2021.117887} (DOI). Shi, W.; Zhu, L.; Van Dam, B.; Smyth, A.; Deng, J.; Zhou, J.; Pan, G.; Yi, Q.; Yu, J.; Qin, B.: Wind induced algal migration manipulates sediment denitrification N-loss patterns in shallow Taihu Lake, China. Water Research. 2022. vol. 209, 117887. DOI: 10.1016/j.watres.2021.117887}} @misc{dhnke_nitrogen_isotopes_2022, author={Dähnke, K.,Sanders, T.,Voynova, Y.,Wankel, S.}, title={Nitrogen isotopes reveal a particulate-matter-driven biogeochemical reactor in a temperate estuary}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-19-5879-2022}, abstract = {Estuaries and rivers are important biogeochemical reactors that act to modify the loads and composition of nutrients in the coastal zone. In a case study during July 2013, we sampled an 80 km transect along the Elbe Estuary under low-oxygen conditions. To better elucidate specific mechanisms of estuarine nitrogen processing, we tracked the evolution of the stable isotopic composition of nitrate, nitrite, particulate matter, and ammonium through the water column. This approach allowed assessment of the in situ isotope effects of ammonium and nitrite oxidation and of remineralization at the reach scale. The isotope effects of nitrite oxidation and ammonium oxidation were consistent with pure-culture assessments. We found that the nitrogen budget of the Elbe Estuary is governed by settling, resuspension, and remineralization of particulate matter, and we further used our stable isotope data to evaluate sources and sinks of nitrogen in the Elbe Estuary via an isotope mass-balance approach. We find that the reactivity of particulate matter, through its remineralization in the estuary, is the main control on the isotope dynamics of inorganic nitrogen species. Moreover, while underscoring this role of particulate matter delivery and reactivity, the isotope mass balance also indicated additional sinks of reactive nitrogen, such as possible denitrification of water column nitrate in the intensively dredged and deep Hamburg Harbor region.}, note = {Online available at: \url{https://doi.org/10.5194/bg-19-5879-2022} (DOI). Dähnke, K.; Sanders, T.; Voynova, Y.; Wankel, S.: Nitrogen isotopes reveal a particulate-matter-driven biogeochemical reactor in a temperate estuary. Biogeosciences. 2022. vol. 19, no. 24, 5879-5891. DOI: 10.5194/bg-19-5879-2022}} @misc{valente_a_compilation_2022, author={Valente, A.,Sathyendranath, S.,Brotas, V.,Groom, S.,Grant, M.,Jackson, T.,Chuprin, A.,Taberner, M.,Airs, R.,Antoine, D.,Arnone, R.,Balch, W. M.,Barker, K.,Barlow, R.,Bélanger, S.,Berthon, J.-F.,Beşiktepe, Ş.,Borsheim, Y.,Bracher, A.,Brando, V.,Brewin, R. J. W.,Canuti, E.,Chavez, F. P.,Cianca, A.,Claustre, H.,Clementson, L.,Crout, R.,Ferreira, A.,Freeman, S.,Frouin, R.,García-Soto, C.,Gibb, S. W.,Goericke, R.,Gould, R.,Guillocheau, N.,Hooker, S. B.,Hu, C.,Kahru, M.,Kampel, M.,Klein, H.,Kratzer, S.,Kudela, R.,Ledesma, J.,Lohrenz, S.,Loisel, H.,Mannino, A.,Martinez-Vicente, V.,Matrai, P.,McKee, D.,Mitchell, B. G.,Moisan, T.,Montes, E.,Muller-Karger, F.,Neeley, A.,Novak, M.,O'Dowd, L.,Ondrusek, M.,Platt, T.,Poulton, A. J.,Repecaud, M.,Röttgers, R.,Schroeder, T.,Smyth, T.,Smythe-Wright, D.,Sosik, H. M.,Thomas, C.,Thomas, R.,Tilstone, G.,Tracana, A.,Twardowski, M.,Vellucci, V.,Voss, K.,Werdell, J.,Wernand, M.,Wojtasiewicz, B.,Wright, S.,Zibordi, G.}, title={A compilation of global bio-optical in situ data for ocean colour satellite applications – version three}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.5194/essd-14-5737-2022}, abstract = {A global in situ data set for validation of ocean colour products from the ESA Ocean Colour Climate Change Initiative (OC-CCI) is presented. This version of the compilation, starting in 1997, now extends to 2021, which is important for the validation of the most recent satellite optical sensors such as Sentinel 3B OLCI and NOAA-20 VIIRS. The data set comprises in situ observations of the following variables: spectral remote-sensing reflectance, concentration of chlorophyll-a, spectral inherent optical properties, spectral diffuse attenuation coefficient, and total suspended matter. Data were obtained from multi-project archives acquired via open internet services or from individual projects acquired directly from data providers. Methodologies were implemented for homogenization, quality control, and merging of all data. Minimal changes were made on the original data, other than conversion to a standard format, elimination of some points, after quality control and averaging of observations that were close in time and space. The result is a merged table available in text format. Overall, the size of the data set grew with 148 432 rows, with each row representing a unique station in space and time (cf. 136 250 rows in previous version; Valente et al., 2019). Observations of remote-sensing reflectance increased to 68 641 (cf. 59 781 in previous version; Valente et al., 2019). There was also a near tenfold increase in chlorophyll data since 2016. Metadata of each in situ measurement (original source, cruise or experiment, principal investigator) are included in the final table. By making the metadata available, provenance is better documented and it is also possible to analyse each set of data separately. The compiled data are available at https://doi.org/10.1594/PANGAEA.941318 (Valente et al., 2022).}, note = {Online available at: \url{https://doi.org/10.5194/essd-14-5737-2022} (DOI). Valente, A.; Sathyendranath, S.; Brotas, V.; Groom, S.; Grant, M.; Jackson, T.; Chuprin, A.; Taberner, M.; Airs, R.; Antoine, D.; Arnone, R.; Balch, W.; Barker, K.; Barlow, R.; Bélanger, S.; Berthon, J.; Beşiktepe, Ş.; Borsheim, Y.; Bracher, A.; Brando, V.; Brewin, R.; Canuti, E.; Chavez, F.; Cianca, A.; Claustre, H.; Clementson, L.; Crout, R.; Ferreira, A.; Freeman, S.; Frouin, R.; García-Soto, C.; Gibb, S.; Goericke, R.; Gould, R.; Guillocheau, N.; Hooker, S.; Hu, C.; Kahru, M.; Kampel, M.; Klein, H.; Kratzer, S.; Kudela, R.; Ledesma, J.; Lohrenz, S.; Loisel, H.; Mannino, A.; Martinez-Vicente, V.; Matrai, P.; McKee, D.; Mitchell, B.; Moisan, T.; Montes, E.; Muller-Karger, F.; Neeley, A.; Novak, M.; O'Dowd, L.; Ondrusek, M.; Platt, T.; Poulton, A.; Repecaud, M.; Röttgers, R.; Schroeder, T.; Smyth, T.; Smythe-Wright, D.; Sosik, H.; Thomas, C.; Thomas, R.; Tilstone, G.; Tracana, A.; Twardowski, M.; Vellucci, V.; Voss, K.; Werdell, J.; Wernand, M.; Wojtasiewicz, B.; Wright, S.; Zibordi, G.: A compilation of global bio-optical in situ data for ocean colour satellite applications – version three. Earth System Science Data. 2022. vol. 14, no. 12, 5737-5770. DOI: 10.5194/essd-14-5737-2022}} @misc{teschke_critterbase_a_2022, author={Teschke, K.,Kraan, C.,Kloss, P.,Andresen, H.,Beermann, J.,Fiorentino, D.,Gusky, M.,Hansen, M.L.S.,Konijnenberg, R.,Koppe, R.,Pehlke, H.,Piepenburg, D.,Sabbagh, T.,Wrede, A.,Brey, T.,Dannheim, J.}, title={CRITTERBASE, a science-driven data warehouse for marine biota}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1038/s41597-022-01590-1}, abstract = {Data on marine biota exist in many formats and sources, such as published literature, data repositories, and unpublished material. Due to this heterogeneity, information is difficult to find, access and combine, severely impeding its reuse for further scientific analysis and its long-term availability for future generations. To address this challenge, we present CRITTERBASE, a publicly accessible data warehouse and interactive portal that currently hosts quality-controlled and taxonomically standardized presence/absence, abundance, and biomass data for 18,644 samples and 3,664 benthic taxa (2,824 of which at species level). These samples were collected by grabs, underwater imaging or trawls in Arctic, North Sea and Antarctic regions between the years 1800 and 2014. Data were collated from literature, unpublished data, own research and online repositories. All metadata and links to primary sources are included. We envision CRITTERBASE becoming a valuable and continuously expanding tool for a wide range of usages, such as studies of spatio-temporal biodiversity patterns, impacts and risks of climate change or the evidence-based design of marine protection policies.}, note = {Online available at: \url{https://doi.org/10.1038/s41597-022-01590-1} (DOI). Teschke, K.; Kraan, C.; Kloss, P.; Andresen, H.; Beermann, J.; Fiorentino, D.; Gusky, M.; Hansen, M.; Konijnenberg, R.; Koppe, R.; Pehlke, H.; Piepenburg, D.; Sabbagh, T.; Wrede, A.; Brey, T.; Dannheim, J.: CRITTERBASE, a science-driven data warehouse for marine biota. Scientific Data. 2022. vol. 9, no. 1, 483. DOI: 10.1038/s41597-022-01590-1}} @misc{wang_lowfrequency_noise_2022, author={Wang, S.,Wrede, A.,Tremblay, N.,Beermann, J.}, title={Low-frequency noise pollution impairs burrowing activities of marine benthic invertebrates}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.envpol.2022.119899}, abstract = {Sounds from human activities such as shipping and seismic surveys have been progressively invading natural soundscapes and pervading oceanic ambient sounds for decades. Benthic invertebrates are important ecosystem engineers that continually rework the sediment they live in. Here, we tested how low-frequency noise (LFN), a significant component of noise pollution, affects the sediment reworking activities of selected macrobenthic invertebrates. In a controlled laboratory setup, the effects of acute LFN exposure on the behavior of three abundant bioturbators on the North Atlantic coasts were explored for the first time by tracking their sediment reworking and bioirrigation activities in noisy and control environments via luminophore and sodium bromide (NaBr) tracers, respectively. The amphipod crustacean Corophium volutator was negatively affected by LFN, exhibiting lower bioturbation rates and shallower luminophore burial depths compared to controls. The effect of LFN on the polychaete Arenicola marina and the bivalve Limecola balthica remained inconclusive, although A. marina displayed greater variability in bioirrigation rates when exposed to LFN. Furthermore, a potential stress response was observed in L. balthica that could reduce bioturbation potential. Benthic macroinvertebrates may be in jeopardy along with the crucial ecosystem-maintaining services they provide. More research is urgently needed to understand, predict, and manage the impacts of anthropogenic noise pollution on marine fauna and their associated ecosystems.}, note = {Online available at: \url{https://doi.org/10.1016/j.envpol.2022.119899} (DOI). Wang, S.; Wrede, A.; Tremblay, N.; Beermann, J.: Low-frequency noise pollution impairs burrowing activities of marine benthic invertebrates. Environmental Pollution. 2022. vol. 310, 119899. DOI: 10.1016/j.envpol.2022.119899}} @misc{zhang_ecoengineering_approaches_2022, author={Zhang, C.,Shi, T.,Liu, J.,He, Z.,Thomas, H.,Dong, H.,Rinkevich, B.,Wang, Y.,Hyun, J.-H.,Weinbauer, M.,López-Abbate, C.,Tu, Q.,Xie, S.,Yamashita, Y.,Tishchenko, P.,Chen, Q.,Zhang, R.,Jiao, N.}, title={Eco-engineering approaches for ocean negative carbon emission}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.scib.2022.11.016}, abstract = {The goal of achieving carbon neutrality in the next 30–40 years is approaching worldwide consensus and requires coordinated efforts to combat the increasing threat of climate change. Two main sets of actions have been proposed to address this grand goal. One is to reduce anthropogenic CO2 emissions to the atmosphere, and the other is to increase carbon sinks or negative emissions, i.e., removing CO2 from the atmosphere. Here we advocate eco-engineering approaches for ocean negative carbon emission (ONCE), aiming to enhance carbon sinks in the marine environment. An international program is being established to promote coordinated efforts in developing ONCE-relevant strategies and methodologies, taking into consideration ecological/biogeochemical processes and mechanisms related to different forms of carbon (inorganic/organic, biotic/abiotic, particulate/dissolved) for sequestration. We focus on marine ecosystem-based approaches and pay special attention to mechanisms that require transformative research, including those elucidating interactions between the biological pump (BP), the microbial carbon pump (MCP), and microbially induced carbonate precipitation (MICP). Eutrophic estuaries, hypoxic and anoxic waters, coral reef ecosystems, as well as aquaculture areas are particularly considered in the context of efforts to increase their capacity as carbon sinks. ONCE approaches are thus expected to be beneficial for both carbon sequestration and alleviation of environmental stresses.}, note = {Online available at: \url{https://doi.org/10.1016/j.scib.2022.11.016} (DOI). Zhang, C.; Shi, T.; Liu, J.; He, Z.; Thomas, H.; Dong, H.; Rinkevich, B.; Wang, Y.; Hyun, J.; Weinbauer, M.; López-Abbate, C.; Tu, Q.; Xie, S.; Yamashita, Y.; Tishchenko, P.; Chen, Q.; Zhang, R.; Jiao, N.: Eco-engineering approaches for ocean negative carbon emission. Science Bulletin. 2022. vol. 67, no. 24, 2564-2573. DOI: 10.1016/j.scib.2022.11.016}} @misc{asatryan_how_do_2022, author={Asatryan, G.,Harbott, M.,Todorović, S.,Kaplan, J.,Lazarus, D.,Lee, C.,Parmesan, C.,Renaudie, J.,Thomas, H.,Wu, H.,Richards, C.}, title={How Do Organisms Affect and Respond to Climate Change?}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.3389/frym.2022.703195}, abstract = {Life on Earth is diverse at many levels, meaning there is a lot of variety within species and there are many different kinds of species. This biodiversity provides many of the resources that humans need and enhances our quality of life. All of Earth’s organisms are affected by Earth’s climate, but they also influence Earth’s climate. In this article, we show how research on plants, animals, and microbes helps us better understand how living things can both impact and respond to climate change. This research also gives us insight into what the future might be like for life on Earth. Such knowledge will help us to protect our planet—and the living things on it—from the harmful effects of future climate change.}, note = {Online available at: \url{https://doi.org/10.3389/frym.2022.703195} (DOI). Asatryan, G.; Harbott, M.; Todorović, S.; Kaplan, J.; Lazarus, D.; Lee, C.; Parmesan, C.; Renaudie, J.; Thomas, H.; Wu, H.; Richards, C.: How Do Organisms Affect and Respond to Climate Change?. Frontiers for Young Minds. 2022. vol. 10, 703195. DOI: 10.3389/frym.2022.703195}} @misc{norbisrath_metabolic_alkalinity_2022, author={Norbisrath, M.,Pätsch, J.,Dähnke, K.,Sanders, T.,Schulz, G.,van Beusekom, J.,Thomas, H.}, title={Metabolic alkalinity release from large port facilities (Hamburg, Germany) and impact on coastal carbon storage}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-19-5151-2022}, abstract = {Metabolic activities in estuaries, especially these of large rivers, profoundly affect the downstream coastal biogeochemistry. Here, we unravel the impacts of large industrial port facilities, showing that elevated metabolic activity in the Hamburg port (Germany) increases total alkalinity (TA) and dissolved inorganic carbon (DIC) runoff to the North Sea. The imports of particulate inorganic carbon, particulate organic carbon, and particulate organic nitrogen (PIC, POC, and PON) from the upstream Elbe River can fuel up to 90 % of the TA generated in the entire estuary via calcium carbonate (CaCO3) dissolution. The remaining at least 10 % of TA generation can be attributed to anaerobic metabolic processes such as denitrification of remineralized PON or other pathways. The Elbe Estuary as a whole adds approximately 15 % to the overall DIC and TA runoff. Both the magnitude and partitioning among these processes appear to be sensitive to climatic and anthropogenic changes. Thus, with increased TA loads, the coastal ocean (in particular) would act as a stronger CO2 sink, resulting in changes to the overall coastal system's capacity to store CO2.}, note = {Online available at: \url{https://doi.org/10.5194/bg-19-5151-2022} (DOI). Norbisrath, M.; Pätsch, J.; Dähnke, K.; Sanders, T.; Schulz, G.; van Beusekom, J.; Thomas, H.: Metabolic alkalinity release from large port facilities (Hamburg, Germany) and impact on coastal carbon storage. Biogeosciences. 2022. vol. 19, no. 22, 5151-5165. DOI: 10.5194/bg-19-5151-2022}} @misc{vonderau_characteristic_regional_2022, author={von der Au, M.,Zimmermann, T.,Kleeberg, U.,von Tümpling, W.,Pröfrock, D.}, title={Characteristic regional differences in trace element pattern of 2014 German North Sea surface Wadden sediments – A judge and assessment}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.marpolbul.2022.114208}, abstract = {The European Marine Strategy Framework Directive (MSFD) requires good ecological status of the marine environment. This also includes the Wadden Sea located in the southeastern part of the North Sea and its chemical status of sediments. Based on results from campaigns conducted in the 1980s, 32 surface sediment samples were taken in 2014 to check whether the sampling strategy required for characterizing the trace element content in sediments is representative and to determine the degree of pollution and potential changes over the last decades. For this purpose the elemental mass fractions of 42 elements were assessed in the ≤20 μm grain size fraction of the surface sediments.}, note = {Online available at: \url{https://doi.org/10.1016/j.marpolbul.2022.114208} (DOI). von der Au, M.; Zimmermann, T.; Kleeberg, U.; von Tümpling, W.; Pröfrock, D.: Characteristic regional differences in trace element pattern of 2014 German North Sea surface Wadden sediments – A judge and assessment. Marine Pollution Bulletin. 2022. vol. 184, 114208. DOI: 10.1016/j.marpolbul.2022.114208}} @misc{waldmann_a_methodology_2022, author={Waldmann, C.,Fischer, P.,Seitz, S.,Köllner, M.,Fischer, J.,Bergenthal, M.,Brix, H.,Weinreben, S.,Huber, R.}, title={A methodology to uncertainty quantification of essential ocean variables}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2022.1002153}, abstract = {The goal of this study is to provide a universally applicable procedure for a systematic evaluation of in situ measured data from single sensors regarding quantifying the uncertainty of the measurement results. As determining uncertainty for an environmental parameter also depends on the parameter itself, the focus here will be set on the variable water temperature in the first place. A separate analysis for salinity and other data will follow in later publications. With this first of a series of planned manuscripts on different parameters, we aim at providing a common understanding of how measurement uncertainty on single sensor measurements can be derived. Using an experimental in situ set-up with 6 different standard CTD sensors of two different brands, we created a four month-long, high-quality data set to be used to develop a reliable method for quantifying measurement uncertainties. Although the CTDs were deployed in a mooring in a coastal environment the described method can be extended to other deployment configurations as well. The described procedures have evolved as a stepwise process that takes the different perspectives of the involved authors into account, as well as the special conditions for environmental measurements, which are collected while the observed volume/area is undergoing a constant change. By sharing the ideas with other stakeholders, the basic concept can be extended to other observing programs and to other essential ocean variables.}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2022.1002153} (DOI). Waldmann, C.; Fischer, P.; Seitz, S.; Köllner, M.; Fischer, J.; Bergenthal, M.; Brix, H.; Weinreben, S.; Huber, R.: A methodology to uncertainty quantification of essential ocean variables. Frontiers in Marine Science. 2022. vol. 9, 1002153. DOI: 10.3389/fmars.2022.1002153}} @misc{juhls_seasonal_dynamics_2022, author={Juhls, B.,Matsuoka, A.,Lizotte, M.,Bécu, G.,Overduin, P.P.,El Kassar, J.,Devred, E.,Doxaran, D.,Ferland, J.,Forget, M.H.,Hilborn, A.,Hieronymi, M.,Leymarie, E.,Maury, J.,Oziel, L.,Tisserand, L.,Anikina, D.O.J.,Dillon, M.,Babin, M.}, title={Seasonal dynamics of dissolved organic matter in the Mackenzie Delta, Canadian Arctic waters: Implications for ocean colour remote sensing}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.rse.2022.113327}, abstract = {Increasing air temperatures and associated permafrost thaw in Arctic river watersheds, such as the Mackenzie River catchment, are directly affecting the aquatic environment. As a consequence, the quantity and the quality of dissolved organic carbon (DOC) that is transported via the Mackenzie River into the Arctic Ocean is expected to change. Particularly in these remote permafrost regions of the Arctic, monitoring of terrigenous organic carbon fluxes is insufficient and knowledge of distribution and fate of organic carbon when released to the coastal waters is remarkably lacking. Despite its poorly evaluated performance in Arctic coastal waters, Satellite Ocean Colour Remote Sensing (SOCRS) remains a powerful tool to complement monitoring of land-ocean DOC fluxes, detect their trends, and help in understanding their propagation in the Arctic Ocean.,In this study, we use in situ and SOCRS data to show the strong seasonal dynamics of the Mackenzie River plume and the spatial distribution of associated terrigenous DOC on the Beaufort Sea Shelf for the first time. Using a dataset collected during an extensive field campaign in 2019, the performance of three commonly-used atmospheric correction (AC) algorithms and two available colored dissolved organic matter (CDOM) retrieval algorithms were evaluated using the Ocean and Land Colour Instrument (OLCI). Our results showed that in optically-complex Arctic coastal waters the Polymer AC algorithm performed the best. For the retrieval of CDOM, the gsmA algorithm (Mean Percentage Error (MPE) = 35.7%) showed slightly more consistent results compared to the ONNS algorithm (MPE = 37.9%). By merging our measurements with published datasets, the newly-established DOC-CDOM relationship for the Mackenzie-Beaufort Sea region allowed estimations of DOC concentrations from SOCRS across the entire fluvial-marine transition zone with an MPE of 20.5%. Finally, we applied SOCRS with data from the Sentinel-3 OLCI sensor to illustrate the seasonal variation of DOC concentrations in the surface waters of the Beaufort Sea on a large spatial scales and high frequency throughout the entire open water period. Highest DOC concentrations and largest lateral extent of the plume were observed in spring right after the Mackenzie River ice break-up indicating that the freshet was the main driver of plume propagation and DOC distribution on the shelf. Satellite-derived images of surface water DOC concentration placed the in situ observations into a larger temporal and spatial context and revealed a strong seasonal variability in transport pathways of DOC in the Mackenzie- Beaufort Sea region.}, note = {Online available at: \url{https://doi.org/10.1016/j.rse.2022.113327} (DOI). Juhls, B.; Matsuoka, A.; Lizotte, M.; Bécu, G.; Overduin, P.; El Kassar, J.; Devred, E.; Doxaran, D.; Ferland, J.; Forget, M.; Hilborn, A.; Hieronymi, M.; Leymarie, E.; Maury, J.; Oziel, L.; Tisserand, L.; Anikina, D.; Dillon, M.; Babin, M.: Seasonal dynamics of dissolved organic matter in the Mackenzie Delta, Canadian Arctic waters: Implications for ocean colour remote sensing. Remote Sensing of Environment. 2022. vol. 283, 113327. DOI: 10.1016/j.rse.2022.113327}} @misc{carlson_sailing_into_2022, author={Carlson, D.,Pett, P.,Peissel, N.,Bonnardeaux, C.,Suaria, G.}, title={Sailing into an Uncertain Future - Connecting Sailors and Scientists to Monitor the Pulse of the Changing Arctic}, year={2022}, howpublished = {journal article}, abstract = {The number of sailing yachts that are venturing into Arctic waters has increased in the past decade. As a result, the sailing community has the potential to transform observational studies in the region. Longterm, cross-border engagement strategies are necessary to transition to a persistent and organized presence of sailing citizen scientists in the Arctic. In addition to tapping the well of citizen science, sailboats can provide scientists with affordable, flexible, and sustainable research platforms.}, note = {Online available at: \url{} (DOI). Carlson, D.; Pett, P.; Peissel, N.; Bonnardeaux, C.; Suaria, G.: Sailing into an Uncertain Future - Connecting Sailors and Scientists to Monitor the Pulse of the Changing Arctic. The Journal of Ocean Technology. 2022. vol. 17, no. 3, 30-36.}} @misc{fiencke_microbiogeochemical_traits_2022, author={Fiencke, C.,Marushchak, M.,Sanders, T.,Wegner, R.,Beer, C.}, title={Microbiogeochemical Traits to Identify Nitrogen Hotspots in Permafrost Regions}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.3390/nitrogen3030031}, abstract = {Permafrost-affected tundra soils are large carbon (C) and nitrogen (N) reservoirs. However, N is largely bound in soil organic matter (SOM), and ecosystems generally have low N availability. Therefore, microbial induced N-cycling processes and N losses were considered negligible. Recent studies show that microbial N processing rates, inorganic N availability, and lateral N losses from thawing permafrost increase when vegetation cover is disturbed, resulting in reduced N uptake or increased N input from thawing permafrost. In this review, we describe currently known N hotspots, particularly bare patches in permafrost peatland or permafrost soils affected by thermokarst, and their microbiogeochemical characteristics, and present evidence for previously unrecorded N hotspots in the tundra. We summarize the current understanding of microbial N cycling processes that promote the release of the potent greenhouse gas (GHG) nitrous oxide (N2O) and the translocation of inorganic N from terrestrial into aquatic ecosystems. We suggest that certain soil characteristics and microbial traits can be used as indicators of N availability and N losses. Identifying N hotspots in permafrost soils is key to assessing the potential for N release from permafrost-affected soils under global warming, as well as the impact of increased N availability on emissions of carbon-containing GHGs.}, note = {Online available at: \url{https://doi.org/10.3390/nitrogen3030031} (DOI). Fiencke, C.; Marushchak, M.; Sanders, T.; Wegner, R.; Beer, C.: Microbiogeochemical Traits to Identify Nitrogen Hotspots in Permafrost Regions. Nitrogen. 2022. vol. 3, no. 3, 458-501. DOI: 10.3390/nitrogen3030031}} @misc{vandam_benthic_alkalinity_2022, author={Van Dam, B.,Lehmann, N.,Zeller, M.,Neumann, A.,Pröfrock, D.,Lipka, M.,Thomas, H.,Böttcher, M.}, title={Benthic alkalinity fluxes from coastal sediments of the Baltic and North seas: comparing approaches and identifying knowledge gaps}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-19-3775-2022}, abstract = {Benthic alkalinity production is often suggested as a major driver of net carbon sequestration in continental shelf ecosystems. However, information on and direct measurements of benthic alkalinity fluxes are limited and are especially challenging when biological and dynamic physical forcing causes surficial sediments to be vigorously irrigated. To address this shortcoming, we quantified net sediment–water exchange of alkalinity using a suite of complementary methods, including (1) 224Ra budgeting, (2) incubations with 224Ra and Br− as tracers, and (3) numerical modeling of porewater profiles. We choose a set of sites in the shallow southern North Sea and western Baltic Sea, allowing us to incorporate frequently occurring sediment classes ranging from coarse sands to muds and sediment–water interfaces ranging from biologically irrigated and advective to diffusive into the investigations. Sediment–water irrigation rates in the southern North Sea were approximately twice as high as previously estimated for the region, in part due to measured porewater 224Ra activities higher than previously assumed. Net alkalinity fluxes in the Baltic Sea were relatively low, ranging from an uptake of −35 to a release of 53 , and in the North Sea they were from 1 to 34 . Lower-than-expected apparent nitrate consumption (potential denitrification), across all sites, is one explanation for our small net alkalinity fluxes measured. Carbonate mineral dissolution and potentially precipitation, as well as sulfide re-oxidation, also appear to play important roles in shaping net sediment–water fluxes at locations in the North Sea and Baltic Sea.}, note = {Online available at: \url{https://doi.org/10.5194/bg-19-3775-2022} (DOI). Van Dam, B.; Lehmann, N.; Zeller, M.; Neumann, A.; Pröfrock, D.; Lipka, M.; Thomas, H.; Böttcher, M.: Benthic alkalinity fluxes from coastal sediments of the Baltic and North seas: comparing approaches and identifying knowledge gaps. Biogeosciences. 2022. vol. 19, no. 16, 3775-3789. DOI: 10.5194/bg-19-3775-2022}} @misc{vanoostende_correction_of_2022, author={van Oostende, M.,Hieronymi, M.,Krasemann, H.,Baschek, B.,Röttgers, R.}, title={Correction of inter-mission inconsistencies in merged ocean colour satellite data}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.3389/frsen.2022.882418}, abstract = {Consistency in a time series of ocean colour satellite data is essential when determining long-term trends and statistics in Essential Climate Variables. For such a long time series, it is necessary to merge ocean colour data sets from different sensors due to the finite life span of the satellites. Although bias corrections have been performed on merged data set products, significant inconsistencies between missions remain. These inconsistencies appear as sudden steps in the time series of these products when a satellite mission is launched into- or removed from orbit. This inter-mission inconsistency is not caused by poor correction of sensor sensitivities but by differences in the ability of a sensor to observe certain waters. This study, based on a data set compiled by the ‘Ocean Colour Climate Change Initiative’ project (OC-CCI), shows that coastal waters, high latitudes, and areas subject to changing cloud cover are most affected by coverage variability between missions. The “Temporal Gap Detection Method” is introduced, which temporally homogenises the observations per-pixel of the time series and consequently minimises the magnitude of the inter-mission inconsistencies. The method presented is suitable to be transferred to other merged satellite-derived data sets that exhibit inconsistencies due to changes in coverage over time. The results provide insights into the correct interpretation of any merged ocean colour time series.}, note = {Online available at: \url{https://doi.org/10.3389/frsen.2022.882418} (DOI). van Oostende, M.; Hieronymi, M.; Krasemann, H.; Baschek, B.; Röttgers, R.: Correction of inter-mission inconsistencies in merged ocean colour satellite data. Frontiers in Remote Sensing. 2022. vol. 3, 882418. DOI: 10.3389/frsen.2022.882418}} @misc{marshall_the_angola_2022, author={Marshall, T.,Granger, J.,Casciotti, K.,Dähnke, K.,Emeis, K.,Marconi, D.,McIlvin, M.,Noble, A.,Saito, M.,Sigman, D.,Fawcett, S.}, title={The Angola Gyre is a hotspot of dinitrogen fixation in the South Atlantic Ocean}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.1038/s43247-022-00474-x}, abstract = {Biological dinitrogen fixation is the major source of new nitrogen to marine systems and thus essential to the ocean’s biological pump. Constraining the distribution and global rate of dinitrogen fixation has proven challenging owing largely to uncertainty surrounding the controls thereon. Existing South Atlantic dinitrogen fixation rate estimates vary five-fold, with models attributing most dinitrogen fixation to the western basin. From hydrographic properties and nitrate isotope ratios, we show that the Angola Gyre in the eastern tropical South Atlantic supports the fixation of 1.4–5.4 Tg N.a−1, 28-108% of the existing (highly uncertain) estimates for the basin. Our observations contradict model diagnoses, revealing a substantial input of newly-fixed nitrogen to the tropical eastern basin and no dinitrogen fixation west of 7.5˚W. We propose that dinitrogen fixation in the South Atlantic occurs in hotspots controlled by the overlapping biogeography of excess phosphorus relative to nitrogen and bioavailable iron from margin sediments. Similar conditions may promote dinitrogen fixation in analogous ocean regions. Our analysis suggests that local iron availability causes the phosphorus-driven coupling of oceanic dinitrogen fixation to nitrogen loss to vary on a regional basis.}, note = {Online available at: \url{https://doi.org/10.1038/s43247-022-00474-x} (DOI). Marshall, T.; Granger, J.; Casciotti, K.; Dähnke, K.; Emeis, K.; Marconi, D.; McIlvin, M.; Noble, A.; Saito, M.; Sigman, D.; Fawcett, S.: The Angola Gyre is a hotspot of dinitrogen fixation in the South Atlantic Ocean. Communications Earth & Environment. 2022. vol. 3, 151. DOI: 10.1038/s43247-022-00474-x}} @misc{tian_a_nitrate_2022, author={Tian, S.,Gaye, B.,Tang, J.,Luo, Y.,Li, W.,Lahajnar, N.,Dähnke, K.,Sanders, T.,Xiong, T.,Zhai, W.,Emeis, K.-C.}, title={A nitrate budget of the Bohai Sea based on an isotope mass balance model}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-19-2397-2022}, abstract = {The Bohai Sea (BHS) is a semi-closed marginal sea impacted by one of the most populated areas of China. The supply of nutrients, markedly that of reactive nitrogen, via fluvial and atmospheric transport has strongly increased in parallel with the growing population. Therefore, it is crucial to quantify the reactive nitrogen input to the BHS and understand the processes and determine the quantities of nitrogen eliminated in and exported from the BHS. The nitrogen budget and in particular the internal sources and sinks of nitrate were constrained by using a mass-based and dual stable isotope approach based on δ15N and δ18O of nitrate (NO). Samples of water, suspended matter, and sediments were taken in the BHS in spring (March and April) and summer (July and August) 2018. The Yellow River (YR) was sampled in May and July to November, and Daliao River, Hai River, Luan River, and Xiaoqing River were sampled in November of 2018. In addition to nutrient, particulate organic carbon, and nitrogen concentrations, the dual isotopes of nitrate (δ15N and δ18O), δ15N of suspended matters, and sediments were determined. Based on the available mass fluxes and isotope data an updated nitrogen budget is proposed. Compared to previous estimates, it is more complete and includes the impact of interior cycling (nitrification) on the nitrate pool. The main nitrate sources are rivers contributing 19.2 %–25.6 % and the combined terrestrial runoff (including submarine fresh groundwater discharge of nitrate) accounting for 27.8 %–37.1 % of the nitrate input to the BHS, while atmospheric input contributes 6.9 %–22.2 % to total nitrate. An unusually active interior nitrogen cycling contributes 40.7 %–65.3 % to total nitrate via nitrification. Nitrogen is mainly trapped in the BHS and mainly removed by sedimentation (70.4 %–77.8 %), and only very little is exported to the Yellow Sea (YS) (only 1.8 %–2.4 %). At present denitrification is active in the sediments and removes 20.4 %–27.2 % of nitrate from the pool. However, a further eutrophication of the BHS could induce water column hypoxia and denitrification, as is increasingly observed in other marginal seas and seasonally off river mouths.}, note = {Online available at: \url{https://doi.org/10.5194/bg-19-2397-2022} (DOI). Tian, S.; Gaye, B.; Tang, J.; Luo, Y.; Li, W.; Lahajnar, N.; Dähnke, K.; Sanders, T.; Xiong, T.; Zhai, W.; Emeis, K.: A nitrate budget of the Bohai Sea based on an isotope mass balance model. Biogeosciences. 2022. vol. 19, no. 9, 2397-2415. DOI: 10.5194/bg-19-2397-2022}} @misc{reeder_high_diazotrophic_2022, author={Reeder, C.,Arevalo-Martinez, D.,Carreres-Calabuig, J.,Sanders, T.,Posth, N.,Löscher, C.}, title={High Diazotrophic Diversity but Low N2 Fixation Activity in the Northern Benguela Upwelling System Confirming the Enigma of Nitrogen Fixation in Oxygen Minimum Zone Waters}, year={2022}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2022.868261}, abstract = {Oxygen minimum zones (OMZs) have been suggested as a suitable niche for the oxygen-sensitive process of biological fixation of dinitrogen (N2) gas. However, most N2 fixation rates reported from such waters are low. This low N2 fixation activity has been proposed to result from the unusual community of N2 fixers, in which cyanobacteria were typically underrepresented. The Northern Benguela Upwelling System (North BUS) is part of one of the most productive marine ecosystems and hosts a well-developed OMZ. Although previous observations indicated low to absent N2 fixation rates, the community composition of diazotrophs needed to understand the North BUS has not been described. Here, we present a first detailed analysis of the diazotrophic diversity in the North BUS OMZ and the Angola tropical zone (ATZ), based on genetic data and isotope speciation. Consistent with a previous study, we detected a slight N deficit in the OMZ, but isotope data did not indicate any active or past N2 fixation. The diazotroph community in the North BUS was dominated by non-cyanobacterial microbes clustering with members of gamma-proteobacteria, as is typical for other OMZ regions. However, we found a strikingly high diversity of Cluster III diazotrophs not yet described in other OMZs. In contrast to previous observations, we could also identify cyanobacteria of the clades Trichodesmium sp., UCYN-A and Cyanothece sp., in surface waters connected to or above the OMZ, which were potentially active as shown by the presence of genes and transcripts of the key functional marker gene for N2 fixation, nifH. While the detection of diazotrophs and the absence of active N2 fixation (based on isotopic speciation) are consistent with other OMZ observations, the detected regional variation in the diversity and presence of cyanobacteria indicate that we still are far from understanding the role of diazotrophs in OMZs, which, however, is relevant for understanding the N cycle in OMZ waters, as well for predicting the future development of OMZ biogeochemistry in a changing ocean.}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2022.868261} (DOI). Reeder, C.; Arevalo-Martinez, D.; Carreres-Calabuig, J.; Sanders, T.; Posth, N.; Löscher, C.: High Diazotrophic Diversity but Low N2 Fixation Activity in the Northern Benguela Upwelling System Confirming the Enigma of Nitrogen Fixation in Oxygen Minimum Zone Waters. Frontiers in Marine Science. 2022. vol. 9, 868261. DOI: 10.3389/fmars.2022.868261}} @misc{vandewolfshaar_sensitivity_of_2021, author={van de Wolfshaar, K.,Daewel, U.,Hjøllo, S.,Troost, T.,Kreus, M.,Pätsch, J.,Ji, R.,Maar, M.}, title={Sensitivity of the fish community to different prey fields and importance of spatial-seasonal patterns}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.3354/meps13885}, abstract = {Different fish species and life stages depend not only on food abundance, but also on the size of planktonic prey, and (mis-)matches in time and space with suitable prey may influence the growth and survival of fish during their lifetime. We explored the sensitivity of a fish community to spatial-temporal differences in plankton prey fields. Data from 5 different lower trophic level models in the North Sea (Delft3D-WAQ, ECOHAM, ECOSMO, HBM-ERGOM and NORWECOM) were used to force the food web model OSMOSE which simulates spatially and temporally explicit higher trophic level fish dynamics. The estimated fish biomass levels were clearly and positively linked to zooplankton biomass, and sensitivity studies varying zooplankton biomass revealed that spatial and temporal variation in zooplankton drives the differences in absolute fish biomass. More zooplankton size bins resulted in less fish biomass due to size-based foraging constraints (i.e. a smaller proportion of bins falls within the prey size range of a fish, resulting in a decrease in available food). Nevertheless, we found a consistent response across models in the relative biomass contribution and spatial patterns of selected fish groups, indicating low sensitivity of the composition of the simulated fish community to the zooplankton input. The robustness of the outcome will aid model acceptance and implementation into management action. Relative, not absolute, changes in primary and secondary production may therefore be used to study the effects of management scenarios on fish communities.}, note = {Online available at: \url{https://doi.org/10.3354/meps13885} (DOI). van de Wolfshaar, K.; Daewel, U.; Hjøllo, S.; Troost, T.; Kreus, M.; Pätsch, J.; Ji, R.; Maar, M.: Sensitivity of the fish community to different prey fields and importance of spatial-seasonal patterns. Marine Ecology Progress Series. 2021. vol. 680, 79-95. DOI: 10.3354/meps13885}} @misc{vandam_calcificationdriven_co2_2021, author={Van Dam, B.,Zeller, M.,Lopes, C.,Smyth, A.,Böttcher, M.,Osburn, C.,Zimmerman, T.,Pröfrock, D.,Fourqurean, J.,Thomas, H.}, title={Calcification-driven CO2 emissions exceed “Blue Carbon” sequestration in a carbonate seagrass meadow}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1126/sciadv.abj1372}, abstract = {Long-term “Blue Carbon” burial in seagrass meadows is complicated by other carbon and alkalinity exchanges that shape net carbon sequestration. We measured a suite of such processes, including denitrification, sulfur, and inorganic carbon cycling, and assessed their impact on air-water CO2 exchange in a typical seagrass meadow underlain by carbonate sediments. Eddy covariance measurements reveal a consistent source of CO2 to the atmosphere at an average rate of 610 ± 990 μmol m−2 hour−1 during our study and 700 ± 660 μmol m−2 hour−1 (6.1 mol m−2 year−1) over an annual cycle. Net alkalinity consumption by ecosystem calcification explains >95% of the observed CO2 emissions, far exceeding organic carbon burial and anaerobic alkalinity generation. We argue that the net carbon sequestration potential of seagrass meadows may be overestimated if calcification-induced CO2 emissions are not accounted for, especially in regions where calcification rates exceed net primary production and burial.}, note = {Online available at: \url{https://doi.org/10.1126/sciadv.abj1372} (DOI). Van Dam, B.; Zeller, M.; Lopes, C.; Smyth, A.; Böttcher, M.; Osburn, C.; Zimmerman, T.; Pröfrock, D.; Fourqurean, J.; Thomas, H.: Calcification-driven CO2 emissions exceed “Blue Carbon” sequestration in a carbonate seagrass meadow. Science Advances. 2021. vol. 7, no. 51, eabj1372. DOI: 10.1126/sciadv.abj1372}} @misc{rutherford_a_modelling_2021, author={Rutherford, K.,Fennel, K.,Atamanchuk, D.,Wallace, D.,Thomas, H.}, title={A modelling study of temporal and spatial pCO2 variability on the biologically active and temperature-dominated Scotian Shelf}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-18-6271-2021}, abstract = {Continental shelves are thought to be affected disproportionately by climate change and are a large contributor to global air–sea carbon dioxide (CO2) fluxes. It is often reported that low-latitude shelves tend to act as net sources of CO2, whereas mid- and high-latitude shelves act as net sinks. Here, we combine a high-resolution regional model with surface water time series and repeat transect observations from the Scotian Shelf, a mid-latitude region in the northwest North Atlantic, to determine what processes are driving the temporal and spatial variability of partial pressure of CO2 (pCO2) on a seasonal scale. In contrast to the global trend, the Scotian Shelf acts as a net source. Surface pCO2 undergoes a strong seasonal cycle with an amplitude of ∼ 200–250 µatm. These changes are associated with both a strong biological drawdown of dissolved inorganic carbon (DIC) in spring (corresponding to a decrease in pCO2 of 100–200 µatm) and pronounced effects of temperature, which ranges from 0 ∘C in the winter to near 20 ∘C in the summer, resulting in an increase in pCO2 of ∼ 200–250 µatm. Throughout the summer, events with low surface water pCO2 occur associated with coastal upwelling. This effect of upwelling on pCO2 is also in contrast to the general assumption that upwelling increases surface pCO2 by delivering DIC-enriched water to the surface. Aside from these localized events, pCO2 is relatively uniform across the shelf. Our model agrees with regional observations, reproduces seasonal patterns of pCO2, and simulates annual outgassing of CO2 from the ocean of  mol C m−2 yr−1 for the Scotian Shelf, net uptake of CO2 by the ocean of  mol C m−2 yr−1 for the Gulf of Maine, and uptake by the ocean of  mol C m−2 yr−1 for the Grand Banks.}, note = {Online available at: \url{https://doi.org/10.5194/bg-18-6271-2021} (DOI). Rutherford, K.; Fennel, K.; Atamanchuk, D.; Wallace, D.; Thomas, H.: A modelling study of temporal and spatial pCO2 variability on the biologically active and temperature-dominated Scotian Shelf. Biogeosciences. 2021. vol. 18, no. 23, 6271-6286. DOI: 10.5194/bg-18-6271-2021}} @misc{duke_seasonal_marine_2021, author={Duke, P.,Else, B.,Jones, S.,Marriot, S.,Ahmed, M.,Nandan, V.,Butterworth, B.,Gonski, S.,Dewey, R.,Sastri, A.,Miller, L.,Simpson, K.,Thomas, H.}, title={Seasonal marine carbon system processes in an Arctic coastal landfast sea ice environment observed with an innovative underwater sensor platform}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1525/elementa.2021.00103}, abstract = {Studying carbon dioxide in the ocean helps to understand how the ocean will be impacted by climate change and respond to increasing fossil fuel emissions. The marine carbonate system is not well characterized in the Arctic, where challenging logistics and extreme conditions limit observations of atmospheric CO2 flux and ocean acidification. Here, we present a high-resolution marine carbon system data set covering the complete cycle of sea-ice growth and melt in an Arctic estuary (Nunavut, Canada). This data set was collected through three consecutive yearlong deployments of sensors for pH and partial pressure of CO2 in seawater (pCO2sw) on a cabled underwater observatory. The sensors were remarkably stable compared to discrete samples: While corrections for offsets were required in some instances, we did not observe significant drift over the deployment periods. Our observations revealed a strong seasonality in this marine carbon system. Prior to sea-ice formation, air–sea gas exchange and respiration were the dominant processes, leading to increasing pCO2sw and reduced aragonite saturation state (ΩAr). During sea-ice growth, water column respiration and brine rejection (possibly enriched in dissolved inorganic carbon, relative to alkalinity, due to ikaite precipitation in sea ice) drove pCO2sw to supersaturation and lowered ΩAr to < 1. Shortly after polar sunrise, the ecosystem became net autotrophic, returning pCO2sw to undersaturation. The biological community responsible for this early switch to autotrophy (well before ice algae or phytoplankton blooms) requires further investigation. After sea-ice melt initiated, an under-ice phytoplankton bloom strongly reduced aqueous carbon (chlorophyll-a max of 2.4 µg L–1), returning ΩAr to > 1 after 4.5 months of undersaturation. Based on simple extrapolations of anthropogenic carbon inventories, we suspect that this seasonal undersaturation would not have occurred naturally. At ice breakup, the sensor platform recorded low pCO2sw (230 µatm), suggesting a strong CO2 sink during the open water season.}, note = {Online available at: \url{https://doi.org/10.1525/elementa.2021.00103} (DOI). Duke, P.; Else, B.; Jones, S.; Marriot, S.; Ahmed, M.; Nandan, V.; Butterworth, B.; Gonski, S.; Dewey, R.; Sastri, A.; Miller, L.; Simpson, K.; Thomas, H.: Seasonal marine carbon system processes in an Arctic coastal landfast sea ice environment observed with an innovative underwater sensor platform. Elementa: Science of the Anthropocene. 2021. vol. 9, no. 1, 00103. DOI: 10.1525/elementa.2021.00103}} @misc{jiao_correcting_a_2021, author={Jiao, N.,Liu, J.,Edwards, B.,Lv, Z.,Cai, R.,Liu, Y.,Xiao, X.,Wang, J.,Jiao, F.,Wang, R.,Huang, X.,Guo, B.,Sun, J.,Zhang, R.,Zhang, Y.,Tang, K.,Zheng, Q.,Azam, F.,Batt, J.,Cai, W.-J.,He, C.,Herndl, G.J.,Hill, P.,Hutchins, D.,LaRoche, J.,Lewis, M.,MacIntyre, H.,Polimene, L.,Robinson, C.,Shi, Q.,Suttle, C.A.,Thomas, H.,Wallace, D.,Legendre, L.}, title={Correcting a major error in assessing organic carbon pollution in natural waters}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1126/sciadv.abc7318}, abstract = {Microbial degradation of dissolved organic carbon (DOC) in aquatic environments can cause oxygen depletion, water acidification, and CO2 emissions. These problems are caused by labile DOC (LDOC) and not refractory DOC (RDOC) that resists degradation and is thus a carbon sink. For nearly a century, chemical oxygen demand (COD) has been widely used for assessment of organic pollution in aquatic systems. Here, we show through a multicountry survey and experimental studies that COD is not an appropriate proxy of microbial degradability of organic matter because it oxidizes both LDOC and RDOC, and the latter contributes up to 90% of DOC in high-latitude forested areas. Hence, COD measurements do not provide appropriate scientific information on organic pollution in natural waters and can mislead environmental policies. We propose the replacement of the COD method with an optode-based biological oxygen demand method to accurately and efficiently assess organic pollution in natural aquatic environments.}, note = {Online available at: \url{https://doi.org/10.1126/sciadv.abc7318} (DOI). Jiao, N.; Liu, J.; Edwards, B.; Lv, Z.; Cai, R.; Liu, Y.; Xiao, X.; Wang, J.; Jiao, F.; Wang, R.; Huang, X.; Guo, B.; Sun, J.; Zhang, R.; Zhang, Y.; Tang, K.; Zheng, Q.; Azam, F.; Batt, J.; Cai, W.; He, C.; Herndl, G.; Hill, P.; Hutchins, D.; LaRoche, J.; Lewis, M.; MacIntyre, H.; Polimene, L.; Robinson, C.; Shi, Q.; Suttle, C.; Thomas, H.; Wallace, D.; Legendre, L.: Correcting a major error in assessing organic carbon pollution in natural waters. Science Advances. 2021. vol. 7, no. 16, eabc7318. DOI: 10.1126/sciadv.abc7318}} @misc{zagarese_patterns_of_2021, author={Zagarese, H.,de los Ángeles González Sagrario, M.,Wolf-Gladrow, D.,Nõges, P.,Nõges, T.,Kangur, K.,Matsuzaki, S.,Kohzu, A.,Vanni, M.,Ozkundakci, D.,Echaniz, S.,Vignatti, A.,Grosman, F.,Sanzano, P.,Van Dam, B.,Knoll, L.}, title={Patterns of CO2 concentration and inorganic carbon limitation of phytoplankton biomass in agriculturally eutrophic lakes}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.watres.2020.116715}, abstract = {Lake eutrophication is a pervasive problem globally, particularly serious in agricultural and densely populated areas. Whenever nutrients nitrogen and phosphorus do not limit phytoplankton growth directly, high growth rates will rapidly lead to biomass increases causing self-shading and light-limitation, and eventually CO2 depletion. The paradigm of phytoplankton limitation by nutrients and light is so pervasively established, that the lack of nutrient limitation is ordinarily interpreted as sufficient evidence for the condition of light limitation, without considering the possibility of limitation by inorganic carbon. Here, we firstly evaluated how frequently CO2 undersaturation occurs in a set of eutrophic lakes in the Pampa plains. Our results confirm that conditions of CO2 undersaturation develop much more frequently (yearly 34%, summer 44%) in these agriculturally impacted lakes than in deep, temperate lakes in forested watersheds. Secondly, we used Generalized Additive Models to fit trends in CO2 concentration considering three drivers: total incident irradiance, chlorophyll a concentration, and lake depth; in eight multi-year datasets from eutrophic lakes from Europe, North and South America, Asia and New Zealand. CO2 depletion was more often observed at high irradiance levels, and shallow water. CO2 depletion also occurred at high chlorophyll concentration. Finally, we identified occurrences of light- and carbon-limitation at the whole-lake scale. The different responses of chlorophyll a and}, note = {Online available at: \url{https://doi.org/10.1016/j.watres.2020.116715} (DOI). Zagarese, H.; de los Ángeles González Sagrario, M.; Wolf-Gladrow, D.; Nõges, P.; Nõges, T.; Kangur, K.; Matsuzaki, S.; Kohzu, A.; Vanni, M.; Ozkundakci, D.; Echaniz, S.; Vignatti, A.; Grosman, F.; Sanzano, P.; Van Dam, B.; Knoll, L.: Patterns of CO2 concentration and inorganic carbon limitation of phytoplankton biomass in agriculturally eutrophic lakes. Water Research. 2021. vol. 190, 116715. DOI: 10.1016/j.watres.2020.116715}} @misc{vlasenko_simulation_of_2021, author={Vlasenko, A.,Matthias, V.,Callies, U.}, title={Simulation of chemical transport model estimates by means of a neural network using meteorological data}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.atmosenv.2021.118236}, abstract = {Chemical substances of either anthropogenic or natural origin affect air quality and, as a consequence, also the health of the population. Therefore, there is a high demand for reliable air quality scenarios that can support possible management decisions. However, generating long term assessments of air quality assuming different emission scenarios is still a great challenge when using detailed atmospheric chemistry models. In this study, we test machine learning technique based on neural networks (NN) to emulate process-oriented modeling outcomes. A successfully calibrated NN might estimate concentrations of chemical substances in the air several orders faster than the original model and with reasonably small errors. We designed a simple recurrent 3-layer NN to reproduce daily mean concentrations of NO2, SO2 and C2H6 over Europe as simulated by the Community Multiscale Air Quality model (CMAQ). The general structure of the NN can be shown to approximate a continuity equation. Inputs of the network are daily mean meteorological state variables, taken from the climate model COSMO-CLM. The proposed NN emulates CMAQ outputs with an error not exceeding the difference between CMAQ and other known chemical transport models.}, note = {Online available at: \url{https://doi.org/10.1016/j.atmosenv.2021.118236} (DOI). Vlasenko, A.; Matthias, V.; Callies, U.: Simulation of chemical transport model estimates by means of a neural network using meteorological data. Atmospheric Environment. 2021. vol. 254, 118236. DOI: 10.1016/j.atmosenv.2021.118236}} @misc{vallaeys_understanding_the_2021, author={Vallaeys, V.,Lambrechts, J.,Delandmeter, P.,Pätsch, J.,Spitzy, A.,Hanert, E.,Deleersnijder, E.}, title={Understanding the circulation in the deep, micro-tidal and strongly stratified Congo River estuary}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.ocemod.2021.101890}, abstract = {The Congo River estuary is characterised by a deep canyon that connects the river to the deep ocean by cutting through the continental shelf. Its estuary is influenced by high river discharge and micro-tidal conditions, with a large depth and limited vertical mixing. This restricts the supply of oxygen from the surface waters to the more saline bottom waters, leading to hypoxic and anoxic zones. We study the dynamics of the Congo River estuary by applying the multi-scale baroclinic coastal ocean model SLIM 3D (www.slim-ocean.be) to this topographically challenging environment. By allowing a high degree of flexibility in the representation of both the complex geometry and the strong stratification, SLIM 3D is able to simulate riverine, tidal and gravitational processes that drive the estuarine circulation. Model results compare favourably with in-situ data in the estuary, suggesting that the exchange flow is correctly simulated. The latter is characterised by a two-layer dynamics. The combination of the large river discharge, the strong stratification and the large depth results in a moderate freshwater Froude number and a very small mixing number. It makes the Congo River an outlier in state-of-the-art estuarine classifications, closer to fjords than salt wedge estuaries. Furthermore, using the age as a diagnosis sheds light on the spatial variability of the estuarine waters ventilation. Local maximum of renewing water age located just below the pycnocline is exceeded by old dense oceanic waters which stagnate at the bottom of the canyon for more than two months due to the small vertical mixing. It helps explain the hypoxic and anoxic conditions observed at the bottom of the submarine canyon.}, note = {Online available at: \url{https://doi.org/10.1016/j.ocemod.2021.101890} (DOI). Vallaeys, V.; Lambrechts, J.; Delandmeter, P.; Pätsch, J.; Spitzy, A.; Hanert, E.; Deleersnijder, E.: Understanding the circulation in the deep, micro-tidal and strongly stratified Congo River estuary. Ocean Modelling. 2021. vol. 167, 101890. DOI: 10.1016/j.ocemod.2021.101890}} @misc{ldmann_acoustic_backscatter_2021, author={Lüdmann, T.,Saitz, M.,Metzing, J.,Emeis, K.}, title={Acoustic backscatter analysis of ground-fishing activity in the German North Sea sector}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.csr.2020.104292}, abstract = {The physical impact of demersal fishing was studied in three different areas of the German North Sea sector by use of a multibeam echosounder. The areas represent typical shallow seas siliciclastic habitats in variable distance to the coastline. Their seabed substrate is dominated by coarse silt close to the shore and by fine sand in the most distal area on the Dogger Bank. The study documents the utility of the multibeam as a suitable tool to map large seafloor areas, as well as to quantify and qualify the footprints of the fishing groundgear. Besides the depth and amplitude information, the multibeam data allows the analysis of the incidence angle-dependent variation of the backscatter signal that provides additional information on the seabed impedance, roughness, volume scatter and substrate type. Two main types of destructive seafloor pattern were observed in the three areas. The dominant type are pairs of parallel furrows exhibiting widths of 6–9 m and depths of 2–6 cm and is related to beam trawling. Separation distance of the pair furrows is 16–23 m. The second type are pairs of narrow furrows (3–4 m) with much larger separation distance of 110–120 m. They are attributed to otter board trawling.,A comparison of their mechanical ramification shows that the fishing gear incises the seafloor and modifies seafloor structures and properties. Our investigation documents that beam trawling has the greatest physical impact and exhibits the highest furrow density in the three study areas. The created furrows can persist for at least 4 months in a substrate of very fine sand. Depending on the hydrodynamic regime, the furrows can be later refilled by finer sediments, or levelled out by storm wave-induced turbulence reaching the seafloor. The hydrofoils used in otter trawl to spread the net likewise incise the seafloor, but the furrows are much narrower. However, the ground rope of the net towed between the boards scratches the seafloor and levels the microscale topography along track widths of ca. 100 m.}, note = {Online available at: \url{https://doi.org/10.1016/j.csr.2020.104292} (DOI). Lüdmann, T.; Saitz, M.; Metzing, J.; Emeis, K.: Acoustic backscatter analysis of ground-fishing activity in the German North Sea sector. Continental Shelf Research. 2021. vol. 212, 104292. DOI: 10.1016/j.csr.2020.104292}} @misc{weitere_disentangling_multiple_2021, author={Weitere, M.,Altenburger, R.,Anlanger, C.,Baborowski, M.,Bärlund, I.,Beckers, L.-M.,Borchardt, D.,Brack, W.,Brase, L.,Busch, W.,Chatzinotas, A.,Deutschmann, B.,Eligehausen, J.,Frank, K.,Graeber, D.,Griebler, C.,Hagemann, J.,Herzsprung, P.,Hollert, H.,Inostroza, P.A.,Jäger, C.G.,Kallies, R.,Kamjunke, N.,Karrasch, B.,Kaschuba, S.,Kaus, A.,Klauer, B.,Knöller, K.,Koschorreck, M.,Krauss, M.,Kunz, J.V.,Kurz, M.J.,Liess, M.,Mages, M.,Müller, C.,Muschket, M.,Musolff, A.,Norf, H.,Pöhlein, F.,Reiber, L.,Risse-Buhl, U.,Schramm, K.-W.,Schmitt-Jansen, M.,Schmitz, M.,Strachauer, U.,von Tümpling, W.,Weber, N.,Wild, R.,Wolf, C.,Brauns, M.}, title={Disentangling multiple chemical and non-chemical stressors in a lotic ecosystem using a longitudinal approach}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.scitotenv.2020.144324}, abstract = {Meeting ecological and water quality standards in lotic ecosystems is often failed due to multiple stressors. However, disentangling stressor effects and identifying relevant stressor-effect-relationships in complex environmental settings remain major challenges. By combining state-of-the-art methods from ecotoxicology and aquatic ecosystem analysis, we aimed here to disentangle the effects of multiple chemical and non-chemical stressors along a longitudinal land use gradient in a third-order river in Germany. We distinguished and evaluated four dominant stressor categories along this gradient: (1) Hydromorphological alterations: Flow diversity and substrate diversity correlated with the EU-Water Framework Directive based indicators for the quality element macroinvertebrates, which deteriorated at the transition from near-natural reference sites to urban sites. (2) Elevated nutrient levels and eutrophication: Low to moderate nutrient concentrations together with complete canopy cover at the reference sites correlated with low densities of benthic algae (biofilms). We found no more systematic relation of algal density with nutrient concentrations at the downstream sites, suggesting that limiting concentrations are exceeded already at moderate nutrient concentrations and reduced shading by riparian vegetation. (3) Elevated organic matter levels: Wastewater treatment plants (WWTP) and stormwater drainage systems were the primary sources of bioavailable dissolved organic carbon. Consequently, planktonic bacterial production and especially extracellular enzyme activity increased downstream of those effluents showing local peaks. (4) Micropollutants and toxicity-related stress: WWTPs were the predominant source of toxic stress, resulting in a rapid increase of the toxicity for invertebrates and algae with only one order of magnitude below the acute toxic levels. This toxicity correlates negatively with the contribution of invertebrate species being sensitive towards pesticides (SPEARpesticides index), probably contributing to the loss of biodiversity recorded in response to WWTP effluents. Our longitudinal approach highlights the potential of coordinated community efforts in supplementing established monitoring methods to tackle the complex phenomenon of multiple stress.}, note = {Online available at: \url{https://doi.org/10.1016/j.scitotenv.2020.144324} (DOI). Weitere, M.; Altenburger, R.; Anlanger, C.; Baborowski, M.; Bärlund, I.; Beckers, L.; Borchardt, D.; Brack, W.; Brase, L.; Busch, W.; Chatzinotas, A.; Deutschmann, B.; Eligehausen, J.; Frank, K.; Graeber, D.; Griebler, C.; Hagemann, J.; Herzsprung, P.; Hollert, H.; Inostroza, P.; Jäger, C.; Kallies, R.; Kamjunke, N.; Karrasch, B.; Kaschuba, S.; Kaus, A.; Klauer, B.; Knöller, K.; Koschorreck, M.; Krauss, M.; Kunz, J.; Kurz, M.; Liess, M.; Mages, M.; Müller, C.; Muschket, M.; Musolff, A.; Norf, H.; Pöhlein, F.; Reiber, L.; Risse-Buhl, U.; Schramm, K.; Schmitt-Jansen, M.; Schmitz, M.; Strachauer, U.; von Tümpling, W.; Weber, N.; Wild, R.; Wolf, C.; Brauns, M.: Disentangling multiple chemical and non-chemical stressors in a lotic ecosystem using a longitudinal approach. Science of the Total Environment. 2021. vol. 769, 144324. DOI: 10.1016/j.scitotenv.2020.144324}} @misc{francescangeli_recent_benthic_2021, author={Francescangeli, F.,Milker, Y.,Bunzel, D.,Thomas, H.,Norbisrath, M.,Schönfeld, J.,Schmiedl, G.}, title={Recent benthic foraminiferal distribution in the Elbe Estuary (North Sea, Germany): A response to environmental stressors}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.ecss.2021.107198}, abstract = {For the past 200 years, estuarine environments experienced intense and rapid environmental degradations due to human interventions. In addition, Global Changes are modifying the estuarine physiography, leading to a re-structuration of marginal marine benthic communities. The aim of this study is to document, the modern assemblage composition and the species-environment relations of benthic foraminifera upstream the Elbe Estuary (southern North Sea) and to observe what has changed since the first survey in 1981. For this purpose, a surface sampling was carried out from 22 stations along the transitional area of the Elbe Estuary. Living (rose-Bengal stained) and dead foraminiferal assemblages were analysed as well as hydrological and sedimentological parameters (such as salinity, pH, grain-size, and organic matter). Living faunas are characterized by very low densities and largely dominated by Ammonia species. Dead assemblages are more diverse and dominated by Ammonia aomoriensis, Haynesina germanica, and Cribroelphidium selseyense. Salinity and grain-size seem to be the major factors influencing foraminiferal distributions in the transitional area. Under the ongoing climate changes, future strategies will be taken to foster the application of benthic foraminifera as biomonitoring tool in the Elbe Estuary, via this baseline investigation.}, note = {Online available at: \url{https://doi.org/10.1016/j.ecss.2021.107198} (DOI). Francescangeli, F.; Milker, Y.; Bunzel, D.; Thomas, H.; Norbisrath, M.; Schönfeld, J.; Schmiedl, G.: Recent benthic foraminiferal distribution in the Elbe Estuary (North Sea, Germany): A response to environmental stressors. Estuarine, Coastal and Shelf Science. 2021. vol. 251, 107198. DOI: 10.1016/j.ecss.2021.107198}} @misc{vandam_water_temperature_2021, author={Van Dam, B.,Lopes, C.,Polsenaere, P.,Price, R.,Rutgersson, A.,Fourqurean, J.}, title={Water temperature control on CO2 flux and evaporation over a subtropical seagrass meadow revealed by atmospheric eddy covariance}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1002/lno.11620}, abstract = {Subtropical seagrass meadows play a major role in the coastal carbon cycle, but the nature of air–water CO2 exchanges over these ecosystems is still poorly understood. The complex physical forcing of air–water exchange in coastal waters challenges our ability to quantify bulk exchanges of CO2 and water (evaporation), emphasizing the need for direct measurements. We describe the first direct measurements of evaporation and CO2 flux over a calcifying seagrass meadow near Bob Allen Keys, Florida. Over the 78‐d study, CO2 emissions were 36% greater during the day than at night, and the site was a net CO2 source to the atmosphere of 0.27 ± 0.17 μmol m−2 s−1 (x̅ ± standard deviation). A quarter (23%) of the diurnal variability in CO2 flux was caused by the effect of changing water temperature on gas solubility. Furthermore, evaporation rates were ~ 10 times greater than precipitation, causing a 14% increase in salinity, a potential precursor of seagrass die‐offs. Evaporation rates were not correlated with solar radiation, but instead with air–water temperature gradient and wind shear. We also confirm the role of convective forcing on night‐time enhancement and day‐time suppression of gas transfer. At this site, temperature trends are regulated by solar heating, combined with shallow water depth and relatively consistent air temperature. Our findings indicate that evaporation and air–water CO2 exchange over shallow, tropical, and subtropical seagrass ecosystems may be fundamentally different than in submerged vegetated environments elsewhere, in part due to the complex physical forcing of coastal air–sea gas transfer.}, note = {Online available at: \url{https://doi.org/10.1002/lno.11620} (DOI). Van Dam, B.; Lopes, C.; Polsenaere, P.; Price, R.; Rutgersson, A.; Fourqurean, J.: Water temperature control on CO2 flux and evaporation over a subtropical seagrass meadow revealed by atmospheric eddy covariance. Limnology and Oceanography. 2021. vol. 66, no. 2, 510-527. DOI: 10.1002/lno.11620}} @misc{vandam_global_trends_2021, author={Van Dam, B.,Polsenaere, P.,Barreras-Apodaca, A.,Lopes, C.,Sanchez-Mejia, Z.,Tokoro, T.,Kuwae, T.,Gutierrez Loza, L.,Rutgersson, A.,Fourqurean, J.,Thomas, H.}, title={Global Trends in Air‐Water CO2 Exchange Over Seagrass Meadows Revealed by Atmospheric Eddy Covariance}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1029/2020GB006848}, abstract = {Coastal vegetated habitats like seagrass meadows can mitigate anthropogenic carbon emissions by sequestering CO2 as “blue carbon” (BC). Already, some coastal ecosystems are actively managed to enhance BC storage, with associated BC stocks included in national greenhouse gas inventories. However, the extent to which BC burial fluxes are enhanced or counteracted by other carbon fluxes, especially air‐water CO2 flux (FCO2) remains poorly understood. In this study, we synthesized all available direct FCO2 measurements over seagrass meadows made using atmospheric Eddy Covariance, across a globally‐representative range of ecotypes. Of the four sites with seasonal data coverage, two were net CO2 sources, with average FCO2 equivalent to 44 ‐ 115% of the global average BC burial rate. At the remaining sites, net CO2 uptake was 101 ‐ 888% of average BC burial. A wavelet coherence analysis demonstrated that FCO2 was most strongly related to physical factors like temperature, wind, and tides. In particular, tidal forcing was a key driver of global‐scale patterns in FCO2, likely due to a combination of lateral carbon exchange, bottom‐driven turbulence, and pore‐water pumping. Lastly, sea‐surface drag coefficients were always greater than prediction for the open ocean, supporting a universal enhancement of gas‐transfer in shallow coastal waters. Our study points to the need for a more comprehensive approach to BC assessments, considering not only organic carbon storage, but also air‐water CO2 exchange, and its complex biogeochemical and physical drivers.}, note = {Online available at: \url{https://doi.org/10.1029/2020GB006848} (DOI). Van Dam, B.; Polsenaere, P.; Barreras-Apodaca, A.; Lopes, C.; Sanchez-Mejia, Z.; Tokoro, T.; Kuwae, T.; Gutierrez Loza, L.; Rutgersson, A.; Fourqurean, J.; Thomas, H.: Global Trends in Air‐Water CO2 Exchange Over Seagrass Meadows Revealed by Atmospheric Eddy Covariance. Global Biogeochemical Cycles. 2021. vol. 35, no. 4, e2020GB006848. DOI: 10.1029/2020GB006848}} @misc{omar_detection_and_2021, author={Omar, A.M.,García-Ibáñez, M.I.,Schaap, A.,Oleynik, A.,Esposito, M.,Jeansson, E.,Loucaides, S.,Thomas, H.,Alendal, G.}, title={Detection and quantification of CO2 seepage in seawater using the stoichiometric Cseep method: Results from a recent subsea CO2 release experiment in the North Sea}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.ijggc.2021.103310}, abstract = {Carbon Capture and Storage (CCS) is a potential significant mitigation strategy to combat climate change and ocean acidification. The technology is well understood but its current implementation must be scaled up nearly by a hundredfold to become an effective tool that helps meet mitigation targets. Regulations require monitoring and verification at storage sites, and reliable monitoring strategies for detection and quantification of seepage of the stored carbon need to be developed. The Cseep method was developed for reliable determination of CO2 seepage signal in seawater by estimating and filtering out natural variations in dissolved inorganic carbon (C). In this work, we analysed data from the first-ever subsea CO2 release experiment performed in the north-western North Sea by the EU STEMM−CCS project. We successfully demonstrated the ability of the Cseep method to (i) predict natural C variations around the Goldeneye site over seasonal to interannual time scales; (ii) establish a process-based baseline C concentration with minimal variability; (iii) determine CO2 seepage detection threshold (DT) to reliably differentiate released−CO2 signal from natural variability and quantify released−CO2 dissolved in the sampled seawater. DT values were around 20 % of the natural C variations indicating high sensitivity of the method. Moreover, with the availability of DT value, the identification of released−CO2 required no pre-knowledge of seepage occurrence, but we used additional available information to assess the confidence of the results. Overall, the Cseep method features high sensitivity, automation suitability, and represents a powerful future monitoring tool both for large and confined marine areas.}, note = {Online available at: \url{https://doi.org/10.1016/j.ijggc.2021.103310} (DOI). Omar, A.; García-Ibáñez, M.; Schaap, A.; Oleynik, A.; Esposito, M.; Jeansson, E.; Loucaides, S.; Thomas, H.; Alendal, G.: Detection and quantification of CO2 seepage in seawater using the stoichiometric Cseep method: Results from a recent subsea CO2 release experiment in the North Sea. International Journal of Greenhouse Gas Control. 2021. vol. 108, 103310. DOI: 10.1016/j.ijggc.2021.103310}} @misc{neumann_macrofauna_as_2021, author={Neumann, A.,Beusekom, J.,Eisele, A.,Emeis, K.,Friedrich, J.,Kröncke, I.,Logemann, E.,Meyer, J.,Naderipour, C.,Schückel, U.,Wrede, A.,Zettler, M.}, title={Macrofauna as a major driver of bentho-pelagic exchange in the southern North Sea}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1002/lno.11748}, abstract = {The contribution of sediments to nutrient cycling of the coastal North Sea is strongly controlled by the intensity of fluxes across the sediment water interface. Pore‐water advection is one major exchange mechanism that is well described by models, as it is determined by physical parameters. In contrast, biotransport (i.e., bioirrigation, bioturbation) as the other major transport mechanism is much more complex. Observational data reflecting biotransport, from the German Bight for example, is scarce. We sampled the major sediment provinces of the German Bight repeatedly over the years from 2013 to 2019. By employing ex situ whole core incubations, we established the seasonal and spatial variability of macrofauna‐sustained benthic fluxes of oxygen and nutrients. A multivariate, partial least squares analysis identified faunal activity, in specifically bioturbation and bioirrigation, alongside temperature, as the most important drivers of oxygen and nutrient fluxes. Their combined effect explained 63% of the observed variability in oxygen fluxes, and 36–48% of variability in nutrient fluxes. Additional 10% of the observed variability of fluxes were explained by sediment type and the availability of plankton biomass. Based on our extrapolation by sediment provinces, we conclude that pore‐water advection and macrofaunal activity contributed equally to the total benthic oxygen uptake in the German Bight.}, note = {Online available at: \url{https://doi.org/10.1002/lno.11748} (DOI). Neumann, A.; Beusekom, J.; Eisele, A.; Emeis, K.; Friedrich, J.; Kröncke, I.; Logemann, E.; Meyer, J.; Naderipour, C.; Schückel, U.; Wrede, A.; Zettler, M.: Macrofauna as a major driver of bentho-pelagic exchange in the southern North Sea. Limnology and Oceanography. 2021. vol. 66, no. 6, 2203-2217. DOI: 10.1002/lno.11748}} @misc{oehler_tropical_beaches_2021, author={Oehler, T.,Ramasamy, M.,George, M.,Babu, S.,Dähnke, K.,Ankele, M.,Böttcher, M.,Santos, I.,Moosdorf, N.}, title={Tropical Beaches Attenuate Groundwater Nitrogen Pollution Flowing to the Ocean}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1021/acs.est.1c00759}, abstract = {Tropical urbanized coastal regions are hotspots for the discharge of nutrient-enriched groundwater, which can affect sensitive coastal ecosystems. Here, we investigated how a beach modifies groundwater nutrient loads in southern India (Varkala Beach), using flux measurements and stable isotopes. Fresh groundwater was highly enriched in NO3 from sewage or manure. Submarine groundwater discharge and nearshore groundwater discharge were equally important contributors to coastal NO3 fluxes with 303 mmol NO3 m–1 day–1 in submarine and 334 mmol NO3 m–1 day–1 in nearshore groundwater discharge. However, N/P ratios in nearshore groundwater discharge were up to 3 orders of magnitude greater than that in submarine groundwater, which can promote harmful algae blooms. As groundwater flowed through the beach, N/P ratios decreased toward Redfield ratios due to the removal of 30–50% of NO3 due to denitrification and production of PO4 due to mineralization of organic matter. Overall, tropical beaches can be important natural biogeochemical reactors that attenuate nitrogen pollution and modify N/P ratios in submarine groundwater discharge.}, note = {Online available at: \url{https://doi.org/10.1021/acs.est.1c00759} (DOI). Oehler, T.; Ramasamy, M.; George, M.; Babu, S.; Dähnke, K.; Ankele, M.; Böttcher, M.; Santos, I.; Moosdorf, N.: Tropical Beaches Attenuate Groundwater Nitrogen Pollution Flowing to the Ocean. Environmental Science and Technology. 2021. vol. 55, no. 12, 8432-8438. DOI: 10.1021/acs.est.1c00759}} @misc{pein_seasonal_stratification_2021, author={Pein, J.,Eisele, A.,Sanders, T.,Daewel, U.,Stanev, E.,Beusekom, J.,Staneva, J.,Schrum, C.}, title={Seasonal Stratification and Biogeochemical Turnover in the Freshwater Reach of a Partially Mixed Dredged Estuary}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2021.623714}, abstract = {The Elbe estuary is a substantially engineered tidal water body that receives high loads of organic matter from the eutrophied Elbe river. The organic matter entering the estuary at the tidal weir is dominated by diatom populations that collapse in the deepened freshwater reach. Although the estuary’s freshwater reach is considered to manifest vertically homogenous density distribution (i.e., to be well-mixed), several indicators like trapping of particulate organic matter, near-bottom oxygen depletion and ammonium accumulation suggest that the vertical exchange of organic particles and dissolved oxygen is weakened at least temporarily. To better understand the causal links between the hydrodynamics and the oxygen and nutrient cycling in the deepened freshwater reach of the Elbe estuary, we establish a three-dimensional coupled hydrodynamical-biogeochemical model. The model demonstrates good skill in simulating the variability of the physical and biogeochemical parameters in the focal area. Coupled simulations reveal that this region is a hotspot of the degradation of diatoms and organic matter transported from the shallow productive upper estuary and the tidal weir. In summer, the water column weakly stratifies when at the bathymetric jump warmer water from the shallow upper estuary spreads over the colder water of the deepened mid reaches. Enhanced thermal stratification also occurs also in the narrow port basins and channels. Model results show intensification of the particle trapping due to the thermal gradients. The stratification also reduces the oxygenation of the near-bottom region and sedimentary layer inducing oxygen depletion and accumulation of ammonium. The study highlights that the vertical resolution is important for the understanding and simulation of estuarine ecological processes, because even weak stratification impacts the cycling of nutrients via modulation of the vertical mixing of oxygen, particularly in deepened navigation channels and port areas.}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2021.623714} (DOI). Pein, J.; Eisele, A.; Sanders, T.; Daewel, U.; Stanev, E.; Beusekom, J.; Staneva, J.; Schrum, C.: Seasonal Stratification and Biogeochemical Turnover in the Freshwater Reach of a Partially Mixed Dredged Estuary. Frontiers in Marine Science. 2021. vol. 8, 623714. DOI: 10.3389/fmars.2021.623714}} @misc{callies_on_using_2021, author={Callies, U.,Kreus, M.,Petersen, W.,Voynova, Y.}, title={On Using Lagrangian Drift Simulations to Aid Interpretation of in situ Monitoring Data}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2021.666653}, abstract = {One key challenge of marine monitoring programs is to reasonably combine information from different in situ observations spread in space and time. In that context, we suggest the use of Lagrangian transport simulations extending both forward and backward in time to identify the movements of water bodies from the time they were observed to the time of their synopsis. We present examples of how synoptic maps of salinity generated by this method support the identification and tracing of river plumes in coastal regions. We also demonstrate how we can use synoptic maps to delineate different water masses in coastal margins. These examples involve quasi-continuous observations of salinity taken along ferry routes. A third application is the synchronization of measurements between fixed stations and nearby moving platforms. Both observational platforms often see the same water body, but at different times. We demonstrate how the measurements from a fixed platform can be synchronized to measurements from a moving platform by taking into account simulation-based time shifts.}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2021.666653} (DOI). Callies, U.; Kreus, M.; Petersen, W.; Voynova, Y.: On Using Lagrangian Drift Simulations to Aid Interpretation of in situ Monitoring Data. Frontiers in Marine Science. 2021. vol. 8, 666653. DOI: 10.3389/fmars.2021.666653}} @misc{bolle_no_evidence_2021, author={Bolle, L.,Hoek, R.,Pennock, I.,Poiesz, S.,van Beusekom, J.,van der Veer, H.,Witte, J.,Tulp, I.}, title={No evidence for reduced growth in resident fish species in the era of de-eutrophication in a coastal area in NW Europe}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.marenvres.2021.105364}, abstract = {Coastal areas in north-western Europe have been influenced by elevated nutrient levels starting in the 1960s. Due to efficient measures, both nitrate and phosphate levels decreased since the mid-1980s. The co-occurring declines in nutrient loadings and fish productivity are often presumed to be causally linked. We investigated whether four resident fish species (twaite shad, bull-rout, thick-lipped grey mullet and eelpout), that spend the majority of their life in the vicinity of the coast, differed in growth between the historic eutrophication period compared to the recent lower nutrient-level period. Based on Von Bertalanffy growth models of length at age, and the analysis of annual otolith increments, we investigated the difference in sex-specific growth patterns and related these to temperature, eutrophication level (Chlorophyll a), growth window and fish density. In all four species, annual otolith growth rates during the early life stages differed between the two periods, mostly resulting in larger lengths at age in the recent period. All species showed significant correlations between increment size and temperature, explaining the observed period differences. The lack of an effect of total fish biomass provided no evidence for density dependent growth. A correlation with chlorophyll was found in bull-rout, but the relationship was negative, thus not supporting the idea of growth enhanced by high nutrient levels. In conclusion, we found no evidence for reduced growth related to de-eutrophication. Our results indicate that temperature rise due to climate change had a greater impact on growth than reduced food availability due to de-eutrophication. We discuss potential consequences of growth changes for length-based indicators used in management.}, note = {Online available at: \url{https://doi.org/10.1016/j.marenvres.2021.105364} (DOI). Bolle, L.; Hoek, R.; Pennock, I.; Poiesz, S.; van Beusekom, J.; van der Veer, H.; Witte, J.; Tulp, I.: No evidence for reduced growth in resident fish species in the era of de-eutrophication in a coastal area in NW Europe. Marine Environmental Research. 2021. vol. 169, 105364. DOI: 10.1016/j.marenvres.2021.105364}} @misc{adyasari_terrestrial_nutrients_2021, author={Adyasari, D.,Waska, H.,Daehnke, K.,Oehler, T.,Pracoyo, A.,Putra, D.,Moosdorf, N.}, title={Terrestrial Nutrients and Dissolved Organic Matter Input to the Coral Reef Ecosystem via Submarine Springs}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1021/acsestwater.1c00134}, abstract = {Submarine groundwater discharge (SGD) transports terrestrial nutrients and dissolved organic matter (DOM) to the ocean. An elevated concentration of nutrients and DOM can act as stressors enhancing coral disease and mortality, but only a few studies address the impacts of groundwater-borne nutrients and DOM on coral reef ecosystems. This study quantifies and characterizes nutrients, nitrate (NO3–) stable isotopes, and DOM molecular composition of coastal groundwater discharging to the reef ecosystem via submarine springs in Lombok, Indonesia. NO3– isotopic values point to both natural (soil) and anthropogenic (wastewater and fertilizer) origins of nutrients in the coastal aquifer. Submarine springs are fed by different groundwater sources and deliver land-based NO3–, dissolved silica, phosphate, and labile DOM to the reef water column. Terrestrial nutrients and DOM undergo rapid turnover in the reef water column due to biogeochemical processes and biological uptake. Meanwhile, reef and offshore water likely act as sources of more stable, reworked DOM formulas and its mineralization product, ammonium. We observed that submarine springs consistently deliver similar nutrient loadings, creating a long-term environmental threat to coral reef sustainability. This study emphasizes the importance of understanding coastal biogeochemistry and hydrological processes in sensitive tropical ecosystems, particularly those adjacent to modified land-use watersheds.}, note = {Online available at: \url{https://doi.org/10.1021/acsestwater.1c00134} (DOI). Adyasari, D.; Waska, H.; Daehnke, K.; Oehler, T.; Pracoyo, A.; Putra, D.; Moosdorf, N.: Terrestrial Nutrients and Dissolved Organic Matter Input to the Coral Reef Ecosystem via Submarine Springs. ACS ES & T Water. 2021. vol. 1, no. 8, 1887-1900. DOI: 10.1021/acsestwater.1c00134}} @misc{vandam_overstated_potential_2021, author={Van Dam, B.,Lopes, C.,Zeller, M.,Ribas-Ribas, M.,Wang, H.,Thomas, H.}, title={Overstated Potential for Seagrass Meadows to Mitigate Coastal Ocean Acidification}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2021.729992}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2021.729992} (DOI). Van Dam, B.; Lopes, C.; Zeller, M.; Ribas-Ribas, M.; Wang, H.; Thomas, H.: Overstated Potential for Seagrass Meadows to Mitigate Coastal Ocean Acidification. Frontiers in Marine Science. 2021. vol. 8, 729992. DOI: 10.3389/fmars.2021.729992}} @misc{arlinghaus_impact_of_2021, author={Arlinghaus, P.,Zhang, W.,Wrede, A.,Schrum, C.,Neumann, A.}, title={Impact of benthos on morphodynamics from a modeling perspective}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.earscirev.2021.103803}, abstract = {Benthic organisms and their bioturbation activities have a profound effect on a multitude of sediment properties. While many studies have already explored benthic impacts at small temporal and spatial scales, little is known on how the small-scale effects accumulate and interactively guide large-scale (km-scale) morphological evolution. Here we firstly summarize the most important processes of benthos affecting sediment stability and then explore existing biomorphodynamic modeling studies both at small- and large-scales. In general, microbenthos (body size <0.1 mm) mainly stabilizes sediments while meio- (0.1–1 mm) and macrobenthos (>1 mm) may stabilize or destabilize sediments. Among all types of sediment, fine-grained fraction (silt and clay) is most sensitive to the impact of benthos. Benthic organisms have the capability to mediate sediment transport and sedimentation patterns beyond their habitats on the long-term and over a large-scale. However, so far, numerical models evaluating benthic impact are limited to explorative studies and have not reached a stage where they can be used for predictive modeling. The barriers hindering a further development of biomorphodynamic models include not only limited understanding of fundamental biological/bio-physical processes affecting morphological development and dynamic feedback loops among them but also a shortage of data for model calibration and confirmation of simulation results. On the other hand, thriving for higher model complexity does not necessarily lead to better performance. Before conducting biomorphodynamic modeling, researchers must figure out which questions can be answered in a meaningful sense with simulation results that can be compared with observations and which level of modeling complexity is sufficient for that purpose.}, note = {Online available at: \url{https://doi.org/10.1016/j.earscirev.2021.103803} (DOI). Arlinghaus, P.; Zhang, W.; Wrede, A.; Schrum, C.; Neumann, A.: Impact of benthos on morphodynamics from a modeling perspective. Earth-Science Reviews. 2021. vol. 221, 103803. DOI: 10.1016/j.earscirev.2021.103803}} @misc{zhang_quantifying_importance_2021, author={Zhang, W.,Neumann, A.,Daewel, U.,Wirtz, K.,van Beusekom, J.,Eisele, A.,Ma, M.,Schrum, C.}, title={Quantifying Importance of Macrobenthos for Benthic-Pelagic Coupling in a Temperate Coastal Shelf Sea}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.1029/2020JC016995}, abstract = {Benthic oxygen fluxes consist mostly of advective and diffusive terms. Both terms in the German Bight exhibit a prominent annual cycle but with opposite variation patterns. To understand the driving mechanisms quantitatively, a novel 3-D benthic-pelagic coupled model resolving interactions among macrobenthos, bioturbation, oxygen consumption, and carbon early diagenesis was applied to reconstruct the benthic states. Simulation results show a satisfactory agreement with field data and reveal that the benthic oxygen flux is determined by not only pelagic drivers but also by internal dynamics associated with the interaction between organic carbon and macrobenthos, and bedform morphodynamics. Variation of advective flux, characterized by summer-low and winter-high, is mainly driven by hydrodynamics and bedform morphodynamics, while variation of diffusive flux, featured by summer-high and winter-low, is a compound effect of pelagic and benthic drivers with a dominant control by macrobenthos through bioturbation. The role of bioturbation in benthic oxygen consumption is twofold: (a) on the one hand, it alters the particulate organic carbon (POC) distribution in surface sediments, thereby changing the availability of POC to oxygen consumption; (b) on the other hand, it mixes oxygen down into sediments, thereby facilitating oxygen consumption. Our results indicate that the first role prevails in sandy seafloor characterized by energetic hydrodynamics, while the second role becomes increasingly important along with a weakening of bottom currents. We found that bioturbation contributes up to 87% urn:x-wiley:21699275:media:jgrc24733:jgrc24733-math-0001 4% and 55% urn:x-wiley:21699275:media:jgrc24733:jgrc24733-math-0002 8% of the total benthic oxygen fluxes in muddy seabed and at a regional scale (the German Bight), respectively.}, note = {Online available at: \url{https://doi.org/10.1029/2020JC016995} (DOI). Zhang, W.; Neumann, A.; Daewel, U.; Wirtz, K.; van Beusekom, J.; Eisele, A.; Ma, M.; Schrum, C.: Quantifying Importance of Macrobenthos for Benthic-Pelagic Coupling in a Temperate Coastal Shelf Sea. Journal of Geophysical Research : Oceans. 2021. vol. 126, no. 10, e2020JC016995. DOI: 10.1029/2020JC016995}} @misc{rixen_oxygen_and_2021, author={Rixen, T.,Lahajnar, N.,Lamont, T.,Koppelmann, R.,Martin, B.,van Beusekom, J.,Siddiqui, C.,Pillay, K.,Meiritz, L.}, title={Oxygen and Nutrient Trapping in the Southern Benguela Upwelling System}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2021.730591}, abstract = {The Benguela Upwelling System in the southeast Atlantic Ocean is of crucial socio-economic importance due to its high productivity. However, predicting its response to global change and understanding past changes are still great challenges. Here, we compile data obtained from a research cruise and an oceanographic mooring to demonstrate that a topographically steered nutrient trapping zone develops in a narrow belt along the coast during the main upwelling season in austral spring and summer in the southern Benguela Upwelling System. High nutrient concentrations within this zone increase the impact of upwelling on the productivity of the southern Benguela Upwelling System, but the efficient nutrient trapping operates at the expense of decreasing oxygen concentrations. This enhances the probability of anoxic events emerging toward the end of the upwelling season. However, at the end of the upwelling season, the front that separates the coastally trapped waters from open shelf waters weakens or even collapses due to upwelling cessation and the reversing current regime. This, in addition to a stronger vertical mixing caused by winter cooling, fosters the ventilation of the nutrient trapping zone, which reestablishes during the following upwelling season. The postulated intensification of upwelling and changes in the ecosystem structure in response to global warming seem to reduce the nutrient trapping efficiency by increasing offshore advection of surface waters and plankton blooms. The intensified upwelling and resulting lower biological oxygen consumption appears to mask the expected impacts of global warming on the oxygen minimum zone (OMZ) in the southern Benguela Upwelling System. In contrast to other OMZs, including those in northern Benguela Upwelling Systems, the OMZ in the southern Benguela Upwelling System reveals so far no detectable long-term decrease in oxygen. Thus, the nutrient trapping efficiency seems to be a critical feature mitigating global change impacts on the southern Benguela Upwelling System. Since it is topographically steered, regional impacts on the nutrient trapping efficiency appear also to explain varying responses of upwelling systems to global change as the comparison between southern and northern Benguela Upwelling System shows. This emphasizes the need for further and more comparable studies in order to better understand the response of Eastern Boundary Upwelling Systems and their ecosystem services to global change.}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2021.730591} (DOI). Rixen, T.; Lahajnar, N.; Lamont, T.; Koppelmann, R.; Martin, B.; van Beusekom, J.; Siddiqui, C.; Pillay, K.; Meiritz, L.: Oxygen and Nutrient Trapping in the Southern Benguela Upwelling System. Frontiers in Marine Science. 2021. vol. 8, 730591. DOI: 10.3389/fmars.2021.730591}} @misc{callies_sensitive_dependence_2021, author={Callies, U.}, title={Sensitive dependence of trajectories on tracer seeding positions – coherent structures in German Bight backward drift simulations}, year={2021}, howpublished = {journal article}, doi = {https://doi.org/10.5194/os-17-527-2021}, abstract = {Backward drift simulations can aid the interpretation of in situ monitoring data. Some trajectories, however, are sensitive to even small changes of the tracer release position. A corresponding spread of backward simulations implies convergence in the forward passage of time. Such uncertainty about the probed water body's origin complicates the interpretation of measurements. This study examines surface drift simulations in the German Bight (North Sea). Lines across which drift behaviour changes non-smoothly are obtained as ridges in the fields of the finite-time Lyapunov exponent (FTLE), a parameter used in dynamical systems theory to identify Lagrangian coherent structures (LCS). Results are shown to closely resemble those obtained considering a) two-particle relative dispersion and b) the average divergence of Eulerian velocities that tracers experience. Structures observed in simulated sea surface temperature and salinity further corroborate the FTLE results.}, note = {Online available at: \url{https://doi.org/10.5194/os-17-527-2021} (DOI). Callies, U.: Sensitive dependence of trajectories on tracer seeding positions – coherent structures in German Bight backward drift simulations. Ocean Science. 2021. vol. 17, no. 2, 527-541. DOI: 10.5194/os-17-527-2021}} @misc{schwichtenberg_the_impact_2020, author={Schwichtenberg, F.,Pätsch, J.,Böttcher, M.,Thomas, H.,Winde, V.,Emeis, K.}, title={The impact of intertidal areas on the carbonate system of the southern North Sea}, year={2020}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-17-4223-2020}, abstract = {The coastal ocean is strongly affected by ocean acidification because of its shallow water depths, low volume, and the closeness to terrestrial dynamics. Earlier observations of dissolved inorganic carbon (DIC) and total alkalinity (TA) in the southern part of the North Sea, a northwest European shelf sea, revealed lower acidification effects than expected. It has been assumed that anaerobic degradation and subsequent TA release in the adjacent back-barrier tidal areas (Wadden Sea) in summertime is responsible for this phenomenon. In this study the exchange rates of TA and DIC between the Wadden Sea tidal basins and the North Sea and the consequences for the carbonate system in the German Bight are estimated using a 3D ecosystem model. The aim of this study is to differentiate the various sources contributing to observed high summer TA in the southern North Sea. Measured TA and DIC in the Wadden Sea are considered as model boundary conditions. This procedure acknowledges the dynamic behaviour of the Wadden Sea as an area of effective production and decomposition of organic material. According to the modelling results, 39 Gmol TA yr−1 were exported from the Wadden Sea into the North Sea, which is less than a previous estimate but within a comparable range. The interannual variabilities in TA and DIC, mainly driven by hydrodynamic conditions, were examined for the years 2001–2009. Dynamics in the carbonate system are found to be related to specific weather conditions. The results suggest that the Wadden Sea is an important driver for the carbonate system in the southern North Sea. On average 41 % of TA inventory changes in the German Bight were caused by riverine input, 37 % by net transport from adjacent North Sea sectors, 16 % by Wadden Sea export, and 6 % were caused by internal net production of TA. The dominant role of river input for the TA inventory disappears when focusing on TA concentration changes due to the corresponding freshwater fluxes diluting the marine TA concentrations. The ratio of exported TA versus DIC reflects the dominant underlying biogeochemical processes in the Wadden Sea. Whereas aerobic degradation of organic matter played a key role in the North Frisian Wadden Sea during all seasons of the year, anaerobic degradation of organic matter dominated in the East Frisian Wadden Sea. Despite the scarcity of high-resolution field data, it is shown that anaerobic degradation in the Wadden Sea is one of the main contributors of elevated summer TA values in the southern North Sea.}, note = {Online available at: \url{https://doi.org/10.5194/bg-17-4223-2020} (DOI). Schwichtenberg, F.; Pätsch, J.; Böttcher, M.; Thomas, H.; Winde, V.; Emeis, K.: The impact of intertidal areas on the carbonate system of the southern North Sea. Biogeosciences. 2020. vol. 17, no. 16, 4223-4245. DOI: 10.5194/bg-17-4223-2020}} @misc{bratek_nitrate_sources_2020, author={Bratek, A.,Emeis, K.,Sanders, T.,Wankel, S.,Struck, U.,Möbius, J.,Dähnke, K.}, title={Nitrate sources and the effect of land cover on the isotopic composition of nitrate in the catchment of the Rhône River}, year={2020}, howpublished = {journal article}, doi = {https://doi.org/10.1080/10256016.2020.1723580}, abstract = {The Rhône River originates in the high Alps and drains an intensely cultivated and industrialised catchment before it discharges to the Gulf of Lion. We investigated the interaction of catchment geomorphology with nitrate sources (atmosphere, agriculture, and nitrification of soil organic matter) and removal processes in large and diverse watersheds on the basis of dual nitrate isotope signatures in river water.,In March 2015, we took surface water samples along the Rhône River, including its main tributaries, and measured nutrient concentrations and the stable isotopic composition of nitrate (δ15N, δ18O and Δ17O), and water (δ18O-H2O).,Results show that high altitude regions are dominated by nitrate from nitrification in pristine soils and atmospheric deposition, while nitrate in the downstream Rhône River originates mainly from nitrification of agricultural/urban sources. Parallel increases in δ15N and δ18O reflect the influence of primary production. Previous studies suggested robust correlations between land use and δ15N-NO–3,. Based on our observation that nitrate δ15N values at higher altitudes are lower than expected, we assume that lower nitrate δ15N values likely reflect limited nitrate consumption and lower soil nitrogen turnover rates. We propose that correlation between land use and nitrate δ15N is sensitive to slope and geomorphology.}, note = {Online available at: \url{https://doi.org/10.1080/10256016.2020.1723580} (DOI). Bratek, A.; Emeis, K.; Sanders, T.; Wankel, S.; Struck, U.; Möbius, J.; Dähnke, K.: Nitrate sources and the effect of land cover on the isotopic composition of nitrate in the catchment of the Rhône River. Isotopes in Environmental and Health Studies. 2020. vol. 56, no. 1, 14-35. DOI: 10.1080/10256016.2020.1723580}} @misc{ptsch_distinct_mechanisms_2020, author={Pätsch, J.,Gouretski, V.,Hinrichs, I.,Koul, V.}, title={Distinct Mechanisms Underlying Interannual to Decadal Variability of Observed Salinity and Nutrient Concentration in the Northern North Sea}, year={2020}, howpublished = {journal article}, doi = {https://doi.org/10.1029/2019JC015825}, abstract = {The influence of large‐scale oceanic circulation on salinity in the northern North Sea has lead to the hypothesis that nutrient concentrations in this region are also driven by remote oceanic anomalies. Here, using a newly established biogeochemical data set of the North Sea, we show that interannual to decadal variability in winter nutrient concentrations exhibits distinct phase deviations from salinity. The variability in salinity is explained by zonal shifts in the position of the subpolar front (SPF) in the eastern North Atlantic and the associated advective delay. However, the high correlation and absence of advective delay between the position of the SPF and winter nutrient concentrations in the Shetland region (59–61°N, 1°W to 3°E) point to the role of atmospheric variability in driving concurrent changes in winter nutrient concentrations and the SPF position. Our analysis suggests that the prevailing wind direction and local distribution of winter nutrient concentrations together determine the interannual to decadal variability in winter nutrient concentrations in this region. In the analyzed observations, we find a strong spatial gradient in mean winter nutrient concentrations northwest of the Shetland region, which is absent in salinity. The horizontal shift of this spatial gradient, forced by changes in wind direction, has a larger influence on winter nutrient concentration in the Shetland region than the nutrient signal in oceanic anomalies originating from the eastern subpolar North Atlantic. Overall, we conclude that interannual to decadal variability in the observed nutrient concentrations is mainly driven by atmospheric variability here expressed as wind direction.}, note = {Online available at: \url{https://doi.org/10.1029/2019JC015825} (DOI). Pätsch, J.; Gouretski, V.; Hinrichs, I.; Koul, V.: Distinct Mechanisms Underlying Interannual to Decadal Variability of Observed Salinity and Nutrient Concentration in the Northern North Sea. Journal of Geophysical Research : Oceans. 2020. vol. 125, no. 5, e2019JC015825. DOI: 10.1029/2019JC015825}} @misc{maradino_from_monodisciplinary_2020, author={Maradino, C.,van Doorn, E.,McDonald, N.,Johnson, M.,Acma, B.,Breviere, E.,Campen, H.,Carou, S.,Cocco, E.,Endres, S.,Hilmi, N.,Hopkins, F.,Liss, P.,Maes, F.,Martensson, M.,Oeffner, J.,Oloyede, M.,Peters, A.,Quack, B.,Singh, P.,Thomas, H.}, title={From Monodisciplinary via Multidisciplinary to an Interdisciplinary Approach Investigating Air-Sea Interactions – a SOLAS Initiative}, year={2020}, howpublished = {journal article}, doi = {https://doi.org/10.1080/08920753.2020.1773208}, abstract = {Understanding the physical and biogeochemical interactions and feedbacks between the ocean and atmosphere is a vital component of environmental and Earth system research. The ability to predict and respond to future environmental change relies on a detailed understanding of these processes. The Surface Ocean-Lower Atmosphere Study (SOLAS) is an international research platform that focuses on the study of ocean-atmosphere interactions, for which Future Earth is a sponsor. SOLAS instigated a collaborative initiative process to connect efforts in the natural and social sciences related to these processes, as a contribution to the emerging Future Earth Ocean Knowledge-Action Network (Ocean KAN). This is imperative because many of the recent changes in the Earth system are anthropogenic. An understanding of adaptation and counteracting measures requires an alliance of scientists from both domains to bridge the gap between science and policy. To this end, three SOLAS research areas were targeted for a case study to determine a more effective method of interdisciplinary research: valuing carbon and the ocean’s role; air-sea interactions, policy and stewardship; and, air-sea interactions and the shipping industry.}, note = {Online available at: \url{https://doi.org/10.1080/08920753.2020.1773208} (DOI). Maradino, C.; van Doorn, E.; McDonald, N.; Johnson, M.; Acma, B.; Breviere, E.; Campen, H.; Carou, S.; Cocco, E.; Endres, S.; Hilmi, N.; Hopkins, F.; Liss, P.; Maes, F.; Martensson, M.; Oeffner, J.; Oloyede, M.; Peters, A.; Quack, B.; Singh, P.; Thomas, H.: From Monodisciplinary via Multidisciplinary to an Interdisciplinary Approach Investigating Air-Sea Interactions – a SOLAS Initiative. Coastal Management. 2020. vol. 48, no. 4, 238-256. DOI: 10.1080/08920753.2020.1773208}} @misc{bunzel_integrated_stratigraphy_2020, author={Bunzel, D.,Milker, Y.,Müller-Navarra, K.,Arz, H.,Friedrich, J.,Lahajnar, N.,Schmiedl, G.}, title={Integrated stratigraphy of foreland salt-marsh sediments of the south-eastern North Sea region}, year={2020}, howpublished = {journal article}, doi = {https://doi.org/10.1127/nos/2020/0540}, abstract = {Depositional processes in coastal wetlands respond to a changing climate as documented in the sediment sequences of salt marshes. In this context, robust chronologies are crucial for the reconstruction of salt-marsh depositional processes in the past. However, salt-marsh sediments from the highly dynamic North Sea coast often lack a reliable stratigraphy due to the combined influences of natural processes and human activities, causing a reworking and re-deposition of the sediments. Here, a combination of absolute and relative dating methods has been applied in order to establish an integrated stratigraphic framework for active foreland salt marshes along the south-eastern North Sea coast. This stratigraphic framework is based on radionuclides (210Pb, 137Cs, 241Am, 14C) and mercury (Hg) contaminations, together with ln(Zr/Rb) as a grain-size proxy for additional inter-correlation between the four studied sites. The studied salt marshes encompass different environmental settings concerning the inundation frequency and intensity, and anthropogenic influences. As a result, the reconstructed mean sediment-accretion rates range from 1.16 cm yr–1 in the anthropogenically modified and grazed coastal salt marsh at Friedrichskoog, to 1.31 cm yr–1 in the more sheltered and semi-enclosed salt marsh in the Bay of Tümlau, and up to 1.75 cm yr–1 in the dynamic open coastal salt-marsh at Kaiser-Wilhelm-Koog. Similar mean high accretion rates of 1.72 cm yr–1 are documented for the Eider estuary until AD 1965, before they dropped to 0.72 cm yr–1 after completion of the Eider tidal barrier in AD 1973. The results highlight the advantage of combining independent dating methods for the establishment of salt-marsh chronologies, which proves to be essential to compensate for absence or blurring of distinct stratigraphic signals in highly dynamic coastal depositional settings, such as the salt-marsh systems at the south-eastern North Sea coastal region. The reconstructed sediment-accretion rates suggest a high resilience of salt-marsh systems to ongoing sea-level rise as long as sediment availability and natural flooding dynamics are maintained.}, note = {Online available at: \url{https://doi.org/10.1127/nos/2020/0540} (DOI). Bunzel, D.; Milker, Y.; Müller-Navarra, K.; Arz, H.; Friedrich, J.; Lahajnar, N.; Schmiedl, G.: Integrated stratigraphy of foreland salt-marsh sediments of the south-eastern North Sea region. Newsletters on stratigraphy. 2020. vol. 53, no. 4, 415-442. DOI: 10.1127/nos/2020/0540}} @misc{liu_a_probabilistic_2020, author={Liu, Z.,Callies, U.}, title={A probabilistic model of decision making regarding the use of chemical dispersants to combat oil spills in the German Bight}, year={2020}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.watres.2019.115196}, abstract = {Oil spills are one of the major threats to the marine environment in the German Bight (North Sea). In case of an accident, application of chemical dispersants would be one response option among others. Dispersion breaks oil slicks into small droplets which get then mixed into the water column. Removal of the oil from the water surface may reduce contamination of the coast. However, the window of opportunity for effective dispersant application is short and there are concerns about potential effects to the marine life. We propose a Bayesian network (BN) as an interactive and intuitive tool for responders to justify decisions on using chemical dispersants and possibly the provision of appropriate assets. The BN combines detailed sub-BNs for different criteria that govern the decision process. Expected drift trajectories are estimated based on comprehensive numerical ensemble simulations of hypothetical oil spills. Ecological impacts are represented prototypically, focusing on vulnerability of seabird concentrations to pollution in coastal areas. Dispersant effectiveness is estimated considering oil properties and weather conditions. Decision making is supposed to be based on expected satisfaction. The definition of what is considered satisfactory is of central importance for the whole analysis.}, note = {Online available at: \url{https://doi.org/10.1016/j.watres.2019.115196} (DOI). Liu, Z.; Callies, U.: A probabilistic model of decision making regarding the use of chemical dispersants to combat oil spills in the German Bight. Water Research. 2020. vol. 169, 115196. DOI: 10.1016/j.watres.2019.115196}} @misc{bratek_spatial_variations_2020, author={Bratek, A.,Beusekom, J.,Neumann, A.,Sanders, T.,Friedrich, J.,Emeis, K.,Dähnke, K.}, title={Spatial variations in sedimentary N-transformation rates in the North Sea (German Bight)}, year={2020}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-17-2839-2020}, abstract = {In this study, we investigate the role of sedimentary N cycling in the southern North Sea. We present a budget of ammonification, nitrification and sedimentary NO−3,consumption and denitrification in contrasting sediment types of the German Bight (southern North Sea), including novel net ammonification rates. We incubated sediment cores from four representative locations in the German Bight (permeable, semi-permeable and impermeable sediments) with labeled nitrate and ammonium to calculate benthic fluxes of nitrate and ammonium and gross rates of ammonification and nitrification. Ammonium fluxes generally suggest oxic degradation of organic matter, but elevated fluxes at one sampling site point towards the importance of bioirrigation or short-term accumulation of organic matter. Sedimentary fluxes of dissolved inorganic nitrogen are an important source for primary producers in the water column, supporting ∼7 % to 59 % of the average annual primary production, depending on water depth.,We find that ammonification and oxygen penetration depth are the main drivers of sedimentary nitrification, but this nitrification is closely linked to denitrification. One-third of freshly produced nitrate in impermeable sediment and two-thirds in permeable sediment were reduced to N2. The semi-permeable and permeable sediments are responsible for ∼68 % of the total benthic N2 production rates, which, based solely on our data, amounts to ∼1030 t N d−1 in the southern North Sea. Thus, we conclude that semi-permeable and permeable sediments are the main sinks of reactive N, counteracting eutrophication in the southern North Sea (German Bight).}, note = {Online available at: \url{https://doi.org/10.5194/bg-17-2839-2020} (DOI). Bratek, A.; Beusekom, J.; Neumann, A.; Sanders, T.; Friedrich, J.; Emeis, K.; Dähnke, K.: Spatial variations in sedimentary N-transformation rates in the North Sea (German Bight). Biogeosciences. 2020. vol. 17, no. 10, 2839-2851. DOI: 10.5194/bg-17-2839-2020}} @misc{beauprlaperrire_the_recent_2020, author={Beaupré-Laperrière, A.,Mucci, A.,Thomas, H.}, title={The recent state and variability of the carbonate system of the Canadian Arctic Archipelago and adjacent basins in the context of ocean acidification}, year={2020}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-17-3923-2020}, abstract = {Ocean acidification driven by the uptake of anthropogenic CO2 by the surface oceans constitutes a potential threat to the health of marine ecosystems around the globe. The Arctic Ocean is particularly vulnerable to acidification and thus is an ideal region to study the progression and effects of acidification before they become globally widespread. The appearance of undersaturated surface waters with respect to the carbonate mineral aragonite (ΩA<1), an important threshold beyond which the calcification and growth of some marine organisms might be hindered, has recently been documented in the Canada Basin and adjacent Canadian Arctic Archipelago (CAA), a dynamic region with an inherently strong variability in biogeochemical processes. Nonetheless, few of these observations were made in the last 5 years and the spatial coverage in the latter region is poor. We use a dataset of carbonate system parameters measured in the CAA and its adjacent basins (Canada Basin and Baffin Bay) from 2003 to 2016 to describe the recent state of these parameters across the Canadian Arctic and investigate the amplitude and sources of the system's variability over more than a decade. Our findings reveal that, in the summers of 2014 to 2016, the ocean surface across our study area served as a net CO2 sink and was partly undersaturated with respect to aragonite in the Canada Basin and the Queen Maud Gulf, the latter region exhibiting undersaturation over its entire water column at some locations. We estimate, using measurements made across several years, that approximately a third of the interannual variability in surface dissolved inorganic carbon (DIC) concentrations in the CAA results from fluctuations in biological activity. In consideration of the system's variability resulting from these fluctuations, we derive times of emergence of the anthropogenic ocean acidification signal for carbonate system parameters in the study area.}, note = {Online available at: \url{https://doi.org/10.5194/bg-17-3923-2020} (DOI). Beaupré-Laperrière, A.; Mucci, A.; Thomas, H.: The recent state and variability of the carbonate system of the Canadian Arctic Archipelago and adjacent basins in the context of ocean acidification. Biogeosciences. 2020. vol. 17, no. 14, 3923-3942. DOI: 10.5194/bg-17-3923-2020}} @misc{mears_using_226ra_2020, author={Mears, C.,Thomas, H.,Henderson, P.,Charette, M.,MacIntyre, H.,Dehairs, F.,Monnin, C.,Mucci, A.}, title={Using 226Ra and 228Ra isotopes to distinguish water mass distribution in the Canadian Arctic Archipelago}, year={2020}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-17-4937-2020}, abstract = {As a shelf dominated basin, the Arctic Ocean and its biogeochemistry are heavily influenced by continental and riverine sources. Radium isotopes (226Ra, 228Ra, 224Ra, 223Ra), are transferred from the sediments to seawater, making them ideal tracers of sediment-water exchange processes and ocean mixing. 226Ra and 228Ra are the two longer-lived isotopes of the Radium Quartet (226Ra, t1/2 = 1600 y and 228Ra, t1/2 = 5.8 y). Because of their long half-lives they can provide insight into the water mass compositions, distribution patterns, as well as mixing processes and the associated timescales throughout the Canadian Arctic Archipelago (CAA). The wide range of 226Ra, 228Ra, and of the 228Ra / 226Ra ratio, measured in water samples collected during the 2015 GEOTRACES cruise, complemented by additional chemical tracers (dissolved inorganic carbon (DIC), total alkalinity (AT), barium (Ba), and the stable oxygen isotope composition of water (δ18O)) highlight the dominant biogeochemical, hydrographic and bathymetric features of the CAA. Bathymetric features, such as the continental shelf and shallow coastal sills, are critical in modulating circulation patterns within the CAA, including the bulk flow of Pacific waters and the inhibited eastward flow of denser Atlantic waters through the CAA. Using a Principal Component Analysis, we unravel the dominant mechanisms and the apparent water mass end-members that shape the tracer distributions. We identify two distinct water masses located above and below the upper halocline layer throughout the CAA, as well as distinctly differentiate surface waters in the eastern and western CAA. Furthermore, we identify water exchange across 80° W, inferring a draw of Atlantic water, originating from Baffin Bay, into the CAA. In other words, this implies the presence of an Atlantic water U-turn located at Barrow Strait, where the same water mass is seen along the northernmost edge at 80° W as well as along south-easternmost confines of Lancaster Sound. Overall, this study provides a stepping stone for future research initiatives within the Canadian Arctic Archipelago, revealing how quantifying disparities in radioactive isotopes can provide valuable information on the potential effects of climate change within vulnerable areas such as the CAA.}, note = {Online available at: \url{https://doi.org/10.5194/bg-17-4937-2020} (DOI). Mears, C.; Thomas, H.; Henderson, P.; Charette, M.; MacIntyre, H.; Dehairs, F.; Monnin, C.; Mucci, A.: Using 226Ra and 228Ra isotopes to distinguish water mass distribution in the Canadian Arctic Archipelago. Biogeosciences. 2020. vol. 17, no. 20, 4937-4959. DOI: 10.5194/bg-17-4937-2020}} @misc{zhu_algal_accumulation_2020, author={Zhu, L.,Shi, W.,Van Dam, B.,Kong, L.,Yu, J.,Qin, B.}, title={Algal Accumulation Decreases Sediment Nitrogen Removal by Uncoupling Nitrification-Denitrification in Shallow Eutrophic Lakes}, year={2020}, howpublished = {journal article}, doi = {https://doi.org/10.1021/acs.est.9b05549}, abstract = {In eutrophic lakes, the decay of settled algal biomass generates organic carbon and consumes oxygen, favoring sediment nitrogen loss via denitrification. However, persistent winds can cause algae to accumulate into dense mats, with uncertain impacts on sediment nitrogen removal. In this study, we investigated the effects of algal accumulation on sediment nitrogen removal in a shallow and eutrophic Chinese lake, Taihu. We found that experimental treatments of increased algal accumulation were associated with decreased sediment nitrogen losses, indicating the potential for a break in coupled nitrification-denitrification. Likewise, field measurements indicated similar decreases in sediment nitrogen losses when algal accumulation occurred. It is possibly caused by the decay of excess algal biomass, which likely depleted dissolved oxygen, and could have inhibited nitrification and thereby denitrification in sediments. We estimate that if such algal accumulations occurred over 20% or 10% of lake area in Taihu, sediment nitrogen removal rates decreased from 835.6 to 167.2 and 77.2 μmol N m–2h–1, respectively, during algal accumulation period. While nitrogen removal may recover later, the apparent nitrogen removal decrease may create a window for algal proliferation and intensification. This study advances our knowledge on the impacts of algal blooms on nitrogen removal in shallow eutrophic lakes.}, note = {Online available at: \url{https://doi.org/10.1021/acs.est.9b05549} (DOI). Zhu, L.; Shi, W.; Van Dam, B.; Kong, L.; Yu, J.; Qin, B.: Algal Accumulation Decreases Sediment Nitrogen Removal by Uncoupling Nitrification-Denitrification in Shallow Eutrophic Lakes. Environmental Science and Technology. 2020. vol. 54, no. 10, 6194-6201. DOI: 10.1021/acs.est.9b05549}} @misc{zimmermann_zinc_isotopic_2020, author={Zimmermann, T.,Mohammed, F.,Reese, A.,Wieser, M.,Kleeberg, U.,Pröfrock, D.,Irrgeher, J.}, title={Zinc isotopic variation of water and surface sediments from the German Elbe River}, year={2020}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.scitotenv.2019.135219}, abstract = {Recent studies suggested the use of the isotopic composition of Zn as a possible tracer for anthropogenic Zn emissions. Nevertheless, studies mainly focused on sampling areas of a few km2 with well-characterized anthropogenic Zn emissions. In contrast, this study focused on analyzing a large sample set of water and sediment samples taken throughout the course of the Elbe River, a large, anthropogenically impacted river system located in Central Europe. The primary objective was to evaluate the use of the isotopic composition of Zn to trace anthropogenic Zn emission on a large regional scale. In total 18 water and 26 surface sediment samples were investigated, covering the complete course of over 700 km of the German Elbe between the German/Czech border and the German North Sea, including six tributaries. Stable isotope abundance ratios of Zn were assessed by multi-collector inductively coupled plasma mass spectrometry (MC ICP-MS) in water filtrates (<0.45 µm) and total digests of the sieved surface sediment fraction (<63 µm) after analyte/matrix separation using Bio-Rad AG MP-1 resin via a micro-column approach and application of a 64Zn/67Zn double spike. Measured isotopic compositions of δ66Zn/64ZnIRMM-3702 ranged from −0.10 ‰ to 0.32 ‰ for sediment samples, and from −0.51 ‰ to 0.45 ‰ for water samples. In comparison to historical data some tributaries still feature high mass fractions of anthropogenic Zn (e.g. Mulde, Triebisch) combined with δ66Zn/64ZnIRMM-3702 values higher than the lithogenic background. The dissolved δ66Zn/64ZnIRMM-3702 values showed a potential correlation with pH. Our results indicate that biogeochemical processes like absorption may play a key role in natural Zn isotopic fractionation making it difficult to distinguish between natural and anthropogenic processes.}, note = {Online available at: \url{https://doi.org/10.1016/j.scitotenv.2019.135219} (DOI). Zimmermann, T.; Mohammed, F.; Reese, A.; Wieser, M.; Kleeberg, U.; Pröfrock, D.; Irrgeher, J.: Zinc isotopic variation of water and surface sediments from the German Elbe River. Science of the Total Environment. 2020. vol. 707, 135219. DOI: 10.1016/j.scitotenv.2019.135219}} @misc{pavlidou_seasonal_variations_2020, author={Pavlidou, A.,Velaoras, D.,Karageorgis, A.,Rousselaki, E.,Parinos, C.,Dähnke, K.,Möbius, J.,Meador, T.,Psarra, S.,Frangoulis, C.,Souvermezoglou, E.,Androni, A.,Assimakopoulou, G.,Chaikalis, S.,Kanellopoulos, T.,Lagaria, A.,Zachioti, P.,Gogou, A.}, title={Seasonal variations of biochemical and optical properties, physical dynamics and N stable isotopic composition in three northeastern Mediterranean basins (Aegean, Cretan and Ionian Seas)}, year={2020}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.dsr2.2019.104704}, abstract = {Multidisciplinary surveys were conducted in October 2014, May 2015 and December 2015 in three major deep basins of the Eastern Mediterranean Sea (EMED) - the north Aegean Sea, the south Aegean (Cretan Sea) and its straits, and the south Ionian Sea - providing the most recent information on physical, biochemical and particle dynamics, along with nitrogen stable isotope composition. A north-south gradient in oligotrophy was observed, presumably related to more pronounced nutrient supply through the inflow of Black Sea Water and riverine inputs in the surface waters of the north Aegean Sea, coinciding with the relatively higher productivity in this area. Consumption rates of Dissolved Oxygen (DO) in the deep waters of the north Aegean Sea reveal the physical dynamics of the subsurface layers. According to this, it seems that no deep water formation has occurred in the Athos basin after 2008. In the Cretan Sea, the Transitional Mediterranean Water mass was identified at the layer 700-1200 m showing a slight decrease in its core depth, when compared with previous studies in the area. Seasonal variations of DO and salinity in the deep waters of the Ionian Sea indicate the intrusion of more oxygenated and less saline waters of Adriatic origin in the bathypelagic layer of the south Ionian Sea. Detailed determination of stable isotope ratios for nitrate (δ15N-NO3) and suspended particulate nitrogen (δ15N-PN) in various water column depth of the three basins showed a further decrease of the overall low EMED δ15N signal, when compared with previous studies in the area. This trend can be attributed to the onward atmospheric deposition of anthropogenic N to the EMED. The δ15N-PN depth profiles exhibited clear Rayleigh-type isotope fractionation and associated with remineralisation throughout the water column, implying that the unique, isolated oceanic basins of the Eastern Mediterranean serve as important marine observatories of anthropogenic influences on marine nutrient budgets.}, note = {Online available at: \url{https://doi.org/10.1016/j.dsr2.2019.104704} (DOI). Pavlidou, A.; Velaoras, D.; Karageorgis, A.; Rousselaki, E.; Parinos, C.; Dähnke, K.; Möbius, J.; Meador, T.; Psarra, S.; Frangoulis, C.; Souvermezoglou, E.; Androni, A.; Assimakopoulou, G.; Chaikalis, S.; Kanellopoulos, T.; Lagaria, A.; Zachioti, P.; Gogou, A.: Seasonal variations of biochemical and optical properties, physical dynamics and N stable isotopic composition in three northeastern Mediterranean basins (Aegean, Cretan and Ionian Seas). Deep-Sea Research Part II. 2020. vol. 171, 104704. DOI: 10.1016/j.dsr2.2019.104704}} @misc{kerimoglu_interactive_impacts_2020, author={Kerimoglu, O.,Voynova, Y.,Chegini, F.,Brix, H.,Callies, U.,Hofmeister, R.,Klingbeil, K.,Schrum, C.,van Beusekom, J.}, title={Interactive impacts of meteorological and hydrological conditions on the physical and biogeochemical structure of a coastal system}, year={2020}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-17-5097-2020}, abstract = {The German Bight was exposed to record high riverine discharges in June 2013, as a result of flooding of the Elbe and Weser rivers. Several anomalous observations suggested that the hydrodynamical and biogeochemical states of the system were impacted by this event. In this study, we developed a biogeochemical model and coupled it with a previously introduced high-resolution hydrodynamical model of the southern North Sea in order to better characterize these impacts and gain insight into the underlying processes. Performance of the model was assessed using an extensive set of in situ measurements for the period 2011–2014. We first improved the realism of the hydrodynamic model with regard to the representation of cross-shore gradients, mainly through inclusion of flow-dependent horizontal mixing. Among other characteristic features of the system, the coupled model system can reproduce the low salinities, high nutrient concentrations and low oxygen concentrations in the bottom layers observed within the German Bight following the flood event. Through a scenario analysis, we examined the sensitivity of the patterns observed during July 2013 to the hydrological and meteorological forcing in isolation. Within the region of freshwater influence (ROFI) of the Elbe–Weser rivers, the flood event clearly dominated the changes in salinity and nutrient concentrations, as expected. However, our findings point to the relevance of the peculiarities in the meteorological conditions in 2013 as well: a combination of low wind speeds, warm air temperatures and cold bottom-water temperatures resulted in a strong thermal stratification in the outer regions and limited vertical nutrient transport to the surface layers. Within the central region, the thermal and haline dynamics interactively resulted in an intense density stratification. This intense stratification, in turn, led to enhanced primary production within the central region enriched by nutrients due to the flood but led to reduction within the nutrient-limited outer region, and it caused a widespread oxygen depletion in bottom waters. Our results further point to the enhancement of the current velocities at the surface as a result of haline stratification and to intensification of the thermohaline estuarine-like circulation in the Wadden Sea, both driven by the flood event.}, note = {Online available at: \url{https://doi.org/10.5194/bg-17-5097-2020} (DOI). Kerimoglu, O.; Voynova, Y.; Chegini, F.; Brix, H.; Callies, U.; Hofmeister, R.; Klingbeil, K.; Schrum, C.; van Beusekom, J.: Interactive impacts of meteorological and hydrological conditions on the physical and biogeochemical structure of a coastal system. Biogeosciences. 2020. vol. 17, no. 20, 5097-5127. DOI: 10.5194/bg-17-5097-2020}} @misc{zhu_optimized_methods_2020, author={Zhu, L.,Yu, J.,Van Dam, B.,Cao, H.,Pu, Y.,Shi, W.,Qin, B.}, title={Optimized methods for diffusive greenhouse gas flux analyses in inland waters}, year={2020}, howpublished = {journal article}, doi = {https://doi.org/10.1007/s11356-019-06436-9}, abstract = {Inland waters are considered hotspots of greenhouse gas (GHG) emissions and have been extensively researched. Static chamber (STAT) and thin boundary layer (BLE) are two commonly used methods for analyzing diffusive GHG emissions from inland waters. However, the STAT method is often disturbed by GHG bubbles; meanwhile, many kinds of headspace gas are used in the BLE method, but the differences between their diffusive GHG emission analysis results are not understood. In this study, the chamber in the STAT method was modified to combat the disturbances from GHG bubbles, and the typically used gases for the BLE method, namely, pure nitrogen, air, and filtered air, were comparatively studied. Results demonstrated that the modified chamber could effectively prevent the invasion of GHG bubbles; it increased the success rate from 67 to 90% in the field test, with no obvious impacts on the results of the GHG emission analyses. The use of air and filtered air in the BLE method yielded the lower values of GHG emissions relative to pure nitrogen, and this finding was potentially attributed to the inhibition effects of the residual GHGs and high humidity in air and filtered air on the extraction of diffusive GHGs from the surface water. This study improved the commonly used methods for diffusive GHG emission analysis, and the current findings are beneficial to the study of GHG emissions from inland waters.}, note = {Online available at: \url{https://doi.org/10.1007/s11356-019-06436-9} (DOI). Zhu, L.; Yu, J.; Van Dam, B.; Cao, H.; Pu, Y.; Shi, W.; Qin, B.: Optimized methods for diffusive greenhouse gas flux analyses in inland waters. Environmental Science and Pollution Research. 2020. vol. 27, no. 21, 25870-25876. DOI: 10.1007/s11356-019-06436-9}} @misc{zeller_carbonateassociated_organic_2020, author={Zeller, M.,Van Dam, B.,Lopes, C.,Kominoski, J.}, title={Carbonate-Associated Organic Matter Is a Detectable Dissolved Organic Matter Source in a Subtropical Seagrass Meadow}, year={2020}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2020.580284}, abstract = {Seagrasses can enhance carbonate sediment dissolution on diel timescales through oxidation of the rhizosphere and production of acidic exudates of dissolved organic matter (DOM). Carbonates can also associate with DOM either from biogenesis or later adsorption. However, the impact of mineral dissolution on the release of carbonate-associated DOM and on surface water DOM quantity and quality is unclear. We analyzed sub-daily changes in EEMS-PARAFAC components (excitation-emission matrices with parallel factor analysis), fluorescence, and absorbance properties of surface waters over adjacent low- and high-density (LD and HD) Thalassia testudinum seagrass meadows in Florida Bay, United States. We compared fluorescent DOM characteristics of seagrass leaves, acidified (dissolved) sediment leachates, and surface water samples collected from the HD and LD sites with surface water from a nearby mangrove island. The HD site was higher in humic-like PARAFAC components, specific ultraviolet absorbance, and humification index. We did not observe changes in EEMs indices or PARAFAC components with cumulative photosynthetically active radiation, indicating that photodegradation was unlikely to contribute to temporal variability in DOM. Similarities among DOM optical properties from acidified sediment leachates and surface waters at both sites suggest the importance of carbonate dissolution/reprecipitation for DOM cycling, while seagrass leaf leachates were markedly dissimilar to surface waters. We observed similarities among the acidified sediment leachate, surface water, and porewater elsewhere in Florida Bay, indicating dynamic coupling between these DOM pools. From this short study, Florida Bay DOM cycling appears to be more sensitive to carbonate dissolution than to additional photodegradation or authigenic seagrass leaching.}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2020.580284} (DOI). Zeller, M.; Van Dam, B.; Lopes, C.; Kominoski, J.: Carbonate-Associated Organic Matter Is a Detectable Dissolved Organic Matter Source in a Subtropical Seagrass Meadow. Frontiers in Marine Science. 2020. vol. 7, 580284. DOI: 10.3389/fmars.2020.580284}} @misc{delaigue_spatial_variations_2020, author={Delaigue, L.,Thomas, H.,Mucci, A.}, title={Spatial variations in CO2 fluxes in the Saguenay Fjord (Quebec, Canada) and results of a water mixing model}, year={2020}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-17-547-2020}, abstract = {The Saguenay Fjord is a major tributary of the St. Lawrence Estuary and is strongly stratified. A 6–8 m wedge of brackish water typically overlies up to 270 m of seawater. Relative to the St. Lawrence River, the surface waters of the Saguenay Fjord are less alkaline and host higher dissolved organic carbon (DOC) concentrations. In view of the latter, surface waters of the fjord are expected to be a net source of CO2 to the atmosphere, as they partly originate from the flushing of organic-rich soil porewaters. Nonetheless, the CO2 dynamics in the fjord are modulated with the rising tide by the intrusion, at the surface, of brackish water from the Upper St. Lawrence Estuary, as well as an overflow of mixed seawater over the shallow sill from the Lower St. Lawrence Estuary. Using geochemical and isotopic tracers, in combination with an optimization multiparameter algorithm (OMP), we determined the relative contribution of known source waters to the water column in the Saguenay Fjord, including waters that originate from the Lower St. Lawrence Estuary and replenish the fjord's deep basins. These results, when included in a conservative mixing model and compared to field measurements, serve to identify the dominant factors, other than physical mixing, such as biological activity (photosynthesis, respiration) and gas exchange at the air–water interface, that impact the water properties (e.g., pH, pCO2) of the fjord. Results indicate that the fjord's surface waters are a net source of CO2 to the atmosphere during periods of high freshwater discharge (e.g., spring freshet), whereas they serve as a net sink of atmospheric CO2 when their practical salinity exceeds ∼5–10.}, note = {Online available at: \url{https://doi.org/10.5194/bg-17-547-2020} (DOI). Delaigue, L.; Thomas, H.; Mucci, A.: Spatial variations in CO2 fluxes in the Saguenay Fjord (Quebec, Canada) and results of a water mixing model. Biogeosciences. 2020. vol. 17, no. 2, 547-566. DOI: 10.5194/bg-17-547-2020}} @misc{sanders_cold_adapted_2019, author={Sanders, T.,Fiencke, C.,Hüpeden, J.,Pfeiffer, E.M.,Spieck, E.}, title={Cold Adapted Nitrosospira sp.: A Potential Crucial Contributor of Ammonia Oxidation in Cryosols of Permafrost-Affected Landscapes in Northeast Siberia}, year={2019}, howpublished = {journal article}, doi = {https://doi.org/10.3390/microorganisms7120699}, abstract = {Permafrost-affected landscape soils are rich in organic matter and contain a high fraction of organic nitrogen, but much of this organic matter remains inaccessible due to nitrogen limitation. Microbial nitrification is a key process in the nitrogen cycle, controlling the availability of dissolved inorganic nitrogen (DIN) such as ammonium and nitrate. In this study, we investigate the microbial diversity of canonical nitrifiers and their potential nitrifying activity in the active layer of different Arctic cryosols in the Lena River Delta in North-East Siberia. These cryosols are located on Samoylov Island, which has two geomorphological landscapes with mineral soils in the modern floodplain and organic-rich soils in the low-centered polygonal tundra of the Holocene river terrace. Microcosm incubations show that the highest potential ammonia oxidation rates are found in low organic soils, and the rates depend on organic matter content and quality, vegetation cover, and water content. As shown by 16S rRNA amplicon sequencing, nitrifiers represented 0.6% to 6.2% of the total microbial community. More than 50% of the nitrifiers belonged to the genus Nitrosospira. Based on PCR amoA analysis, ammonia-oxidizing bacteria (AOB) were found in nearly all soil types, whereas ammonia-oxidizing archaea (AOA) were only detected in low-organic soils. In cultivation-based approaches, mainly Nitrosospira-like AOB were enriched and characterized as psychrotolerant, with temperature optima slightly above 20 °C. This study suggests a ubiquitous distribution of ammonia-oxidizing microorganisms (bacteria and archaea) in permafrost-affected landscapes of Siberia with cold-adapted AOB, especially of the genus Nitrosospira, as potentially crucial ammonia oxidizers in the cryosols.}, note = {Online available at: \url{https://doi.org/10.3390/microorganisms7120699} (DOI). Sanders, T.; Fiencke, C.; Hüpeden, J.; Pfeiffer, E.; Spieck, E.: Cold Adapted Nitrosospira sp.: A Potential Crucial Contributor of Ammonia Oxidation in Cryosols of Permafrost-Affected Landscapes in Northeast Siberia. Microorganisms. 2019. vol. 7, no. 12, 699. DOI: 10.3390/microorganisms7120699}} @misc{vandam_net_heterotrophy_2019, author={Van Dam, B.,Lopes, C.,Osburn, C.,Fourqurean, J.}, title={Net heterotrophy and carbonate dissolution in two subtropical seagrass meadows}, year={2019}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-16-4411-2019}, abstract = {The net ecosystem productivity (NEP) of two seagrass meadows within one of the largest seagrass ecosystems in the world, Florida Bay, was assessed using direct measurements over consecutive diel cycles during a short study in the fall of 2018. We report significant differences between NEP determined by dissolved inorganic carbon (NEPDIC) and by dissolved oxygen (NEPDO), likely driven by differences in air–water gas exchange and contrasting responses to variations in light intensity. We also acknowledge the impact of advective exchange on metabolic calculations of NEP and net ecosystem calcification (NEC) using the “open-water” approach and attempt to quantify this effect. In this first direct determination of NEPDIC in seagrass, we found that both seagrass ecosystems were net heterotrophic, on average, despite large differences in seagrass net above-ground primary productivity. NEC was also negative, indicating that both sites were net dissolving carbonate minerals. We suggest that a combination of carbonate dissolution and respiration in sediments exceeded seagrass primary production and calcification, supporting our negative NEP and NEC measurements. However, given the limited spatial (two sites) and temporal (8 d) extent of this study, our results may not be representative of Florida Bay as a whole and may be season-specific. The results of this study highlight the need for better temporal resolution, accurate carbonate chemistry accounting, and an improved understanding of physical mixing processes in future seagrass metabolism studies.}, note = {Online available at: \url{https://doi.org/10.5194/bg-16-4411-2019} (DOI). Van Dam, B.; Lopes, C.; Osburn, C.; Fourqurean, J.: Net heterotrophy and carbonate dissolution in two subtropical seagrass meadows. Biogeosciences. 2019. vol. 16, no. 22, 4411-4428. DOI: 10.5194/bg-16-4411-2019}} @misc{harms_nutrient_distribution_2019, author={Harms, N.,Lahajnar, N.,Gaye, B.,Rixen, T.,Dähnke, K.,Ankele, M.,Schwarz-Schampera, U.,Emeis, K.}, title={Nutrient distribution and nitrogen and oxygen isotopic compositionof nitrate in water masses of the subtropical southern Indian Ocean}, year={2019}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-16-2715-2019}, abstract = {The Indian Ocean subtropical gyre (IOSG) is one of five extensive subtropical gyres in the world's ocean. In contrast to those of the Atlantic and Pacific oceans, the IOSG has been sparsely studied. We investigate the water mass distributions based on temperature, salinity and oxygen data, and the concentrations of water column nutrients and the stable isotope composition of nitrate, using water samples collected between ∼30∘ S and the Equator during two expeditions: MSM 59/2 in 2016 and SO 259 in 2017. Our results are the first from this oceanic region and provide new information on nitrogen sources and transformation processes. We identify the thick layer of nutrient-depleted surface waters of the oligotrophic IOSG with nitrate (NO−3) and phosphate (PO3−4) concentrations of < 3 and < 0.3 µmol kg−1, respectively (< 300 m; σ < 26.4 kg−1 m−3). Increased nutrient concentrations towards the Equator represent the northern limb of the gyre, which is characterized by typical strong horizontal gradients of the outcropping nutriclines. The influx of the Subantarctic Mode Water (SAMW) from the Southern Ocean injects oxygen-saturated waters with preformed nutrients, indicated by the increased N and O isotope composition of nitrate (δ15N > 7 ‰; δ18O > 4 ‰) at 400–500 m (26.6–26.7 kg−1 m−3), into the subtropical thermocline. These values reflect partial N assimilation in the Southern Ocean. Moreover, in the northern study area, a residue of nitrate affected by denitrification in the Arabian Sea is imported into intermediate and deep water masses (> 27.0 kg−1 m−3) of the gyre, indicated by an N deficit (N* ∼−1 to −4 µmol kg−1) and by elevated isotopic ratios of nitrate (δ15N > 7 ‰; δ18O > 3 ‰). Remineralization of partially assimilated organic matter, produced in the subantarctic, leads to a decoupling of N and O isotopes in nitrate and results in a relatively low Δ(15–18) value of < 3 ‰ within the SAMW. In contrast, remineralization of 15N-enriched organic matter from the Arabian Sea indicates higher Δ(15–18) values of > 4 ‰ within the Red Sea–Persian Gulf Intermediate Water (RSPGIW). Thus, the subtropical southern Indian Ocean is supplied by preformed nitrate from the lateral influx of water masses from regions exhibiting distinctly different N-cycle processes documented in the dual isotope composition of nitrate. Additionally, a significant contribution of N2 fixation between 20.36 and 23.91∘ S is inferred from reduced δ15N–NO−3 values towards surface waters (upward decrease of δ15N ∼2.4 ‰), N* values of > 2 µmol kg−1 and a relatively low Δ(15–18) value of < 3 ‰. A mass and isotope budget implies that at least 32 %–34 % of the nitrate in the upper ocean between 20.36 and 23.91∘ S is provided from newly fixed nitrogen, whereas N2 fixation appears to be limited by iron or temperature south of 26∘ S.}, note = {Online available at: \url{https://doi.org/10.5194/bg-16-2715-2019} (DOI). Harms, N.; Lahajnar, N.; Gaye, B.; Rixen, T.; Dähnke, K.; Ankele, M.; Schwarz-Schampera, U.; Emeis, K.: Nutrient distribution and nitrogen and oxygen isotopic compositionof nitrate in water masses of the subtropical southern Indian Ocean. Biogeosciences. 2019. vol. 16, no. 13, 2715-2732. DOI: 10.5194/bg-16-2715-2019}} @misc{neumann_ballasted_flocs_2019, author={Neumann, A.,Hass, H.C.,Moebius, J.,Naderipour, C.}, title={Ballasted Flocs Capture Pelagic Primary Production and Alter the Local Sediment Characteristics in the Coastal German Bight (North Sea)}, year={2019}, howpublished = {journal article}, doi = {https://doi.org/10.3390/geosciences9080344}, abstract = {Suspended, organic matter, especially in the form of adhesive extracellular polymers (EPS), tends to form flocs, which may also incorporate suspended lithogenic particles in coastal environments. With an increased settling velocity, these ballasted flocs form in a narrow zone along the coast and potentially represent a major source of pelagic primary production for the benthic community. We sought support for this hypothesis by examining our measurements of the mud content, porosity, permeability, pigment content, and specific respiration rate of sediment from the German Bight (North Sea) for signs that the pelagic zone of ballasted floc formation is affecting the local sediment characteristics. Based on a simple bottom-shear stress model and by employing empirical correlations of sediment characteristics we were able to find strong indications that this is actually the case. Our results demonstrate how ballasted flocs contribute to the benthic pelagic coupling in a high turbulence environment.}, note = {Online available at: \url{https://doi.org/10.3390/geosciences9080344} (DOI). Neumann, A.; Hass, H.; Moebius, J.; Naderipour, C.: Ballasted Flocs Capture Pelagic Primary Production and Alter the Local Sediment Characteristics in the Coastal German Bight (North Sea). Geosciences. 2019. vol. 9, no. 8, 344. DOI: 10.3390/geosciences9080344}} @misc{stevens_partial_recovery_2019, author={Stevens, T.,Mee, L.,Friedrich, J.,Aleynik, D.,Minicheva, G.}, title={Partial Recovery of Macro-Epibenthic Assemblages on the North-West Shelf of the Black Sea}, year={2019}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2019.00474}, abstract = {The north-west shelf of the Black Sea has suffered well-documented declines in biodiversity since the 1960s, and by the 1990s was considered a dead zone with virtually no sign of macroscopic epibenthic life. It was characterised by high levels of anthropogenic input, massive phytoplankton blooms, and periodically hypoxic to anoxic bottom waters. An important contributor to primary production on the northwest shelf is the red alga Phyllophora spp. growing in waters to 70 m depth. Phyllophora is a habitat forming taxon supporting complex assemblages of bivalves, sponges, and ascidians, with an associated rich fish fauna. From 1990 on, nutrient loads entering the system plummeted and the severity of algal blooms decreased. Changes to benthic communities, however, were far less rapid, and the trajectory and rate of any recovery of the dead zone, in particular Zernov’s Phyllophora Field, is far from certain. This study used towed underwater video imagery from research cruises in summer 2006 and spring 2008 to classify and map macro-epibenthic assemblage structure, and related this to putative physical, chemical and spatial drivers. Distinct and relatively stable benthic communities were in evidence across the northwest shelf at that time. These communities were largely structured by substrate type and depth, but there is some evidence that nutrients continued to play a role. Phyllophora spp. was present across much, but not all, of its former range, but at far lower percent cover than previously. The pattern of abundance of Phyllophora in 2006-08 did not correlate with the documented pre-eutrophication pattern from 1966. There is some evidence that faster-growing opportunistic species have hindered to recovery. We conclude that while there was evidence of sustained recovery, by 2008 the macro-epibenthic communities of the northwest shelf of the Black Sea were far from their pre-eutrophication state.}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2019.00474} (DOI). Stevens, T.; Mee, L.; Friedrich, J.; Aleynik, D.; Minicheva, G.: Partial Recovery of Macro-Epibenthic Assemblages on the North-West Shelf of the Black Sea. Frontiers in Marine Science. 2019. vol. 6, 474. DOI: 10.3389/fmars.2019.00474}} @misc{rixen_the_ballast_2019, author={Rixen, T.,Gaye, B.,Emeis, K.,Ramaswamy, V.}, title={The ballast effect of lithogenic matter and its influences on the carbon fluxes in the Indian Ocean}, year={2019}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-16-485-2019}, abstract = {Data obtained from long-term sediment trap experiments in the Indian Ocean in conjunction with satellite observations illustrate the influence of primary production and the ballast effect on organic carbon flux into the deep sea. They suggest that primary production is the main control on the spatial variability of organic carbon fluxes at most of our study sites in the Indian Ocean, except at sites influenced by river discharges. At these sites the spatial variability of organic carbon flux is influenced by lithogenic matter content. To quantify the impact of lithogenic matter on the organic carbon flux, the densities of the main ballast minerals, their flux rates and seawater properties were used to calculate sinking speeds of material intercepted by sediment traps. Sinking speeds in combination with satellite-derived export production rates allowed us to compute organic carbon fluxes. Flux calculations imply that lithogenic matter ballast increases organic carbon fluxes at all sampling sites in the Indian Ocean by enhancing sinking speeds and reducing the time of organic matter respiration in the water column. We calculated that lithogenic matter content in aggregates and pellets enhances organic carbon flux rates on average by 45 % and by up to 62 % at trap locations in the river-influenced regions of the Indian Ocean. Such a strong lithogenic matter ballast effect explains the fact that organic carbon fluxes are higher in the low-productive southern Java Sea compared to the high-productive western Arabian Sea. It also implies that land use changes and the associated enhanced transport of lithogenic matter from land into the ocean may significantly affect the CO2 uptake of the organic carbon pump in the receiving ocean areas.}, note = {Online available at: \url{https://doi.org/10.5194/bg-16-485-2019} (DOI). Rixen, T.; Gaye, B.; Emeis, K.; Ramaswamy, V.: The ballast effect of lithogenic matter and its influences on the carbon fluxes in the Indian Ocean. Biogeosciences. 2019. vol. 16, no. 2, 485-503. DOI: 10.5194/bg-16-485-2019}} @misc{callies_submesoscale_dispersion_2019, author={Callies, U.,Carrasco, R.,Floeter, J.,Horstmann, J.,Quante, M.}, title={Submesoscale dispersion of surface drifters in a coastal sea near offshore wind farms}, year={2019}, howpublished = {journal article}, doi = {https://doi.org/10.5194/os-15-865-2019}, abstract = {We analyse relative dispersion of surface drifters released as pairs (6 instances) or triplets (2 instances) during three field experiments in the German Bight in close proximity to wind farms. Drifter pairs can be classified in a remarkably clear way into those with spatial separation growing either exponentially or non-monotonously. There is some tentative evidence that exponential relative dispersion growth rates preferably occur for drifter pairs that are most exposed to the possible influence of a wind farm. Kinetic energy spectra and velocity structure functions suggest that turbulent energy could be injected by tides, possibly also via an interaction between tidal currents and wind turbine towers. Applicability of inertial range turbulence theory, however, can be doubted given distinct peaks of overtides observed in velocity power spectra. More comprehensive studies would be needed to better separate submesoscale effects of wind farms, tides and possibly baroclinic instabilities on observed drifter behaviour in a complex coastal environment.}, note = {Online available at: \url{https://doi.org/10.5194/os-15-865-2019} (DOI). Callies, U.; Carrasco, R.; Floeter, J.; Horstmann, J.; Quante, M.: Submesoscale dispersion of surface drifters in a coastal sea near offshore wind farms. Ocean Science. 2019. vol. 15, no. 4, 865-889. DOI: 10.5194/os-15-865-2019}} @misc{horwitz_highfrequency_variability_2019, author={Horwitz, R.,Hay, A.,Burt, W.,Cheel, R.,Salisbury, J.,Thomas, H.}, title={High-frequency variability of CO2 in Grand Passage, Bay of Fundy, Nova Scotia}, year={2019}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-16-605-2019}, abstract = {Assessing changes in the marine carbon cycle arising from anthropogenic CO2 emissions requires a detailed understanding of the carbonate system's natural variability. Coastal ecosystems vary over short spatial and temporal scales, so their dynamics are not well described by long-term and broad regional averages. A year-long time series of pCO2, temperature, salinity, and currents is used to quantify the high-frequency variability of the carbonate system at the mouth of the Bay of Fundy, Nova Scotia. The seasonal cycle of pCO2 is modulated by a diel cycle that is larger in summer than in winter and a tidal contribution that is primarily M2, with amplitude roughly half that of the diel cycle throughout the year. The interaction between tidal currents and carbonate system variables leads to lateral transport by tidal pumping, which moves alkalinity and dissolved inorganic carbon (DIC) out of the bay, opposite to the mean flow in the region, and constitutes a new feature of how this strongly tidal region connects to the larger Gulf of Maine and northwest Atlantic carbon system. These results suggest that tidal pumping could substantially modulate the coastal ocean's response to global ocean acidification in any region with large tides and spatial variation in biological activity, requiring that high-frequency variability be accounted for in assessments of carbon budgets of coastal regions.}, note = {Online available at: \url{https://doi.org/10.5194/bg-16-605-2019} (DOI). Horwitz, R.; Hay, A.; Burt, W.; Cheel, R.; Salisbury, J.; Thomas, H.: High-frequency variability of CO2 in Grand Passage, Bay of Fundy, Nova Scotia. Biogeosciences. 2019. vol. 16, no. 2, 605-616. DOI: 10.5194/bg-16-605-2019}} @misc{rixen_the_monsoon_2019, author={Rixen, T.,Gaye, B.,Emeis, K.}, title={The monsoon, carbon fluxes, and the organic carbon pump in the northern Indian Ocean}, year={2019}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.pocean.2019.03.001}, abstract = {Time series sediment trap experiments were carried out at fifteen sites in the northern Indian Ocean between 1986 and 2007. The data on particle flux rates and composition are analyzed in combination with satellite-derived estimates of primary production and results of surface ocean studies during the Joint Global Ocean Flux Study in the Arabian Sea (JGOFS-Indik). The data highlight the influence of the monsoon on the transport of organic carbon into the deep sea and the associated functioning of the organic carbon pump.,The results illustrate the well-known concept of export production, which is driven by inputs of nutrients from the aphotic zone and external reservoirs (the atmosphere and the land) into the euphotic zone. The monsoon drives the organic carbon export through its impact on the physical nutrient supply mechanisms, such as upwelling, vertical mixing, and river discharges. Eolian dust and especially riverine supply of lithogenic matter increase organic carbon fluxes by accelerating the transport of organic matter into the deep sea. Nevertheless, it is preferentially respired in the sub-thermocline and the resulting trapping of remineralized nutrients at this water-depth enforces the influence of upwelling and vertical mixing on the organic carbon fluxes which in the northern Indian Ocean are among the highest worldwide.,Model experiments and measured organic carbon burial rates indicate that a weakening of the summer monsoon strength hardly affected the long-term annual average organic carbon export flux into the deep sea during the last approximately 7000 years. In addition to the summer and winter monsoon strength, which are assumed to be inversely related to each other, monsoon-driven physical impacts on the nutrient trapping efficiency seem to have kept organic carbon fluxes at a high level. A feedback mechanism caused by negative impacts of oxygen concentrations on the respiration and thus nutrient trapping efficiency apparently prevents the development of anoxia to the point where sulfate reduction occurs and sets an upper limit to organic carbon fluxes. Whether changes in the phytoplankton community structure observed in recent decades indicate that this self-regulating system is becoming unstable is open to question.}, note = {Online available at: \url{https://doi.org/10.1016/j.pocean.2019.03.001} (DOI). Rixen, T.; Gaye, B.; Emeis, K.: The monsoon, carbon fluxes, and the organic carbon pump in the northern Indian Ocean. Progress in Oceanography. 2019. vol. 175, 24-39. DOI: 10.1016/j.pocean.2019.03.001}} @misc{callies_stroemungen_in_2019, author={Callies, U.,Kleeberg, U.}, title={Stroemungen in der Deutschen Bucht - Zur Bedeutung mariner Transporte}, year={2019}, howpublished = {journal article}, abstract = {Eine detaillierte Kenntnis mariner Transporte ist für viele Analysen und praktische Problemlösungen von großer Bedeutung. Abhängig von der jeweiligen Fragestellung können sich dabei die relevanten Zeitskalen stark unterscheiden: Müssen etwa Schiffsbrüchige oder von Bord gefallene Gegenstände lokalisiert werden, so sind Entwicklungen über Stunden bis Tage von Interesse. Andererseits würden Ökosystemforscher, die etwa an Mustern der Larvenverdriftung oder Nährstoffkonzentration interessiert sind, eher lange Zeiträume von Monaten oder gar Jahren betrachten. Strömungen beeinflussen die räumlichen Verteilungen aller Wasserinhaltsstoffe, weswegen ihre Kenntnis auch für eine sachgerechte Interpretation lokaler Beobachtungen relevant ist.}, note = {Online available at: \url{} (DOI). Callies, U.; Kleeberg, U.: Stroemungen in der Deutschen Bucht - Zur Bedeutung mariner Transporte. Geographische Rundschau. 2019. no. 4, 34-39.}} @misc{liu_implications_of_2019, author={Liu, Z.,Callies, U.}, title={Implications of using chemical dispersants to combat oil spills in the German Bight – Depiction by means of a Bayesian network}, year={2019}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.envpol.2019.02.063}, abstract = {Application of chemical dispersants is one option for combatting oil spills, dispersing oil into the water column and thereby reducing potential pollution to coastal areas. Efficiency of dispersant application depends on oil characteristics, sea and weather conditions. Potential environmental impacts must also be taken into account. Referring to the German Bight region (North Sea), we show how probabilistic Bayesian network (BN) technology can integrate all these aspects to support contingency planning. Expected effects of chemical dispersion on oil spill drift paths are quantified based on comprehensive numerical ensemble simulations. Ecological impacts are represented just in simplified terms focusing on nearshore seabird distributions. The intuitive and interactive BN summarizes expected benefits from chemical dispersion depending on where and under which weather conditions a hypothetical pollution occurs.}, note = {Online available at: \url{https://doi.org/10.1016/j.envpol.2019.02.063} (DOI). Liu, Z.; Callies, U.: Implications of using chemical dispersants to combat oil spills in the German Bight – Depiction by means of a Bayesian network. Environmental Pollution. 2019. vol. 248, 609-620. DOI: 10.1016/j.envpol.2019.02.063}} @misc{mllernavarra_evolution_of_2019, author={Müller-Navarra, K.,Milker, Y.,Bunzel, D.,Lindhorst, S.,Friedrich, J.,Arz, H.,Schmiedl, G.}, title={Evolution of a salt marsh in the southeastern North Sea region – Anthropogenic and natural forcing}, year={2019}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.ecss.2018.12.022}, abstract = {Salt-marsh sediments of the southeastern North Sea provide an archive to unravel the influences of coastal management and natural processes such as storm-tide deposition on salt-marsh development. We present a record of salt-marsh evolution during the past century from the Bay of Tümlau (northwestern Germany) based on fossil foraminiferal assemblages and sedimentological data. After diking the hinterland of the Bay of Tümlau in 1935 CE and commencing marsh management, the environment at the study site changed from a tidal flat to a salt marsh. Salt-marsh sediment accretion is influenced by recurrent dredging events, as indicated by layers rich in calcareous tidal-flat foraminifera, and redeposition of siliciclastic particles from the surrounding tidal flats during storm tides. The latter fostered the establishment of a typical salt-marsh foraminiferal fauna dominated by the agglutinating species Entzia macrescens. Storm-tide layers have a lighter sediment color and commonly a more negatively skewed grain-size distribution with variable sorting. The observed long-term coarsening of the salt-marsh sediment likely reflects the landward progression of the vertical erosional cliff and the depletion of fine-grained sediment particles in the tidal flats under the influence of sea-level rise. Supra-tidal conditions, resulting from natural protection measures and abandonment of dredging, are indicated by the occurrence of Balticammina pseudomacrescens around 2001 CE. This species is adapted to only occasional submergence during storm tides. The recent increase in elevation is accompanied by establishment of high-marsh vegetation and characterized by a present height of the marsh surface 50 cm above mean high water springs. During the past sixty years, average sediment accretion rates decreased from 18 to 11 mm yr−1 reflecting the maturing of the salt marsh. These rates clearly outpace the recent mean sea-level rise in the southern North Sea demonstrating that the regional salt marshes are still resilient to sea-level rise.}, note = {Online available at: \url{https://doi.org/10.1016/j.ecss.2018.12.022} (DOI). Müller-Navarra, K.; Milker, Y.; Bunzel, D.; Lindhorst, S.; Friedrich, J.; Arz, H.; Schmiedl, G.: Evolution of a salt marsh in the southeastern North Sea region – Anthropogenic and natural forcing. Estuarine, Coastal and Shelf Science. 2019. vol. 218, 268-277. DOI: 10.1016/j.ecss.2018.12.022}} @misc{mellon_foraminifera_trace_2019, author={Mellon, S.,Kienast, M.,Algar, C.,Menocal, P.,Kienast, S.,Marchitto, T.,Moros, M.,Thomas, H.}, title={Foraminifera Trace Anthropogenic CO2 in the NW Atlantic by 1950}, year={2019}, howpublished = {journal article}, doi = {https://doi.org/10.1029/2019GL084965}, abstract = {The Northwest Atlantic is a region of major climate change over the twentieth century, affected by the weakening of the Atlantic meridional overturning circulation. To assess whether the ability of this region to absorb anthropogenic CO2 has been impacted by this change, we present the region's first long‐term carbon isotope (δ13C) time series of fossil foraminifera spanning the past 4,000 years. These records reveal an unprecedented negative δ13C excursion driven by anthropogenic CO2 penetration into the surface ocean, the “Suess effect” signal. This signal (amplitude −0.45‰) emerges in 1950 CE ± 15 with a decrease rate of 0.009 ± 0.001‰/yr. This marine signal is ~30% of the atmospheric Suess effect and emerges over a century later. Based on current estimates of the ratio of δ13CDIC change to dissolved inorganic carbon change and limited constraints on surface ocean residence times, we calculate a mean anthropogenic CO2 uptake rate of 0.6 ± 0.2 μmol/(kg yr) from 1950 to 2005.}, note = {Online available at: \url{https://doi.org/10.1029/2019GL084965} (DOI). Mellon, S.; Kienast, M.; Algar, C.; Menocal, P.; Kienast, S.; Marchitto, T.; Moros, M.; Thomas, H.: Foraminifera Trace Anthropogenic CO2 in the NW Atlantic by 1950. Geophysical Research Letters. 2019. vol. 46, no. 24, 14683-14691. DOI: 10.1029/2019GL084965}} @misc{omar_trends_of_2019, author={Omar, A.,Thomas, H.,Olsen, A.,Becker, M.,Skjelvan, I.,Reverdin, G.}, title={Trends of Ocean Acidification and pCO2 in the Northern North Sea, 2003–2015}, year={2019}, howpublished = {journal article}, doi = {https://doi.org/10.1029/2018JG004992}, abstract = {For continental shelf regions, the long‐term trend in sea surface carbon dioxide (CO2) partial pressure (pCO2) and rates of ocean acidification are not accurately known. Here, we investigate the decadal trend of observed wintertime pCO2 as well as computed wintertime pH and aragonite saturation state (Ωar) in the northern North Sea, using the first decade long monthly underway data from a voluntary observing ship covering the period 2004–2015. We also evaluate how seawater CO2 chemistry, in response to physical and biological processes, drives variations in the above parameters on seasonal and interannual timescales.,In the northern North Sea, pCO2, pH, and Ωar are subject to strong seasonal variations with mean wintertime values of 375 ± 11 μatm, 8.17 ± 0.01, and 1.96 ± 0.05. Dissolved inorganic carbon is found to be the primary driver of both seasonal and interannual changes while total alkalinity and sea surface temperature have secondary effects that reduce the changes produced by dissolved inorganic carbon. Average interannual variations during winter are around 3%, 0.1%, and 2% for pCO2, pH, and Ωar, respectively and slightly larger in the eastern part of the study area (Skagerrak region) than in the western part (North Atlantic Water region). Statistically significant long‐term trends were found only in the North Atlantic Water region with mean annual rates of 2.39 ± 0.58 μatm/year, −0.0024 ± 0.001 year‐1, and −0.010 ± 0.003 year‐1 for pCO2, pH, and Ωar, respectively. The drivers of the observed trends as well as reasons for the lack of statistically significant trends in the Skagerrak region are discussed.}, note = {Online available at: \url{https://doi.org/10.1029/2018JG004992} (DOI). Omar, A.; Thomas, H.; Olsen, A.; Becker, M.; Skjelvan, I.; Reverdin, G.: Trends of Ocean Acidification and pCO2 in the Northern North Sea, 2003–2015. Journal of Geophysical Research : Biogeosciences. 2019. vol. 124, no. 10, 3088-3103. DOI: 10.1029/2018JG004992}} @misc{wrede_macrofaunal_irrigation_2019, author={Wrede, A.,Andresen, H.,Asmus, R.,Wiltshire, K.,Brey, T.}, title={Macrofaunal irrigation traits enhance predictability of nutrient fluxes across the sediment-water interface}, year={2019}, howpublished = {journal article}, doi = {https://doi.org/10.3354/meps13165}, abstract = {This study shows that macrofaunal irrigation traits constitute a valuable complement to sediment reworking traits in estimating macrofaunal impact on nutrient fluxes across the sediment-water interface. We correlated density, biomass, community bioturbation potential (BPc, an index based on reworking traits, body mass and density) and community irrigation potential (IPc, an index based on irrigation traits, body mass and density) with nitrite, nitrate, ammonium, silicate and phosphate flux data under different environmental conditions. Generalized linear models performed best with a combination of environmental conditions and irrigation trait-based indices. This was not only a direct effect of the irrigation traits, but also of the scaling factor 0.75 employed in IPc to infer metabolic activity from body mass. Accordingly, predictive models of nutrient flux across the sediment-water interface will profit greatly from incorporating macrofaunal irrigation behaviour by means of trait-based indices.}, note = {Online available at: \url{https://doi.org/10.3354/meps13165} (DOI). Wrede, A.; Andresen, H.; Asmus, R.; Wiltshire, K.; Brey, T.: Macrofaunal irrigation traits enhance predictability of nutrient fluxes across the sediment-water interface. Marine Ecology Progress Series. 2019. vol. 672, 27-42. DOI: 10.3354/meps13165}} @misc{tim_analysis_of_2019, author={Tim, N.,Zorita, E.,Emeis, K.,Schwarzkopf, F.,Biastoch, A.,Hünicke, B.}, title={Analysis of the position and strength of westerlies and trades with implications for Agulhas leakage and South Benguela upwelling}, year={2019}, howpublished = {journal article}, doi = {https://doi.org/10.5194/esd-10-847-2019}, abstract = {The westerlies and trade winds over the South Atlantic and Indian Ocean are important drivers of the regional oceanography around southern Africa, including features such as the Agulhas Current, the Agulhas leakage, and the Benguela upwelling. Agulhas leakage constitutes a fraction of warm and saline water transport from the Indian Ocean into the South Atlantic. The leakage is stronger during intensified westerlies. Here, we analyze the wind stress of different observational and modeled atmospheric data sets (covering the last 2 millennia, the recent decades, and the 21st century) with regard to the intensity and position of the southeasterly trades and the westerlies. The analysis reveals that variations of both wind systems go hand in hand and that a poleward shift of the westerlies and trades and an intensification of westerlies took place during the recent decades. Furthermore, upwelling in South Benguela is slightly intensified when trades are shifted poleward. Projections for strength and position of the westerlies in the 21st century depend on assumed CO2 emissions and on their effect relative to the ozone forcing. In the strongest emission scenario (RCP8.5) the simulations show a further southward displacement, whereas in the weakest emission scenario (RCP2.6) a northward shift is modeled, possibly due to the effect of ozone recovery dominating the effect of anthropogenic greenhouse forcing. We conclude that the Agulhas leakage has intensified during the last decades and is projected to increase if greenhouse gas emissions are not reduced. This will have a small impact on Benguela upwelling strength and may also have consequences for water mass characteristics in the upwelling region. An increased contribution of Agulhas water to the upwelling water masses will import more preformed nutrients and oxygen into the upwelling region.}, note = {Online available at: \url{https://doi.org/10.5194/esd-10-847-2019} (DOI). Tim, N.; Zorita, E.; Emeis, K.; Schwarzkopf, F.; Biastoch, A.; Hünicke, B.: Analysis of the position and strength of westerlies and trades with implications for Agulhas leakage and South Benguela upwelling. Earth System Dynamics. 2019. vol. 10, no. 4, 847-858. DOI: 10.5194/esd-10-847-2019}} @misc{rocamarti_distribution_of_2018, author={Roca-Marti, M.,Puigcorbe, V.,Friedrich, J.,Loeff, M.R.van der,Rabe, B.,Korhonen, M.,Camara-Mor, P.,Garcia-Orellana, J.,Masque, P.}, title={Distribution of 210Pb and 210Po in the Arctic water column during the 2007 sea-ice minimum: Particle export in the ice-covered basins}, year={2018}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.dsr.2018.09.011}, abstract = {210Pb and 210Po are naturally occurring radionuclides that are commonly used as a proxy for particle and carbon export. In this study, the distribution of the 210Po/210Pb pair was investigated in the water column of the Barents, Kara and Laptev Seas and the Nansen, Amundsen and Makarov Basins in order to understand the particle dynamics in the Arctic Ocean during the 2007 sea-ice minimum (August–September). Minimum activities of total 210Pb and 210Po were found in the upper and lower haloclines (approx. 60–130 m), which are partly attributed to particle scavenging over the shelves, boundary current transport and subsequent advection of the water with low 210Pb and 210Po activities into the central Arctic. Widespread and substantial (> 50%) deficits of 210Po with respect to 210Pb were detected from surface waters to 200 m on the shelves, but also in the basins. This was particularly important in the Makarov Basin where, despite very low chlorophyll-a levels, estimates of annual new primary production were three times higher than in the Eurasian Basin. In the Nansen, Amundsen and Makarov Basins, estimates of annual new primary production correlated with the deficits of 210Po in the upper 200 m of the water column, suggesting that in situ production and subsequent export of biogenic material were the mechanisms that controlled the removal of 210Po in the central Arctic. Unlike 210Po, 234Th deficits measured during the same expedition were found to be very small and not significant below 25 m in the basins (Cai et al., 2010), which indicates, given the shorter half-life of 234Th, that particle export fluxes in the central Arctic would have been higher before July–August in 2007 than later in the season.}, note = {Online available at: \url{https://doi.org/10.1016/j.dsr.2018.09.011} (DOI). Roca-Marti, M.; Puigcorbe, V.; Friedrich, J.; Loeff, M.; Rabe, B.; Korhonen, M.; Camara-Mor, P.; Garcia-Orellana, J.; Masque, P.: Distribution of 210Pb and 210Po in the Arctic water column during the 2007 sea-ice minimum: Particle export in the ice-covered basins. Deep-Sea Research Part I. 2018. vol. 142, 94-106. DOI: 10.1016/j.dsr.2018.09.011}} @misc{bradley_advancing_integrated_2018, author={Bradley, C.,Bowes, M.J.,Brils, J.,Friedrich, J.,Gault, J.,Groom, S.,Hein, T.,Heininger, P.,Michalopoulos, P.,Panin, N.,Schultz, M.,Stanica, A.,Andrei, I.,Tyler, A.,Umgiesser, G.}, title={Advancing integrated research on European river–sea systems: the DANUBIUS-RI project}, year={2018}, howpublished = {journal article}, doi = {https://doi.org/10.1080/07900627.2017.1399107}, abstract = {Research at the interface between terrestrial, riverine, estuarine and marine environments is frequently constrained by significant disciplinary and geographical boundaries. This article outlines an international initiative, DANUBIUS-RI, which aims to address these problems by facilitating biogeochemical monitoring and interdisciplinary research on river–sea systems. The scope of the project spans the environmental, social and economic sciences and was accepted into the European Strategy Forum on Research Infrastructures roadmap in 2016. When operational, DANUBIUS-RI will offer researchers access to interdisciplinary expertise, facilities and European river–sea systems, providing a comprehensive platform for multidisciplinary research and training.}, note = {Online available at: \url{https://doi.org/10.1080/07900627.2017.1399107} (DOI). Bradley, C.; Bowes, M.; Brils, J.; Friedrich, J.; Gault, J.; Groom, S.; Hein, T.; Heininger, P.; Michalopoulos, P.; Panin, N.; Schultz, M.; Stanica, A.; Andrei, I.; Tyler, A.; Umgiesser, G.: Advancing integrated research on European river–sea systems: the DANUBIUS-RI project. International Journal of Water Resources Development. 2018. vol. 34, no. 6, 888-899. DOI: 10.1080/07900627.2017.1399107}} @misc{cormier_the_sciencepolicy_2018, author={Cormier, R.,Stelzenmueller, V.,Creed, I.F.,Igras, J.,Rambo, H.,Callies, U.,Johnson, L.B.}, title={The science-policy interface of risk-based freshwater and marine management systems: From concepts to practical tools}, year={2018}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.jenvman.2018.08.053}, abstract = {Maintaining the current state of ecosystem services from freshwater and marine ecosystems around the world is at risk. Cumulative effects of multiple human pressures on ecosystem components and functions are indicative of residual pressures that “fall through” the cracks of current industry sector management practices. Without an understanding of the level of residual pressures generated by these measures, we are unlikely to reconcile the root causes of ecosystem effects to improve these management practices to reduce their residual pressures. In this paper, we present a new modelling framework that combines a qualitative and quantitative assessments of the effectiveness of the measures used in the daily operations of industry sectors to predict their residual pressure that is delivered to the ecosystem. The predicted residual pressure can subsequently be used as an input variable for ecosystem models. We combine the Bow-tie analysis of the measures with a Bayesian belief network to quantify the effectiveness of the measures and predict the residual pressures.}, note = {Online available at: \url{https://doi.org/10.1016/j.jenvman.2018.08.053} (DOI). Cormier, R.; Stelzenmueller, V.; Creed, I.; Igras, J.; Rambo, H.; Callies, U.; Johnson, L.: The science-policy interface of risk-based freshwater and marine management systems: From concepts to practical tools. Journal of Environmental Management. 2018. vol. 226, 340-346. DOI: 10.1016/j.jenvman.2018.08.053}} @misc{sanders_the_distribution_2018, author={Sanders, T.,Laanbroek, H.J.}, title={The distribution of sediment and water column nitrification potential in the hyper-turbid Ems estuary}, year={2018}, howpublished = {journal article}, doi = {https://doi.org/10.1007/s00027-018-0584-1}, abstract = {Estuaries, being transition zones between land and ocean, act as sink or source of nitrate and thus influence the conditions in adjacent coastal waters. Hence, nitrification, which is the process oxidizing ammonium via nitrite to nitrate and simultaneously consuming oxygen, is important in estuaries. The process has been studied in sediment and water column of many estuaries, but seldom in both estuarine compartments at the same time. In August 2014, we collected water and sediment samples during a sampling trip along the salinity gradient of the hyper-turbid Ems estuary, which ends up in the North Sea. We conducted nitrification incubations in microcosms to determine nitrification potentials and we measured a suite of abiotic factors like oxygen saturation, salinity, and dissolved inorganic nitrogen (DIN). Two approaches were used, one isotope dilution method for net (NNP) and gross (GNP) nitrification potentials and one method with substrate addition for substrate induced nitrification potentials (SNP). The long-term incubation set-ups of several days include inseparably nitrification-coupled processes like remineralization and nitrate consumption, as well as cell growth, and hence they do not represent in-situ rates of nitrification. DNA was also isolated and used for quantitative PCR of the archaeal and bacterial amoA genes, which encode for the ammonia-oxidizing enzyme ammonia monooxygenase (AMO). Nitrification varied over the salinity gradient of the estuary. GNP in water and sediments decreased with increasing salinity. No NNP could be measured in the sediments of the oligohaline part of the estuary, while SNP was four-fold higher than GNP in this part of the estuary. Generally, the gene abundance of the amoA gene was higher in the oligohaline/mesohaline area than in the polyhaline area, and archaea dominated the ammonia-oxidizing communities in all samples. The local similarity in partitioning of archaeal and bacterial amoA genes over the water column and sediment at each sampling station along the estuarine gradient implied a link between the archaeal and bacterial ammonia oxidizers in both compartments, which is likely due to resuspension of sediment particles in the water column of this hyper-turbid estuary.}, note = {Online available at: \url{https://doi.org/10.1007/s00027-018-0584-1} (DOI). Sanders, T.; Laanbroek, H.: The distribution of sediment and water column nitrification potential in the hyper-turbid Ems estuary. Aquatic Sciences / Research Across Boundaries. 2018. vol. 80, 33. DOI: 10.1007/s00027-018-0584-1}} @misc{neumann_the_bivalve_2018, author={Neumann, A.,Flohr, A.}, title={The bivalve Lembulus bicuspidatus may enhance denitrification in shelf sediment at the Angola–Benguela Frontal Zone}, year={2018}, howpublished = {journal article}, doi = {https://doi.org/10.2989/1814232X.2018.1437774}, abstract = {We collected living individuals of the bivalve Lembulus bicuspidatus, which shows an unusual preference for the oxygen-deficient habitat found at the Angola–Benguela Frontal Zone of the southeastern Atlantic. With a series of incubation experiments with 15N-labelled nitrate as a tracer in combination with membrane-inlet mass spectrometry, we studied the potential contribution of L. bicuspidatus to nitrate reduction in the upper sediment layer. Our preliminary results suggest that L. bicuspidatus enhances nitrate reduction if the oxygen concentration is sufficiently low. The Lembulus-mediated nitrate reduction rate is then similar to the rate of microbial nitrate reduction in the surrounding sediment.}, note = {Online available at: \url{https://doi.org/10.2989/1814232X.2018.1437774} (DOI). Neumann, A.; Flohr, A.: The bivalve Lembulus bicuspidatus may enhance denitrification in shelf sediment at the Angola–Benguela Frontal Zone. African Journal of Marine Science. 2018. vol. 40, no. 1, 91-96. DOI: 10.2989/1814232X.2018.1437774}} @misc{brase_anthropogenic_changes_2018, author={Brase, L.,Sanders, T.,Daehnke, K.}, title={Anthropogenic changes of nitrogen loads in a small river: external nutrient sources vs. internal turnover processes}, year={2018}, howpublished = {journal article}, doi = {https://doi.org/10.1080/10256016.2018.1428580}, abstract = {Anthropogenic nutrient inputs increase the N-load in many aquatic systems, leading to eutrophication and potential changes of biological N-retention capacity. In this study, nitrate inputs in a small river were investigated along a gradient of anthropogenic influence. We aimed to determine changes in nitrate load and isotope signatures in the water column and to identify the anthropogenic influence on biological nitrogen assimilation and nitrification or denitrification in sediments. In seasonal sampling campaigns, we analysed dissolved inorganic nitrogen concentrations, and stable isotopes of nitrate. To differentiate rates of nitrate production and consumption in the pristine vs. agricultural river section, intact sediment cores were incubated with 15N-labelled nitrate. δ15N values of nitrate in the pristine river section were low, reflecting natural sources, but, as expected, increased with nitrate concentration in all seasons along the gradient. In general, nitrate retention and consumption were higher in the anthropogenically impacted than in the pristine river section, and nitrate consumption exceeded production. In addition to our measurements, modelled results also show that even in a small river, the anthropogenically enhanced consumption capacity is overwhelmed by surplus N-inputs, and nitrate consumption cannot increase in turn with external loads.}, note = {Online available at: \url{https://doi.org/10.1080/10256016.2018.1428580} (DOI). Brase, L.; Sanders, T.; Daehnke, K.: Anthropogenic changes of nitrogen loads in a small river: external nutrient sources vs. internal turnover processes. Isotopes in Environmental and Health Studies. 2018. vol. 54, no. 2, 168-184. DOI: 10.1080/10256016.2018.1428580}} @misc{bockelmann_mapping_mud_2018, author={Bockelmann, F.-D.,Puls, W.,Kleeberg, U.,Mueller, D.,Emeis, K.-C.}, title={Mapping mud content and median grain-size of North Sea sediments – A geostatistical approach}, year={2018}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.margeo.2017.11.003}, abstract = {Sediment grain size is well known for its influence on biogeophysical processes and hence, grain size parameter maps, important elements in an integrated ecological modelling strategy. In this study, a large database was compiled from legacy data on grain size parameters and distributions in North Sea surface sediments. The database was analysed by means of non-linear regression to enable a consistent quantification of various grain size parameters. In a second step, multivariate geostatistics (kriging) were employed to predict the spatial distribution of percentage mud content and median grain size in the North Sea with a resolution of 1 × 1 nautical miles. The results show that incorporation of secondary information in the interpolation led to a physically more realistic representation of large-scale patterns compared to deterministic approaches. An evaluation of map confidence, however, suggests only minor differences in the quality obtained by different kriging techniques. It appears that the data density and distribution are not an issue when it comes to performance. Instead, insufficient metadata constrain the assessment and harmonisation of data sets and introduce uncertainty into the predictions.}, note = {Online available at: \url{https://doi.org/10.1016/j.margeo.2017.11.003} (DOI). Bockelmann, F.; Puls, W.; Kleeberg, U.; Mueller, D.; Emeis, K.: Mapping mud content and median grain-size of North Sea sediments – A geostatistical approach. Marine Geology. 2018. vol. 397, 60-71. DOI: 10.1016/j.margeo.2017.11.003}} @misc{grote_the_potential_2018, author={Grote, M.,Bernem, C.van,Boehme, B.,Callies, U.,Calvez, I.,Christie, B.,Colcomb, K.,Damian, H.-P.,Farke, H.,Graebsch, C.,Hunt, A.,Hoefer, T.,Knaack, J.,Kraus, U.,Le Floch, S.,Le Lann, G.,Leuchs, H.,Nagel, A.,Nies, H.,Nordhausen, W.,Rauterberg, J.,Reichenbach, D.,Scheiffarth, G.,Schwichtenberg, F.,Theobald, N.,Voß, J.,Wahrendorf, D.-S.}, title={The potential for dispersant use as a maritime oil spill response measure in German waters}, year={2018}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.marpolbul.2017.10.050}, abstract = {In case of an oil spill, dispersant application represents a response option, which enhances the natural dispersion of oil and thus reduces coating of seabirds and coastal areas. However, as oil is transferred to the water phase, a trade-off of potential harmful effects shifted to other compartments must be performed. This paper summarizes the results of a workshop on the current knowledge on risks and benefits of the use of dispersants with respect to specific conditions encountered at the German sea areas. The German North Sea coast is a sensitive ecosystem characterised by tidal flats, barrier islands and salt marshes. Many prerequisites for a potential integration of dispersants as spill response option are available in Germany, including sensitivity maps and tools for drift modelling of dispersed and undispersed oil. However, open scientific questions remain concerning the persistence of dispersed oil trapped in the sediments and potential health effects.}, note = {Online available at: \url{https://doi.org/10.1016/j.marpolbul.2017.10.050} (DOI). Grote, M.; Bernem, C.; Boehme, B.; Callies, U.; Calvez, I.; Christie, B.; Colcomb, K.; Damian, H.; Farke, H.; Graebsch, C.; Hunt, A.; Hoefer, T.; Knaack, J.; Kraus, U.; Le Floch, S.; Le Lann, G.; Leuchs, H.; Nagel, A.; Nies, H.; Nordhausen, W.; Rauterberg, J.; Reichenbach, D.; Scheiffarth, G.; Schwichtenberg, F.; Theobald, N.; Voß, J.; Wahrendorf, D.: The potential for dispersant use as a maritime oil spill response measure in German waters. Marine Pollution Bulletin. 2018. vol. 129, no. 2, 623-632. DOI: 10.1016/j.marpolbul.2017.10.050}} @misc{sanders_hot_spots_2018, author={Sanders, T.,Schoel, A.,Daehnke, K.}, title={Hot spots of nitrification in the Elbe Estuary and their impact on nitrate regeneration}, year={2018}, howpublished = {journal article}, doi = {https://doi.org/10.1007/s12237-017-0264-8}, abstract = {Estuaries act as an organic matter and nutrient filter in the transition between the land, rivers and the ocean. In the past, high nutrient and organic carbon load and low oxygen concentration made the Elbe River estuary (NW Europe) a sink for dissolved inorganic nitrogen. A recent reduction in loads and subsequent recovery of the estuary changed its biogeochemical function, so that nitrate is no longer removed on its transition towards the coastal North Sea. Nowadays in the estuary, nitrification appears to be a significant nitrate source. To quantify nitrification and determine actively nitrifying regions in the estuary, we measured the concentrations of ammonium, nitrite and nitrate, the dual stable isotopes of nitrate and net nitrification rates in the estuary on five cruises from August 2012 to August 2013. The nitrate concentration increased markedly downstream of the port of Hamburg in summer and spring, accompanied by a decrease of nitrate isotope values that was clearest in summer exactly at the location where nitrate concentration started to increase. Ammonium and nitrite peaked in the Hamburg port region (up to 18 and 8 μmol L−1, respectively), and nitrification rates in this region were up to 7 μmol L−1 day−1. Our data show that coupled re-mineralization and nitrification are significant internal nitrate sources that almost double the estuary’s summer nitrate concentration. Furthermore, we find that the port of Hamburg is a hot spot of nitrification, whereas the maximum turbidity zone (MTZ) only plays a subordinate role in turnover of nitrate.}, note = {Online available at: \url{https://doi.org/10.1007/s12237-017-0264-8} (DOI). Sanders, T.; Schoel, A.; Daehnke, K.: Hot spots of nitrification in the Elbe Estuary and their impact on nitrate regeneration. Estuaries and Coasts. 2018. vol. 41, no. 1, 128-138. DOI: 10.1007/s12237-017-0264-8}} @misc{emeis_biogeochemical_processes_2018, author={Emeis, K.,Eggert, A.,Flohr, A.,Lahajnar, N.,Nausch, G.,Neumann, A.,Rixen, T.,Schmidt, A.,Van der Plas, A.,Wasmund, N.}, title={Biogeochemical processes and turnover rates in the Northern Benguela Upwelling System}, year={2018}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.jmarsys.2017.10.001}, abstract = {Biogeochemical cycles of carbon, nutrients, and oxygen transmit mean states, trends and variations of the physical realm in coastal upwelling systems to their food webs and determine their role in regional budgets of greenhouse gases. This contribution focuses on biogeochemical processes in the northern Benguela Upwelling System (NBUS), where low oxygen levels in upwelling source water are a major influence on carbon and nutrient cycles. Based on measurements during numerous expeditions and results of 3-D regional ecosystem modeling (project GENUS; Geochemistry and Ecology of the Namibian Upwelling System) we here examine source water character, effects of low oxygen conditions on nutrient masses and ratios, and of diazotrophic N2-fixation on productivity of the system and its transition to the adjacent eastern South Atlantic. In available observations, the effects of denitrification in water and sediment and phosphate release from sediments are minor influences on nitrate:phosphate ratios of the system, and excess phosphate in aged upwelling water is inherited from upwelling source water. Contrary to expectation and model results, the low N:P ratios do not trigger diazotrophic N2-fixation in the fringes of the upwelling system, possibly due to a lack of seeding populations of Trichodesmium. We also examine the flux of carbon from the sea surface to either sediment, the adjacent sub-thermocline ocean, or to regenerated nutrients and CO2. Observed fluxes out of the surface mixed layer are significantly below modeled fluxes, and suggest that regeneration of nutrients and CO2 is unusually intense in the mixed layer. This contributes to very high fluxes of CO2 from the ocean to the regional atmosphere, which is not compensated for by N2-fixation. Based on observations, the NBUS thus is a significant net CO2 source (estimated at 14.8 Tg C a− 1), whereas the CO2 balance is closed by N2-fixation in the model. Methane concentrations were low in surface waters in on-line measurements during 1 expedition, and based on these our estimate for the emission of methane for the entire Benguela system is below 0.2 Tg CH4 a− 1.}, note = {Online available at: \url{https://doi.org/10.1016/j.jmarsys.2017.10.001} (DOI). Emeis, K.; Eggert, A.; Flohr, A.; Lahajnar, N.; Nausch, G.; Neumann, A.; Rixen, T.; Schmidt, A.; Van der Plas, A.; Wasmund, N.: Biogeochemical processes and turnover rates in the Northern Benguela Upwelling System. Journal of Marine Systems. 2018. vol. 188, 63-80. DOI: 10.1016/j.jmarsys.2017.10.001}} @misc{li_spatial_distribution_2018, author={Li, J.,Tang, J.,Mi, W.,Tian, C.,Emeis, K.,Ebinghaus, R.,Xie, Z.}, title={Spatial Distribution and Seasonal Variation of Organophosphate Esters in Air above the Bohai and Yellow Seas; China}, year={2018}, howpublished = {journal article}, doi = {https://doi.org/10.1021/acs.est.7b03807}, abstract = {Nine organophosphate esters (OPEs) were investigated in air samples collected over the Bohai and Yellow Seas (East Asia) during a research cruise between June 28 and July 13, 2016. These same OPEs were quantified at a research site (North Huangcheng Island, NHI) in the middle of the Bohai Strait from May 16, 2015, to March 21, 2016. The median total OPE (ΣOPE) concentration over the Bohai and Yellow Seas was 280 pg/m3. Tris(1-chloro-2-propyl) (TCPP) was the most abundant OPE, followed by tris(2-chloroethyl) phosphate (TCEP), tri-iso-butyl phosphate (TiBP), and tri-n-butyl phosphate (TnBP). Particle-bound OPEs accounted for 51 ± 21% of the total OPEs. On NHI, the median ΣOPE concentration was 210 pg/m3, and the average particle-bound fraction was 82 ± 17%. For samples collected on NHI, significant negative linear correlations were found between the gaseous OPEs and 1/T (T: temperature (K)) (except TDCP, TPeP, and TCP). Among the 79 investigated samples, significant correlations between the measured OPE gas/particle partitioning coefficients (Kp,m) and subcooled liquid pressure (PL◦) (p < 0.05) were found for only 14 samples, suggesting that OPEs have low potential to achieve equilibrium or ascribe to the artificial sampling. The annual dry deposition input of OPEs into the Bohai and Yellow Seas is estimated to be 12 tons/year.}, note = {Online available at: \url{https://doi.org/10.1021/acs.est.7b03807} (DOI). Li, J.; Tang, J.; Mi, W.; Tian, C.; Emeis, K.; Ebinghaus, R.; Xie, Z.: Spatial Distribution and Seasonal Variation of Organophosphate Esters in Air above the Bohai and Yellow Seas; China. Environmental Science and Technology. 2018. vol. 52, no. 1, 89-97. DOI: 10.1021/acs.est.7b03807}} @misc{vorrath_spatiotemporal_variation_2018, author={Vorrath, M.,Lahajnar, N.,Fischer, G.,Libuku, V.,Schmidt, M.,Emeis, K.}, title={Spatiotemporal variation of vertical particle fluxes and modelled chlorophyll a standing stocks in the Benguela Upwelling System}, year={2018}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.jmarsys.2017.12.002}, abstract = {Marine particle fluxes from high productive coastal upwelling systems return upwelled CO2 and nutrients to the deep ocean and sediments and have a substantial impact on the global carbon cycle. This study examines relations between production regimes on the shelf and over the continental margin of the Benguela Upwelling System (BUS) in the SE Atlantic Ocean. Data of composition and timing of vertical particle flux come from sediment trap time series (deployed intermittently between 1988 and 2014) in the regions Walvis Ridge, Walvis Bay, Luederitz and Orange River. We compare their seasonal variability to modelled patterns of chlorophyll concentrations in a 3-D ecosystem model. Both modelled seasonal chlorophyll a standing stocks and sampled particle flux patterns are highly correspondent with a bimodal seasonal cycle offshore the BUS. The material in the particle flux in offshore traps is dominantly carbonate (40–70%), and flux peaks in offshore particle flux originate from two independent events: in austral autumn thermocline shoaling and vertical mixing are decoupled from coastal upwelling, while fluxes in spring coincide with the upwelling season, indicated by slightly elevated biogenic opal values at some locations. Coastal particle fluxes are characterized by a trimodal pattern and are dominated by biogenic opal (22–35%) and organic matter (30–60%). The distinct seasonality in observed fluxes on the shelf is caused by high variability in production, sinking behaviour, wind stress, and hydrodynamic processes. We speculate that global warming will increase ocean stratification and alter coastal upwelling, so that consequences for primary production and particle flux in the BUS are inevitable.}, note = {Online available at: \url{https://doi.org/10.1016/j.jmarsys.2017.12.002} (DOI). Vorrath, M.; Lahajnar, N.; Fischer, G.; Libuku, V.; Schmidt, M.; Emeis, K.: Spatiotemporal variation of vertical particle fluxes and modelled chlorophyll a standing stocks in the Benguela Upwelling System. Journal of Marine Systems. 2018. vol. 180, 59-75. DOI: 10.1016/j.jmarsys.2017.12.002}} @misc{schlitzer_the_geotraces_2018, author={Schlitzer, R.,Anderson, R.F.,Dodas, E.M.,Lohan, M.,Geibert, W.,Tagliabue, A.,Bowie, A.,Jeandel, C.,Maldonado, M.T.,Landing, W.M.,Cockwell, D.,Abadie, C.,Abouchami, W.,Achterberg, E.P.,Agather, A.,Aguliar-Islas, A.,van Aken, H.M.,Andersen, M.,Archer, C.,Auro, M.,de Baar, H.J.,Baars, O.,Baker, A.R.,Bakker, K.,Basak, C.,Baskaran, M.,Bates, N.R.,Bauch, D.,van Beek, P.,Behrens, M.K.,Black, E.,Bluhm, K.,Bopp, L.,Bouman, H.,Bowman, K.,Bown, J.,Boyd, P.,Boye, M.,Boyle, E.A.,Branellec, P.,Bridgestock, L.,Brissebrat, G.,Browning, T.,Bruland, K.W.,Brumsack, H.-J.,Brzezinski, M.,Buck, C.S.,Buck, K.N.,Buesseler, K.,Bull, A.,Butler, E.,Cai, P.,Mor, P.C.,Cardinal, D.,Carlson, C.,Carrasco, G.,Casacuberta, N.,Casciotti, K.L.,Castrillejo, M.,Chamizo, E.,Chance, R.,Charette, M.A.,Chaves, J.E.,Cheng, H.,Chever, F.,Christl, M.,Church, T.M.,Closset, I.,Colman, A.,Conway, T.M.,Cossa, D.,Croot, P.,Cullen, J.T.,Cutter, G.A.,Daniels, C.,Dehairs, F.,Deng, F.,Dieu, H.T.,Duggan, B.,Dulaquais, G.,Dumousseaud, C.,Echegoyen-Sanz, Y.,Edwards, R.L.,Ellwood, M.,Fahrbach, E.,Fitzsimmons, J.N.,Russell Flegal, A.,Fleisher, M.Q.,van de Flierdt, T.,Frank, M.,Friedrich, J.,Fripiat, F.,Fröllje, H.,Galer, S.J.G.,Gamo, T.,Ganeshram, R.S.,Garcia-Orellana, J.,Garcia-Solsona, E.,Gault-Ringold, M.,George, E.,Gerringa, L.J.A.,Gilbert, M.,Godoy, J.M.,Goldstein, S.L.,Gonzalez, S.R.,Grissom, K.,Hammerschmidt, C.,Hartman, A.,Hassler, C.S.,Hathorne, E.C.,Hatta, M.,Hawco, N.,Hayes, C.T.,Heimbürger, L.-E.,Helgoe, J.,Heller, M.,Henderson, G.M.,Henderson, P.B.,van Heuven, S.,Ho, P.,Horner, T.J.,Hsieh, Y.-T.,Huang, K.-F.,Humphreys, M.P.,Isshiki, K.,Jacquot, J.E.,Janssen, D.J.,Jenkins, W.J.,John, S.,Jones, E.M.,Jones, J.L.,Kadko, D.C.,Kayser, R.,Kenna, T.C.,Khondoker, R.,Kim, T.,Kipp, L.,Klar, J.K.,Klunder, M.,Kretschmer, S.,Kumamoto, Y.,Laan, P.,Labatut, M.,Lacan, F.,Lam, P.J.,Lambelet, M.,Lamborg, C.H.,Le Moigne, F.A.C.,Le Roy, E.,Lechtenfeld, O.J.,Lee, J.-M.,Lherminier, P.,Little, S.,López-Lora, M.,Lu, Y.,Masque, P.,Mawji, E.,Mcclain, C.R.,Measures, C.,Mehic, S.,Barraqueta, J.-L.M.,van der Merwe, P.,Middag, R.,Mieruch, S.,Milne, A.,Minami, T.,Moffett, J.W.,Moncoiffe, G.,Moore, W.S.,Morris, P.J.,Morton, P.L.,Nakaguchi, Y.,Nakayama, N.,Niedermiller, J.,Nishioka, J.,Nishiuchi, A.,Noble, A.,Obata, H.,Ober, S.,Ohnemus, D.C.,van Ooijen, J.,O'Sullivan, J.,Owens, S.,Pahnke, K.,Paul, M.,Pavia, F.,Pena, L.D.,Peters, B.,Planchon, F.,Planquette, H.,Pradoux, C.,Puigcorbé, V.,Quay, P.,Queroue, F.,Radic, A.,Rauschenberg, S.,Rehkämper, M.,Rember, R.,Remenyi, T.,Resing, J.A.,Rickli, J.,Rigaud, S.,Rijkenberg, M.J.A.,Rintoul, S.,Robinson, L.F.,Roca-Martí, M.,Rodellas, V.,Roeske, T.,Rolison, J.M.,Rosenberg, M.,Roshan, S.,Rutgers van der Loeff, M.M.,Ryabenko, E.,Saito, M.A.,Salt, L.A.,Sanial, V.,Sarthou, G.,Schallenberg, C.,Schauer, U.,Scher, H.,Schlosser, C.,Schnetger, B.,Scott, P.,Sedwick, P.N.,Semiletov, I.,Shelley, R.,Sherrell, R.M.,Shiller, A.M.,Sigman, D.M.,Singh, S.K.,Slagter, H.A.,Slater, E.,Smethie, W.M.,Snaith, H.,Sohrin, Y.,Sohst, B.,Sonke, J.E.,Speich, S.,Steinfeldt, R.,Stewart, G.,Stichel, T.,Stirling, C.H.,Stutsman, J.,Swarr, G.J.,Swift, J.H.,Thomas, A.,Thorne, K.,Till, C.P.,Till, R.,Townsend, A.T.,Townsend, E.,Tuerena, R.,Twining, B.S.,Vance, D.,Velazquez, S.,Venchiarutti, C.,Villa-Alfageme, M.,Vivancos, S.M.,Voelker, A.H.L.,Wake, B.,Warner, M.J.,Watson, R.,van Weerlee, E.,Alexandra Weigand, M.,Weinstein, Y.,Weiss, D.,Wisotzki, A.,Woodward, E.M.S.,Wu, J.,Wu, Y.,Wuttig, K.,Wyatt, N.,Xiang, Y.,Xie, R.C.,Xue, Z.,Yoshikawa, H.,Zhang, J.,Zhang, P.,Zhao, Y.,Zheng, L.,Zheng, X.-Y.,Zieringer, M.,Zimmer, L.A.,Ziveri, P.,Zunino, P.,Zurbrick, C.}, title={The GEOTRACES Intermediate Data Product 2017}, year={2018}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.chemgeo.2018.05.040}, abstract = {The GEOTRACES Intermediate Data Product 2017 (IDP2017) is the second publicly available data product of the international GEOTRACES programme, and contains data measured and quality controlled before the end of 2016. The IDP2017 includes data from the Atlantic, Pacific, Arctic, Southern and Indian oceans, with about twice the data volume of the previous IDP2014. For the first time, the IDP2017 contains data for a large suite of biogeochemical parameters as well as aerosol and rain data characterising atmospheric trace element and isotope (TEI) sources. The TEI data in the IDP2017 are quality controlled by careful assessment of intercalibration results and multi-laboratory data comparisons at crossover stations. The IDP2017 consists of two parts: (1) a compilation of digital data for more than 450 TEIs as well as standard hydrographic parameters, and (2) the eGEOTRACES Electronic Atlas providing an on-line atlas that includes more than 590 section plots and 130 animated 3D scenes. The digital data are provided in several formats, including ASCII, Excel spreadsheet, netCDF, and Ocean Data View collection. Users can download the full data packages or make their own custom selections with a new on-line data extraction service. In addition to the actual data values, the IDP2017 also contains data quality flags and 1-σ data error values where available. Quality flags and error values are useful for data filtering and for statistical analysis. Metadata about data originators, analytical methods and original publications related to the data are linked in an easily accessible way. The eGEOTRACES Electronic Atlas is the visual representation of the IDP2017 as section plots and rotating 3D scenes. The basin-wide 3D scenes combine data from many cruises and provide quick overviews of large-scale tracer distributions. These 3D scenes provide geographical and bathymetric context that is crucial for the interpretation and assessment of tracer plumes near ocean margins or along ridges. The IDP2017 is the result of a truly international effort involving 326 researchers from 25 countries. This publication provides the critical reference for unpublished data, as well as for studies that make use of a large cross-section of data from the IDP2017.}, note = {Online available at: \url{https://doi.org/10.1016/j.chemgeo.2018.05.040} (DOI). Schlitzer, R.; Anderson, R.; Dodas, E.; Lohan, M.; Geibert, W.; Tagliabue, A.; Bowie, A.; Jeandel, C.; Maldonado, M.; Landing, W.; Cockwell, D.; Abadie, C.; Abouchami, W.; Achterberg, E.; Agather, A.; Aguliar-Islas, A.; van Aken, H.; Andersen, M.; Archer, C.; Auro, M.; de Baar, H.; Baars, O.; Baker, A.; Bakker, K.; Basak, C.; Baskaran, M.; Bates, N.; Bauch, D.; van Beek, P.; Behrens, M.; Black, E.; Bluhm, K.; Bopp, L.; Bouman, H.; Bowman, K.; Bown, J.; Boyd, P.; Boye, M.; Boyle, E.; Branellec, P.; Bridgestock, L.; Brissebrat, G.; Browning, T.; Bruland, K.; Brumsack, H.; Brzezinski, M.; Buck, C.; Buck, K.; Buesseler, K.; Bull, A.; Butler, E.; Cai, P.; Mor, P.; Cardinal, D.; Carlson, C.; Carrasco, G.; Casacuberta, N.; Casciotti, K.; Castrillejo, M.; Chamizo, E.; Chance, R.; Charette, M.; Chaves, J.; Cheng, H.; Chever, F.; Christl, M.; Church, T.; Closset, I.; Colman, A.; Conway, T.; Cossa, D.; Croot, P.; Cullen, J.; Cutter, G.; Daniels, C.; Dehairs, F.; Deng, F.; Dieu, H.; Duggan, B.; Dulaquais, G.; Dumousseaud, C.; Echegoyen-Sanz, Y.; Edwards, R.; Ellwood, M.; Fahrbach, E.; Fitzsimmons, J.; Russell Flegal, A.; Fleisher, M.; van de Flierdt, T.; Frank, M.; Friedrich, J.; Fripiat, F.; Fröllje, H.; Galer, S.; Gamo, T.; Ganeshram, R.; Garcia-Orellana, J.; Garcia-Solsona, E.; Gault-Ringold, M.; George, E.; Gerringa, L.; Gilbert, M.; Godoy, J.; Goldstein, S.; Gonzalez, S.; Grissom, K.; Hammerschmidt, C.; Hartman, A.; Hassler, C.; Hathorne, E.; Hatta, M.; Hawco, N.; Hayes, C.; Heimbürger, L.; Helgoe, J.; Heller, M.; Henderson, G.; Henderson, P.; van Heuven, S.; Ho, P.; Horner, T.; Hsieh, Y.; Huang, K.; Humphreys, M.; Isshiki, K.; Jacquot, J.; Janssen, D.; Jenkins, W.; John, S.; Jones, E.; Jones, J.; Kadko, D.; Kayser, R.; Kenna, T.; Khondoker, R.; Kim, T.; Kipp, L.; Klar, J.; Klunder, M.; Kretschmer, S.; Kumamoto, Y.; Laan, P.; Labatut, M.; Lacan, F.; Lam, P.; Lambelet, M.; Lamborg, C.; Le Moigne, F.; Le Roy, E.; Lechtenfeld, O.; Lee, J.; Lherminier, P.; Little, S.; López-Lora, M.; Lu, Y.; Masque, P.; Mawji, E.; Mcclain, C.; Measures, C.; Mehic, S.; Barraqueta, J.; van der Merwe, P.; Middag, R.; Mieruch, S.; Milne, A.; Minami, T.; Moffett, J.; Moncoiffe, G.; Moore, W.; Morris, P.; Morton, P.; Nakaguchi, Y.; Nakayama, N.; Niedermiller, J.; Nishioka, J.; Nishiuchi, A.; Noble, A.; Obata, H.; Ober, S.; Ohnemus, D.; van Ooijen, J.; O'Sullivan, J.; Owens, S.; Pahnke, K.; Paul, M.; Pavia, F.; Pena, L.; Peters, B.; Planchon, F.; Planquette, H.; Pradoux, C.; Puigcorbé, V.; Quay, P.; Queroue, F.; Radic, A.; Rauschenberg, S.; Rehkämper, M.; Rember, R.; Remenyi, T.; Resing, J.; Rickli, J.; Rigaud, S.; Rijkenberg, M.; Rintoul, S.; Robinson, L.; Roca-Martí, M.; Rodellas, V.; Roeske, T.; Rolison, J.; Rosenberg, M.; Roshan, S.; Rutgers van der Loeff, M.; Ryabenko, E.; Saito, M.; Salt, L.; Sanial, V.; Sarthou, G.; Schallenberg, C.; Schauer, U.; Scher, H.; Schlosser, C.; Schnetger, B.; Scott, P.; Sedwick, P.; Semiletov, I.; Shelley, R.; Sherrell, R.; Shiller, A.; Sigman, D.; Singh, S.; Slagter, H.; Slater, E.; Smethie, W.; Snaith, H.; Sohrin, Y.; Sohst, B.; Sonke, J.; Speich, S.; Steinfeldt, R.; Stewart, G.; Stichel, T.; Stirling, C.; Stutsman, J.; Swarr, G.; Swift, J.; Thomas, A.; Thorne, K.; Till, C.; Till, R.; Townsend, A.; Townsend, E.; Tuerena, R.; Twining, B.; Vance, D.; Velazquez, S.; Venchiarutti, C.; Villa-Alfageme, M.; Vivancos, S.; Voelker, A.; Wake, B.; Warner, M.; Watson, R.; van Weerlee, E.; Alexandra Weigand, M.; Weinstein, Y.; Weiss, D.; Wisotzki, A.; Woodward, E.; Wu, J.; Wu, Y.; Wuttig, K.; Wyatt, N.; Xiang, Y.; Xie, R.; Xue, Z.; Yoshikawa, H.; Zhang, J.; Zhang, P.; Zhao, Y.; Zheng, L.; Zheng, X.; Zieringer, M.; Zimmer, L.; Ziveri, P.; Zunino, P.; Zurbrick, C.: The GEOTRACES Intermediate Data Product 2017. Chemical Geology. 2018. vol. 493, 210-223. DOI: 10.1016/j.chemgeo.2018.05.040}} @misc{hufnagl_variation_that_2017, author={Hufnagl, M.,Payne, M.,Lacroix, G.,Bolle, L.J.,Daewel, U.,Dickey-Collas, M.,Gerkema, T.,Huret, M.,Janssen, F.,Kreus, M.,Paetsch, J.,Pohlmann, T.,Ruardij, P.,Schrum, C.,Skogen, M.D.,Tiessen, M.C.H.,Petitgas, P.,Beek, J.K.L.van,Veer, H.W.van der,Callies, U.}, title={Variation that can be expected when using particle tracking models in connectivity studies}, year={2017}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.seares.2017.04.009}, abstract = {Hydrodynamic Ocean Circulation Models and Lagrangian particle tracking models are valuable tools e.g. in coastal ecology to identify the connectivity between offshore spawning and coastal nursery areas of commercially important fish, for risk assessment and more for defining or evaluating marine protected areas. Most studies are based on only one model and do not provide levels of uncertainty. Here this uncertainty was addressed by applying a suite of 11 North Sea models to test what variability can be expected concerning connectivity. Different notional test cases were calculated related to three important and well-studied North Sea fish species: herring (Clupea harengus), and the flatfishes sole (Solea solea) and plaice (Pleuronectes platessa). For sole and plaice we determined which fraction of particles released in the respective spawning areas would reach a coastal marine protected area. For herring we determined the fraction located in a wind park after a predefined time span. As temperature is more and more a focus especially in biological and global change studies, furthermore inter-model variability in temperatures experienced by the virtual particles was determined. The main focus was on the transport variability originating from the physical models and thus biological behavior was not included. Depending on the scenario, median experienced temperatures differed by 3 °C between years. The range between the different models in one year was comparable to this temperature range observed between modelled years. Connectivity between flatfish spawning areas and the coastal protected area was highly dependent on the release location and spawning time. No particles released in the English Channel in the sole scenario reached the protected area while up to 20% of the particles released in the plaice scenario did. Interannual trends in transport directions and connectivity rates were comparable between models but absolute values displayed high variations. Most models showed systematic biases during all years in comparison to the ensemble median, indicating that in general interannual variation was represented but absolute values varied. In conclusion: variability between models is generally high and management decisions or scientific analysis using absolute values from only one single model might be biased and results or conclusions drawn from such studies need to be treated with caution. We further concluded that more true validation data for particle modelling are required.}, note = {Online available at: \url{https://doi.org/10.1016/j.seares.2017.04.009} (DOI). Hufnagl, M.; Payne, M.; Lacroix, G.; Bolle, L.; Daewel, U.; Dickey-Collas, M.; Gerkema, T.; Huret, M.; Janssen, F.; Kreus, M.; Paetsch, J.; Pohlmann, T.; Ruardij, P.; Schrum, C.; Skogen, M.; Tiessen, M.; Petitgas, P.; Beek, J.; Veer, H.; Callies, U.: Variation that can be expected when using particle tracking models in connectivity studies. Journal of Sea Research. 2017. vol. 127, 133-149. DOI: 10.1016/j.seares.2017.04.009}} @misc{schwichtenberg_effects_of_2017, author={Schwichtenberg, F.,Callies, U.,Groll, N.,Massmann, S.}, title={Effects of chemical dispersants on oil spill drift paths in the German Bight—probabilistic assessment based on numerical ensemble simulations}, year={2017}, howpublished = {journal article}, doi = {https://doi.org/10.1007/s00367-016-0454-6}, abstract = {Oil dispersed in the water column remains sheltered from wind forcing, so that an altered drift path is a key consequence of using chemical dispersants. In this study, ensemble simulations were conducted based on 7 years of simulated atmospheric and marine conditions, evaluating 2,190 hypothetical spills from each of 636 cells of a regular grid covering the inner German Bight (SE North Sea). Each simulation compares two idealized setups assuming either undispersed or fully dispersed oil. Differences are summarized in a spatial map of probabilities that chemical dispersant applications would help prevent oil pollution from entering intertidal coastal areas of the Wadden Sea. High probabilities of success overlap strongly with coastal regions between 10 m and 20 m water depth, where the use of chemical dispersants for oil spill response is a particularly contentious topic. The present study prepares the ground for a more detailed net environmental benefit analysis (NEBA) accounting also for toxic effects.}, note = {Online available at: \url{https://doi.org/10.1007/s00367-016-0454-6} (DOI). Schwichtenberg, F.; Callies, U.; Groll, N.; Massmann, S.: Effects of chemical dispersants on oil spill drift paths in the German Bight—probabilistic assessment based on numerical ensemble simulations. Geo-Marine Letters. 2017. vol. 37, no. 2, 163-170. DOI: 10.1007/s00367-016-0454-6}} @misc{callies_german_bight_2017, author={Callies, U.,Gaslikova, L.,Kapitza, H.,Scharfe, M.}, title={German Bight residual current variability on a daily basis: principal components of multi-decadal barotropic simulations}, year={2017}, howpublished = {journal article}, doi = {https://doi.org/10.1007/s00367-016-0466-2}, abstract = {Time variability of Eulerian residual currents in the German Bight (North Sea) is studied drawing on existing multi-decadal 2D barotropic simulations (1.6 km resolution) for the period Jan. 1958–Aug. 2015. Residual currents are calculated as 25 h means of velocity fields stored every hour. Principal component analysis (PCA) reveals that daily variations of these residual currents can be reasonably well represented in terms of only 2–3 degrees of freedom, partly linked to wind directions. The daily data refine monthly data already used in the past. Unlike existing classifications based on subjective assessment, numerical principal components (PCs) provide measures of strength and can directly be incorporated into more comprehensive statistical data analyses. Daily resolution in particular fits the time schedule of data sampled at the German Bight long-term monitoring station at Helgoland Roads. An example demonstrates the use of PCs and corresponding empirical orthogonal functions (EOFs) for the interpretation of short-term variations of these local observations. On the other hand, monthly averaging of the daily PCs enables to link up with previous studies on longer timescales.}, note = {Online available at: \url{https://doi.org/10.1007/s00367-016-0466-2} (DOI). Callies, U.; Gaslikova, L.; Kapitza, H.; Scharfe, M.: German Bight residual current variability on a daily basis: principal components of multi-decadal barotropic simulations. Geo-Marine Letters. 2017. vol. 37, no. 2, 151-162. DOI: 10.1007/s00367-016-0466-2}} @misc{schwichtenberg_residence_times_2017, author={Schwichtenberg, F.,Callies, U.,Beusekom, J.E.E.van}, title={Residence times in shallow waters help explain regional differences in Wadden Sea eutrophication}, year={2017}, howpublished = {journal article}, doi = {https://doi.org/10.1007/s00367-016-0482-2}, abstract = {Regional variations in eutrophication levels of tidal basins in the Wadden Sea can be caused by external factors, like organic matter import, and internal factors like the morphology and hydrodynamics of the receiving tidal basin. For instance, benthic nutrients from remineralized organic matter may be more concentrated in shallow basins or diluted in basins with high exchange rates. In addition, the location of a monitoring station may determine which basin-specific water masses are actually observed. In the present paper a hydrodynamic intertidal imprint (IMP) is estimated for ten stations in various tidal basins of the Wadden Sea. The fraction of time water masses spent in intertidal areas prior to observation is calculated by linking the Lagrangian transport module PELETS to already existing hourly reconstructions of currents between 1959 and 2003. Irrespective of water depth, additional calculations of mean residence times (MRT) in the Wadden Sea indicate whether, in the case of low IMP values, water masses originate from coastal areas or tidal channels. Results show distinct regional differences, with highest values in the eastern part of the Dutch sector of the southern Wadden Sea (IMP=77%, MRT=99%) and lowest values in the German/Danish sector of the northern Wadden Sea (IMP=1.1%, MRT=21%). The IMP correlates positively with observed nutrient levels (R2=0.83). Evidently, this residence time-based intertidal signal is pivotal in explaining regional variations in eutrophication levels revealed by long-term comparative data from different monitoring stations.}, note = {Online available at: \url{https://doi.org/10.1007/s00367-016-0482-2} (DOI). Schwichtenberg, F.; Callies, U.; Beusekom, J.: Residence times in shallow waters help explain regional differences in Wadden Sea eutrophication. Geo-Marine Letters. 2017. vol. 37, no. 2, 171-177. DOI: 10.1007/s00367-016-0482-2}} @misc{brase_high_resolution_2017, author={Brase, L.,Bange, H.W.,Lendt, R.,Sanders, T.,Daehnke, K.}, title={High Resolution Measurements of Nitrous Oxide (N2O) in the Elbe Estuary}, year={2017}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmars.2017.00162}, abstract = {Nitrous oxide (N2O) is one of the most important greenhouse gases and a major sink for stratospheric ozone. Estuaries are sites of intense biological production and N2O emissions. We aimed to identify hot spots of N2O production and potential pathways contributing to N2O concentrations in the surface water of the tidal Elbe estuary. During two research cruises in April and June 2015, surface water N2O concentrations were measured along the salinity gradient of the Elbe estuary by using a laser-based on-line analyzer coupled to an equilibrator. Based on these high-resolution N2O profiles, N2O saturations, and fluxes across the surface water/atmosphere interface were calculated. Additional measurements of DIN concentrations, oxygen concentration, and salinity were performed. Highest N2O concentrations were determined in the Hamburg port region reaching maximum values of 32.3 nM in April 2015 and 52.2 nM in June 2015. These results identify the Hamburg port region as a significant hot spot of N2O production, where linear correlations of AOU-N2Oxs indicate nitrification as an important contributor to N2O production in the freshwater part. However, in the region with lowest oxygen saturation, sediment denitrification obviously affected water column N2O saturation. The average N2O saturation over the entire estuary was 201% (SD: ±94%), with an average estuarine N2O flux density of 48 μmol m−2 d−1 and an overall emission of 0.18 Gg N2O y−1. In comparison to previous studies, our data indicate that N2O production pathways over the whole estuarine freshwater part have changed from predominant denitrification in the 1980s toward significant production from nitrification in the present estuary. Despite a significant reduction in N2O saturation compared to the 1980s, N2O concentrations nowadays remain on a high level, comparable to the mid-90s, although a steady decrease of DIN inputs occurred over the last decades. Hence, the Elbe estuary still remains an important source of N2O to the atmosphere.}, note = {Online available at: \url{https://doi.org/10.3389/fmars.2017.00162} (DOI). Brase, L.; Bange, H.; Lendt, R.; Sanders, T.; Daehnke, K.: High Resolution Measurements of Nitrous Oxide (N2O) in the Elbe Estuary. Frontiers in Marine Science. 2017. vol. 4, 162. DOI: 10.3389/fmars.2017.00162}} @misc{neumann_empirical_model_2017, author={Neumann, A.,Moebius, J.,Hass, H.C.,Puls, W.,Friedrich, J.}, title={Empirical model to estimate permeability of surface sediments in the German Bight (North Sea)}, year={2017}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.seares.2016.12.002}, abstract = {As the determinant of solute and particle fluxes through sediments, quantifying sediment permeability is vital step in understanding of the exchange phenomena between the water column and sediment as permeability determines the mode and intensity of solute and particle fluxes. Reliable estimates of sediment permeability are therefore a constraint on the accurate implementation of benthic biogeochemical models. This is particularly true for the North Sea, as field data are scarce and available grain-size-based models fail to represent the full range of sediment types. In this study, we combine measurements of sediment permeability and grain size analysis with a generic permeability model to establish a high-resolution permeability map of the sediment in the German Bight (North Sea). Our results show a good agreement between model-based prediction and measurements of permeability, even for a wide range of permeability values.}, note = {Online available at: \url{https://doi.org/10.1016/j.seares.2016.12.002} (DOI). Neumann, A.; Moebius, J.; Hass, H.; Puls, W.; Friedrich, J.: Empirical model to estimate permeability of surface sediments in the German Bight (North Sea). Journal of Sea Research. 2017. vol. 127, 36-45. DOI: 10.1016/j.seares.2016.12.002}} @misc{neumann_nitrate_consumption_2017, author={Neumann, A.,Beusekom, J.E.E.van,Holtappels, M.,Emeis, K.-C.}, title={Nitrate consumption in sediments of the German Bight (North Sea)}, year={2017}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.seares.2017.06.012}, abstract = {Denitrification on continental margins and in coastal sediments is a major sink of reactive N in the present nitrogen cycle and a major ecosystem service of eutrophied coastal waters. We analyzed the nitrate removal in surface sediments of the Elbe estuary, Wadden Sea, and adjacent German Bight (SE North Sea) during two seasons (spring and summer) along a eutrophication gradient ranging from a high riverine nitrate concentrations at the Elbe Estuary to offshore areas with low nitrate concentrations. The gradient encompassed the full range of sediment types and organic carbon concentrations of the southern North Sea. Based on nitrate penetration depth and concentration gradient in the porewater we estimated benthic nitrate consumption rates assuming either diffusive transport in cohesive sediments or advective transport in permeable sediments. For the latter we derived a mechanistic model of porewater flow. During the peak nitrate discharge of the river Elbe in March, the highest rates of diffusive nitrate uptake were observed in muddy sediments (up to 2.8 mmol m− 2 d− 1). The highest advective uptake rate in that period was observed in permeable sediment and was tenfold higher (up to 32 mmol m− 2 d− 1). The intensity of both diffusive and advective nitrate consumption dropped with the nitrate availability and thus decreased from the Elbe estuary towards offshore stations, and were further decreased during late summer (minimum nitrate discharge) compared to late winter (maximum nitrate discharge). In summary, our rate measurements indicate that the permeable sediment accounts for up to 90% of the total benthic reactive nitrogen consumption in the study area due to the high efficiency of advective nitrate transport into permeable sediment. Extrapolating the averaged nitrate consumption of different sediment classes to the areas of Elbe Estuary, Wadden Sea and eastern German Bight amounts to an N-loss of 3.1 ∗ 106 mol N d− 1 from impermeable, diffusion-controlled sediment, and 5.2 ∗ 107 mol N d− 1 from permeable sediment with porewater advection.}, note = {Online available at: \url{https://doi.org/10.1016/j.seares.2017.06.012} (DOI). Neumann, A.; Beusekom, J.; Holtappels, M.; Emeis, K.: Nitrate consumption in sediments of the German Bight (North Sea). Journal of Sea Research. 2017. vol. 127, 26-35. DOI: 10.1016/j.seares.2017.06.012}} @misc{floeter_pelagic_effects_2017, author={Floeter, J.,Beusekom, J.E.E.van,Auch, D.,Callies, U.,Carpenter, J.,Dudeck, T.,Eberle, S.,Eckhardt, A.,Gloe, D.,Haenselmann, K.,Hufnagl, M.,Janssen, S.,Lenhart, H.,Moeller, K.O.,North, R.P.,Pohlmann, T.,Riethmueller, R.,Schulz, S.,Spreizenbarth, S.,Temming, A.,Walter, B.,Zielinski, O.,Moellmann, C.}, title={Pelagic effects of offshore wind farm foundations in the stratified North Sea}, year={2017}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.pocean.2017.07.003}, abstract = {A recent increase in the construction of Offshore Wind Farms (OWFs) has initiated numerous environmental impact assessments and monitoring programs. These focus on sea mammals, seabirds, benthos or demersal fish, but generally ignore any potential effects OWFs may have on the pelagic ecosystem. The only work on the latter has been through modelling analyses, which predict localised impacts like enhanced vertical mixing leading to a decrease in seasonal stratification, as well as shelf-wide changes of tidal amplitudes. Here we provide for the first-time empirical bio-physical data from an OWF. The data were obtained by towing a remotely operated vehicle (TRIAXUS ROTV) through two non-operating OWFs in the summer stratified North Sea. The undulating TRIAXUS transects provided high-resolution CTD data accompanied by oxygen and chlorophyll-a measurements. We provide empirical indication that vertical mixing is increased within the OWFs, leading to a doming of the thermocline and a subsequent transport of nutrients into the surface mixed layer (SML). Nutrients were taken up rapidly because underwater photosynthetically active radiation (PAR) enabled net primary production in the entire water column, especially within submesoscale chlorophyll-a pillars that were observed at regular intervals within the OWF regions. Video Plankton Recorder (VPR) images revealed distinct meroplankton distribution patterns in a copepod-dominated plankton community. Hydroacoustic records did not show any OWF effects on the distribution of pelagic fish. The results of a pre-OWF survey show however, that it is difficult to fully separate the anthropogenic impacts from the natural variability.}, note = {Online available at: \url{https://doi.org/10.1016/j.pocean.2017.07.003} (DOI). Floeter, J.; Beusekom, J.; Auch, D.; Callies, U.; Carpenter, J.; Dudeck, T.; Eberle, S.; Eckhardt, A.; Gloe, D.; Haenselmann, K.; Hufnagl, M.; Janssen, S.; Lenhart, H.; Moeller, K.; North, R.; Pohlmann, T.; Riethmueller, R.; Schulz, S.; Spreizenbarth, S.; Temming, A.; Walter, B.; Zielinski, O.; Moellmann, C.: Pelagic effects of offshore wind farm foundations in the stratified North Sea. Progress in Oceanography. 2017. vol. 156, 154-173. DOI: 10.1016/j.pocean.2017.07.003}} @misc{kunz_high_frequency_2017, author={Kunz, V.,Hensley, R.,Brase, L.,Borchardt, D.,Rode, M.}, title={High frequency measurements of reach scale nitrogen uptake in a fourth order river with contrasting hydromorphology and variable water chemistry (Weiße Elster, Germany)}, year={2017}, howpublished = {journal article}, doi = {https://doi.org/10.1002/2016WR019355}, abstract = {River networks exhibit a globally important capacity to retain and process nitrogen. However direct measurement of in‐stream removal in higher order streams and rivers has been extremely limited. The recent advent of automated sensors has allowed high frequency measurements, and the development of new passive methods of quantifying nitrogen uptake which are scalable across river size. Here we extend these methods to higher order streams with anthropogenically elevated nitrogen levels, substantial tributaries, complex input signals, and multiple N species. We use a combination of two station time‐series and longitudinal profiling of nitrate to assess differences in nitrogen processing dynamics in a natural versus a channelized impounded reach with WWTP effluent impacted water chemistry. Our results suggest that net mass removal rates of nitrate were markedly higher in the unmodified reach. Additionally, seasonal variations in temperature and insolation affected the relative contribution of assimilatory versus dissimilatory uptake processes, with the latter exhibiting a stronger positive dependence on temperature. From a methodological perspective, we demonstrate that a mass balance approach based on high frequency data can be useful in deriving quantitative uptake estimates, even under dynamic inputs and lateral tributary inflow. However, uncertainty in diffuse groundwater inputs and more importantly the effects of alternative nitrogen species, in this case ammonium, pose considerable challenges to this method.}, note = {Online available at: \url{https://doi.org/10.1002/2016WR019355} (DOI). Kunz, V.; Hensley, R.; Brase, L.; Borchardt, D.; Rode, M.: High frequency measurements of reach scale nitrogen uptake in a fourth order river with contrasting hydromorphology and variable water chemistry (Weiße Elster, Germany). Water Resources Research. 2017. vol. 53, no. 1, 328-343. DOI: 10.1002/2016WR019355}} @misc{ahmerkamp_regulation_of_2017, author={Ahmerkamp, S.,Winter, C.,Kraemer, K.,de Beer, D.,Janssen, F.,Friedrich, J.,Kuypers, M.M.M.,Holtappels, M.}, title={Regulation of benthic oxygen fluxes in permeable sediments of the coastal ocean}, year={2017}, howpublished = {journal article}, doi = {https://doi.org/10.1002/lno.10544}, abstract = {Large areas of the oceanic shelf are composed of sandy sediments through which reactive solutes are transported via porewater advection fueling active microbial communities. The advective oxygen transport in permeable sands of the North Sea was investigated under in situ conditions using a new benthic observatory to assess the dynamic interaction of hydrodynamics, sediment morphodynamics, and oxygen penetration depth. During 16 deployments, concurrent measurement of current velocity, sediment topography, and porewater oxygen concentration were carried out. In all cases the oxyclines were found at depths of 1–6 cm, correlating with the topography of stationary and migrating bedforms (ripples). Different conditions in terms of bottom water currents and bedform migration led to fluctuating oxygen penetration depths and, hence, highly variable redox conditions in up to 2.5 cm thick layers beneath the surface. Volumetric oxygen consumption rates of surface sediments were measured on board in flow-through reactors. Bedform migration was found to reduce consumption rates by up to , presumably caused by the washout of organic carbon that is otherwise trapped in the pore space of the sediment. Based on the observations we found oxygen penetration depths to be largely controlled by oxygen consumption rates, grain size, and current velocity. These controlling variables are summarized by an adapted Damköhler number which allows for prediction of oxygen penetretion depths based on a simple scaling law. By integrating the oxygen consumption rates over the oxygen penetration depth, oxygen fluxes of 8–34 mmol m−2 d−1 were estimated.}, note = {Online available at: \url{https://doi.org/10.1002/lno.10544} (DOI). Ahmerkamp, S.; Winter, C.; Kraemer, K.; de Beer, D.; Janssen, F.; Friedrich, J.; Kuypers, M.; Holtappels, M.: Regulation of benthic oxygen fluxes in permeable sediments of the coastal ocean. Limnology and Oceanography. 2017. vol. 62, no. 5, 1935-1954. DOI: 10.1002/lno.10544}} @misc{callies_surface_drifters_2017, author={Callies, U.,Groll, N.,Horstmann, J.,Kapitza, H.,Klein, H.,Massmann, S.,Schwichtenberg, F.}, title={Surface drifters in the German Bight: model validation considering windage and Stokes drift}, year={2017}, howpublished = {journal article}, doi = {https://doi.org/10.5194/os-13-799-2017}, abstract = {Six surface drifters (drogued at about 1 m depth) deployed in the inner German Bight (North Sea) were tracked for between 9 and 54 days. Corresponding simulations were conducted offline based on surface currents from two independent models (BSHcmod and TRIM). Inclusion of a direct wind drag (0.6 % of 10 m wind) was needed for successful simulations based on BSHcmod currents archived for a 5 m depth surface layer. Adding 50 % of surface Stokes drift simulated with a third-generation wave model (WAM) was tested as an alternative approach. Results resembled each other during most of the time. Successful simulations based on TRIM surface currents (1 m depth) suggest that both approaches were mainly needed to compensate insufficient vertical resolution of hydrodynamic currents.,The study suggests that the main sources of simulation errors were inaccurate Eulerian currents and lacking representation of sub-grid-scale processes. Substantial model errors often occurred under low wind conditions. A lower limit of predictability (about 3–5 km day−1) was estimated from two drifters that were initially spaced 20 km apart but converged quickly and diverged again after having stayed at a distance of 2 km or less for about 10 days. In most cases, errors in simulated 25 h drifter displacements were of similar order of magnitude.}, note = {Online available at: \url{https://doi.org/10.5194/os-13-799-2017} (DOI). Callies, U.; Groll, N.; Horstmann, J.; Kapitza, H.; Klein, H.; Massmann, S.; Schwichtenberg, F.: Surface drifters in the German Bight: model validation considering windage and Stokes drift. Ocean Science. 2017. vol. 13, no. 5, 799-827. DOI: 10.5194/os-13-799-2017}} @misc{kraemer_abrupt_emergence_2017, author={Kraemer, K.,Holler, P.,Herbst, G.,Bratek, A.,Ahmerkamp, S.,Neumann, A.,Bartholomae, A.,Beusekom, J.E.E.van,Holtappels, M.,Winter, C.}, title={Abrupt emergence of a large pockmark field in the German Bight, southeastern North Sea}, year={2017}, howpublished = {journal article}, doi = {https://doi.org/10.1038/s41598-017-05536-1}, abstract = {A series of multibeam bathymetry surveys revealed the emergence of a large pockmark field in the southeastern North Sea. Covering an area of around 915 km2, up to 1,200 pockmarks per square kilometer have been identified. The time of emergence can be confined to 3 months in autumn 2015, suggesting a very dynamic genesis. The gas source and the trigger for the simultaneous outbreak remain speculative. Subseafloor structures and high methane concentrations of up to 30 μmol/l in sediment pore water samples suggest a source of shallow biogenic methane from the decomposition of postglacial deposits in a paleo river valley. Storm waves are suggested as the final trigger for the eruption of the gas. Due to the shallow water depths and energetic conditions at the presumed time of eruption, a large fraction of the released gas must have been emitted to the atmosphere. Conservative estimates amount to 5 kt of methane, equivalent to 67% of the annual release from the entire North Sea. These observations most probably describe a reoccurring phenomenon in shallow shelf seas, which may have been overlooked before because of the transient nature of shallow water bedforms and technology limitations of high resolution bathymetric mapping.}, note = {Online available at: \url{https://doi.org/10.1038/s41598-017-05536-1} (DOI). Kraemer, K.; Holler, P.; Herbst, G.; Bratek, A.; Ahmerkamp, S.; Neumann, A.; Bartholomae, A.; Beusekom, J.; Holtappels, M.; Winter, C.: Abrupt emergence of a large pockmark field in the German Bight, southeastern North Sea. Scientific Reports. 2017. vol. 7, 5150. DOI: 10.1038/s41598-017-05536-1}} @misc{jacob_oxidation_kinetics_2017, author={Jacob, J.,Nowka, B.,Merten, V.,Sanders, T.,Spieck, E.,Daehnke, K.}, title={Oxidation kinetics and inverse isotope effect of marine nitrite-oxidizing isolates}, year={2017}, howpublished = {journal article}, doi = {https://doi.org/10.3354/ame01859}, abstract = {Nitrification, the step-wise oxidation of ammonium to nitrite and nitrate, is important in the marine environment, because it produces nitrate, the most abundant marine dissolved inorganic nitrogen (DIN) component and N-source for phytoplankton and microbes. This study focuses on the second step of nitrification, which is carried out by a distinct group of organisms, nitrite-oxidizing bacteria (NOB). The growth of NOB is characterized by nitrite oxidation kinetics, which we investigate for four pure cultures of marine NOB (Nitrospina watsonii 347, Nitrospira Ecomares 2.1, Nitrococcus mobilis 231, and Nitrobacter sp. 311). We further compare the kinetics to those of non-marine species, because substrate concentrations in marine environments are comparatively low, which likely influences kinetics and highlights the importance of this study. We also determine the isotope effect during nitrite oxidation of a pure culture of Nitrospina (Nitrospina watsonii 347), belonging to one of the most abundant marine NOB genera, and for a Nitrospira strain (Nitrospira Ecomares 2.1). The enzyme kinetic of nitrite oxidation, described by Michaelis-Menten kinetics, of four marine genera are rather narrow and fall in the low end of Km values reported so far, which span over three orders of magnitude between 9 to >1000 µM NO2-. Nitrospina has the lowest half-saturation constant Km (19 µM NO2-), followed by Nitrobacter (28 µM NO2-), Nitrospira (Km of 54 µM NO2-), and Nitrococcus (120 µM NO2-). The isotope effect during nitrite oxidation by Nitrospira watsonii 347 and Nitrospina Ecomares 2.1 is 10.2±0.9‰ and 9.7±0.8‰, respectively. This confirms the inverse isotope effect of NOB described previously; however, it is at the lower end of reported isotope effects. We speculate that differences in isotope effects reflect distinct NXR orientation.}, note = {Online available at: \url{https://doi.org/10.3354/ame01859} (DOI). Jacob, J.; Nowka, B.; Merten, V.; Sanders, T.; Spieck, E.; Daehnke, K.: Oxidation kinetics and inverse isotope effect of marine nitrite-oxidizing isolates. Aquatic Microbial Ecology. 2017. vol. 80, no. 3, 289-300. DOI: 10.3354/ame01859}} @misc{li_organophosphate_esters_2017, author={Li, J.,Xie, Z.,Mi, W.,Lai, S.,Tian, C.,Emeis, K.,Ebinghaus, R.}, title={Organophosphate Esters in Air, Snow, and Seawater in the North Atlantic and the Arctic}, year={2017}, howpublished = {journal article}, doi = {https://doi.org/10.1021/acs.est.7b01289}, abstract = {The concentrations of eight organophosphate esters (OPEs) have been investigated in air, snow and seawater samples collected during the cruise of ARK-XXVIII/2 from sixth June to third July 2014 across the North Atlantic and the Arctic. The sum of gaseous and particle concentrations (ΣOPE) ranged from 35 to 343 pg/m3. The three chlorinated OPEs accounted for 88 ± 5% of the ΣOPE. The most abundant OPE was tris(2-chloroethyl) phosphate (TCEP), with concentrations ranging from 30 to 227 pg/m3, followed by three major OPEs, such as tris(1-chloro-2-propyl) phosphate (TCPP, 0.8 to 82 pg/m3), tri-n-butyl phosphate (TnBP, 2 to 19 pg/m3), and tri-iso-butyl phosphate (TiBP, 0.3 to 14 pg/m3). The ΣOPE concentrations in snow and seawater ranged from 4356 to 10561 pg/L and from 348 to 8396 pg/L, respectively. The atmospheric particle-bound dry depositions of TCEP ranged from 2 to 12 ng/m2/day. The air–seawater gas exchange fluxes were dominated by net volatilization from seawater to air for TCEP (mean, 146 ± 239 ng/m2/day), TCPP (mean, 1670 ± 3031 ng/m2/day), TiBP (mean, 537 ± 581 ng/m2/day) and TnBP (mean, 230 ± 254 ng/m2/day). This study highlighted that OPEs are subject to long-range transport via both air and seawater from the European continent and seas to the North Atlantic and the Arctic.}, note = {Online available at: \url{https://doi.org/10.1021/acs.est.7b01289} (DOI). Li, J.; Xie, Z.; Mi, W.; Lai, S.; Tian, C.; Emeis, K.; Ebinghaus, R.: Organophosphate Esters in Air, Snow, and Seawater in the North Atlantic and the Arctic. Environmental Science and Technology. 2017. vol. 51, no. 12, 6887-6896. DOI: 10.1021/acs.est.7b01289}} @misc{li_spatial_distribution_2017, author={Li, J.,Tang, J.,Mi, W.,Tian, C.,Emeis, K.,Ebinghaus, R.,Xie, Z.}, title={Spatial Distribution and Seasonal Variation of Organophosphate Esters in Air above the Bohai and Yellow Seas, China}, year={2017}, howpublished = {journal article}, doi = {https://doi.org/10.1021/acs.est.7b03807}, abstract = {Nine organophosphate esters (OPEs) were investigated in air samples collected over the Bohai and Yellow Seas (East Asia) during a research cruise between June 28 and July 13, 2016. These same OPEs were quantified at a research site (North Huangcheng Island, NHI) in the middle of the Bohai Strait from May 16, 2015, to March 21, 2016. The median total OPE (ΣOPE) concentration over the Bohai and Yellow Seas was 280 pg/m3. Tris(1-chloro-2-propyl) (TCPP) was the most abundant OPE, followed by tris(2-chloroethyl) phosphate (TCEP), tri-iso-butyl phosphate (TiBP), and tri-n-butyl phosphate (TnBP). Particle-bound OPEs accounted for 51 ± 21% of the total OPEs. On NHI, the median ΣOPE concentration was 210 pg/m3, and the average particle-bound fraction was 82 ± 17%. For samples collected on NHI, significant negative linear correlations were found between the gaseous OPEs and 1/T (T: temperature (K)) (except TDCP, TPeP, and TCP). Among the 79 investigated samples, significant correlations between the measured OPE gas/particle partitioning coefficients (Kp,m) and subcooled liquid pressure (PL◦) (p < 0.05) were found for only 14 samples, suggesting that OPEs have low potential to achieve equilibrium or ascribe to the artificial sampling. The annual dry deposition input of OPEs into the Bohai and Yellow Seas is estimated to be 12 tons/year.}, note = {Online available at: \url{https://doi.org/10.1021/acs.est.7b03807} (DOI). Li, J.; Tang, J.; Mi, W.; Tian, C.; Emeis, K.; Ebinghaus, R.; Xie, Z.: Spatial Distribution and Seasonal Variation of Organophosphate Esters in Air above the Bohai and Yellow Seas, China. Environmental Science and Technology. 2017. vol. 52, no. 1, 89-97. DOI: 10.1021/acs.est.7b03807}} @misc{neumann_fullcoverage_spatial_2017, author={Neumann, H.,Diekmann, R.,Emeis, K.-C.,Kleeberg, U.,Moll, A.,Kröncke, I.}, title={Full-coverage spatial distribution of epibenthic communities in the south-eastern North Sea in relation to habitat characteristics and fishing effort}, year={2017}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.marenvres.2017.07.010}, abstract = {Full-coverage spatial data of occurrence and a detailed description of habitat requirements of epibenthic communities are needed in many conservation and management contexts. In the North Sea the focus has so far been on small benthic infauna, whereas structure and ecosystem functions of larger epifaunal communities have been largely ignored. This study provides a comprehensive analysis of epibenthic community structure in the south-eastern North Sea, including a detailed inventory of species, diversity and spatially contiguous distribution of communities. Data from nearly 400 stations were compiled for the study, enabling us to describe epibenthic community structure at unprecedented spatial resolution. Eight distinct epibenthic communities were found in the south-eastern North Sea by using multivariate analysis. Distribution modelling with eight environmental variables (bottom temperature and salinity, temperature differences between summer and winter, mud content of sediments, maximum bottom shear stress, stratification, water depth and annual primary production) and one human pressure (fishing effort) was used to extrapolate probable spatial distributions and to identify associated habitat characteristics of the communities in the south-eastern North Sea. Three large epibenthic communities “Coast”, “Oysterground” and “Tail End” reflect a gradual habitat change from the coast towards offshore regions, expressed in gradients of bottom salinity, seasonal temperature differences and stratification as the dominant environmental factors. Five smaller communities (“Amrum Bank”, “Frisian Front”, “Deeps”, “Dogger Bank” and “Dogger Slope”) outline specific habitats in the south-eastern North Sea. The “Dogger Slope” community has not been recognized before, but has a predicted spatial extent of 7118 km2. Due to the high occurrence of long-lived, sessile species such as sponges this community is very sensitive to demersal fishing.}, note = {Online available at: \url{https://doi.org/10.1016/j.marenvres.2017.07.010} (DOI). Neumann, H.; Diekmann, R.; Emeis, K.; Kleeberg, U.; Moll, A.; Kröncke, I.: Full-coverage spatial distribution of epibenthic communities in the south-eastern North Sea in relation to habitat characteristics and fishing effort. Marine Environmental Research. 2017. vol. 130, 1-11. DOI: 10.1016/j.marenvres.2017.07.010}} @misc{mbaye_seasonal_and_2016, author={Mbaye, M.,Gaye, A.,Spitzy, A.,Dähnke, K.,Afouda, A.,Gaye, B.}, title={Seasonal and spatial variation in suspended matter, organic carbon, nitrogen, and nutrient concentrations of the Senegal River in West Africa}, year={2016}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.limno.2015.12.003}, abstract = {The Senegal River is of intermediate size accommodating at present about 3.5 million inhabitants in its catchment. Its upstream tributaries flow through different climatic zones from the wet tropics in the source area in Guinea to the dry Sahel region at the border between Senegal and Mauritania. Total suspended matter, particulate and dissolved organic carbon and nitrogen as well as nutrient concentrations were determined during the dry and wet seasons at 19 locations from the up- to downstream river basin. The aims of the study were to evaluate the degree of human interference, to determine the dissolved and particulate river discharges into the coastal sea and to supply data to validate model results. Statistical analyses showed that samples from the wet and dry season are significantly different in composition and that the upstream tributaries differ mainly in their silicate and suspended matter contents. Nutrient concentrations are relatively low in the river basin, indicating low human impact. Increasing nitrate concentrations, however, show the growing agriculture in the irrigated downstream areas. Particulate organic matter is dominated by C4 plants during the wet season and by aquatic plankton during the dry season. The total suspended matter (TSM) discharge at the main gauging station Bakel was about 1.93 Tg yr−1 which is in the range of the only available literature data from the 1980s. The calculated annual discharges of particulate organic carbon (POC), dissolved organic carbon (DOC) and dissolved organic nitrogen (DON) are 55.8 Gg yr−1, 54.1 Gg yr−1, and 5.3 Gg yr−1, respectively. These first estimates from the Senegal River need to be verified by further studies.}, note = {Online available at: \url{https://doi.org/10.1016/j.limno.2015.12.003} (DOI). Mbaye, M.; Gaye, A.; Spitzy, A.; Dähnke, K.; Afouda, A.; Gaye, B.: Seasonal and spatial variation in suspended matter, organic carbon, nitrogen, and nutrient concentrations of the Senegal River in West Africa. Limnologica. 2016. vol. 57, 1-13. DOI: 10.1016/j.limno.2015.12.003}} @misc{neumann_benthic_remineralisation_2016, author={Neumann, A.,Lahajnar, N.,Emeis, K.-C.}, title={Benthic remineralisation rates in shelf and slope sediments of the northern Benguela upwelling margin}, year={2016}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.csr.2015.12.009}, abstract = {The Benguela Upwelling System off Namibia is a region of intensive plankton production. Remineralisation of this biomass frequently causes the formation of an oxygen minimum zone. A part of the organic matter is further deposited on the broad shelf in form of an extensive mudbelt with high TOC concentrations. During February 2011 we retrieved sediment samples from shelf and slope sediment along the Namibian coast to establish fluxes of nutrients, oxygen, and N2 on the basis of pore water concentrations. In mudbelt sediment, fluxes were estimated as high as 8 mmol NH4+ m−2 d−1 and 0.9 mmol PO43− m−2 d−1, which is probably attributable to the activity of large sulphur bacteria. Especially phosphate is mobilised from sediment overlain by oxygen deficient bottom water when and where bottom water oxygen concentrations fall below 50 µmol l−1. In comparison to nutrient transport by Southern Atlantic Central Water flowing onto the Namibian shelf, benthic nutrient fluxes of the mudbelt contribute less than 5% to the nutrient budget of the shelf.}, note = {Online available at: \url{https://doi.org/10.1016/j.csr.2015.12.009} (DOI). Neumann, A.; Lahajnar, N.; Emeis, K.: Benthic remineralisation rates in shelf and slope sediments of the northern Benguela upwelling margin. Continental Shelf Research. 2016. vol. 113, 47-61. DOI: 10.1016/j.csr.2015.12.009}} @misc{lucas_shortterm_dynamics_2016, author={Lucas, J.,Koester, I.,Wichels, A.,Niggemann, J.,Dittmer, T.,Callies, U.,Wiltshire, K.H.,Gerdts, G.}, title={Short-Term Dynamics of North Sea Bacterioplankton-Dissolved Organic Matter Coherence on Molecular Level}, year={2016}, howpublished = {journal article}, doi = {https://doi.org/10.3389/fmicb.2016.00321}, abstract = {Remineralization and transformation of dissolved organic matter (DOM) by marine microbes shape the DOM composition and thus, have large impact on global carbon and nutrient cycling. However, information on bacterioplankton-DOM interactions on a molecular level is limited. We examined the variation of bacterial community composition (BCC) at Helgoland Roads (North Sea) in relation to variation of molecular DOM composition and various environmental parameters on short-time scales. Surface water samples were taken daily over a period of 20 days. Bacterial community and molecular DOM composition were assessed via 16S rRNA gene tag sequencing and ultrahigh resolution Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR-MS), respectively. Environmental conditions were driven by a coastal water influx during the first half of the sampling period and the onset of a summer phytoplankton bloom toward the end of the sampling period. These phenomena led to a distinct grouping of bacterial communities and DOM composition which was particularly influenced by total dissolved nitrogen (TDN) concentration, temperature, and salinity, as revealed by distance-based linear regression analyses. Bacterioplankton-DOM interaction was demonstrated in strong correlations between specific bacterial taxa and particular DOM molecules, thus, suggesting potential specialization on particular substrates. We propose that a combination of high resolution techniques, as used in this study, may provide substantial information on substrate generalists and specialists and thus, contribute to prediction of BCC variation.}, note = {Online available at: \url{https://doi.org/10.3389/fmicb.2016.00321} (DOI). Lucas, J.; Koester, I.; Wichels, A.; Niggemann, J.; Dittmer, T.; Callies, U.; Wiltshire, K.; Gerdts, G.: Short-Term Dynamics of North Sea Bacterioplankton-Dissolved Organic Matter Coherence on Molecular Level. Frontiers in Microbiology. 2016. vol. 7, 321. DOI: 10.3389/fmicb.2016.00321}} @misc{callies_regions_where_2016, author={Callies, U.,Schwichtenberg, F.}, title={Regions where the application of dispersants can be expected to be beneficial - an assessment based on drift modelling}, year={2016}, howpublished = {journal article}, abstract = {The use of hydrodynamic models for predicting oil slick movements and effects of weathering processes is nowadays an essential component of any contingency planning. When the use of dispersants is an option, hydrodynamic modelling can also support corresponding decision making.}, note = {Online available at: \url{} (DOI). Callies, U.; Schwichtenberg, F.: Regions where the application of dispersants can be expected to be beneficial - an assessment based on drift modelling. BfR-Wissenschaft. 2016. no. 2, 31-35.}} @misc{jacob_nitrite_consumption_2016, author={Jacob, J.,Sanders, T.,Daehnke, K.}, title={Nitrite consumption and associated isotope changes during a river flood event}, year={2016}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-13-5649-2016}, abstract = {In oceans, estuaries, and rivers, nitrification is an important nitrate source, and stable isotopes of nitrate are often used to investigate recycling processes (e.g. remineralisation, nitrification) in the water column. Nitrification is a two-step process, where ammonia is oxidised via nitrite to nitrate. Nitrite usually does not accumulate in natural environments, which makes it difficult to study the single isotope effect of ammonia oxidation or nitrite oxidation in natural systems.,However, during an exceptional flood in the Elbe River in June 2013, we found a unique co-occurrence of ammonium, nitrite, and nitrate in the water column, returning towards normal summer conditions within 1 week. Over the course of the flood, we analysed the evolution of δ15N–NH4+ and δ15N–NO2− in the Elbe River. In concert with changes in suspended particulate matter (SPM) and δ15N SPM, as well as nitrate concentration, δ15N–NO3− and δ18O–NO3−, we calculated apparent isotope effects during net nitrite and nitrate consumption.,During the flood event, > 97 % of total reactive nitrogen was nitrate, which was leached from the catchment area and appeared to be subject to assimilation. Ammonium and nitrite concentrations increased to 3.4 and 4.4 µmol L−1, respectively, likely due to remineralisation, nitrification, and denitrification in the water column. δ15N–NH4+ values increased up to 12 ‰, and δ15N–NO2− ranged from −8.0 to −14.2 ‰. Based on this, we calculated an apparent isotope effect 15ε of −10.0 ± 0.1 ‰ during net nitrite consumption, as well as an isotope effect 15ε of −4.0 ± 0.1 ‰ and 18ε of −5.3 ± 0.1 ‰ during net nitrate consumption. On the basis of the observed nitrite isotope changes, we evaluated different nitrite uptake processes in a simple box model. We found that a regime of combined riparian denitrification and 22 to 36 % nitrification fits best with measured data for the nitrite concentration decrease and isotope increase.}, note = {Online available at: \url{https://doi.org/10.5194/bg-13-5649-2016} (DOI). Jacob, J.; Sanders, T.; Daehnke, K.: Nitrite consumption and associated isotope changes during a river flood event. Biogeosciences. 2016. vol. 13, no. 19, 5649-5659. DOI: 10.5194/bg-13-5649-2016}} @misc{baturin_geochemistry_of_2015, author={Baturin, G.,Zavjalov, P.,Friedrich, J.}, title={Geochemistry of sediments in the modern Aral Basin}, year={2015}, howpublished = {journal article}, doi = {https://doi.org/10.1134/S0001437015020022}, abstract = {The study presents the first geochemical data on the bottom sediments from the modern desiccating Aral Sea, which allowed a direct comparison between the compositions of the sediments collected during the pre- and postdesiccation periods. This study revealed the differences and similarities in the major and trace element composition of the sediments collected from the former bottom of the Large Aral Sea, the present-day sea bottom, the desiccated sea bottom, and the Amu Darya suspended sediments with respect to the average shale composition. The euxinic sediments from the western deep-water depression are characterized by high concentrations of U, Mo, and organic matter. The precipitation of evaporite salts occurs at the shallowest depths and in the western depression. The salt deposits exposed by the shrinking sea tend to be desalinated due to intense weathering. The mercury detected at high levels in the river suspended sediments of the former Amu Darya discharge was found to be absent in the modern marine sediments due to reductions in the river flow and the possible migration to the atmosphere. Many other trace elements, besides uranium, may also accumulate in seawater.}, note = {Online available at: \url{https://doi.org/10.1134/S0001437015020022} (DOI). Baturin, G.; Zavjalov, P.; Friedrich, J.: Geochemistry of sediments in the modern Aral Basin. Oceanology. 2015. vol. 55, 253-262. DOI: 10.1134/S0001437015020022}} @misc{stelzenmueller_quantitative_environmental_2015, author={Stelzenmueller, V.,Fock, H.O.,Gimpel, A.,Rambo, H.,Diekmann, R.,Probst, W.N.,Callies, U.,Bockelmann, F.,Neumann, H.,Kroencke, I.}, title={Quantitative environmental risk assessments in the context of marine spatial management: current approaches and some perspectives}, year={2015}, howpublished = {journal article}, doi = {https://doi.org/10.1093/icesjms/fsu206}, abstract = {Marine spatial planning (MSP) requires spatially explicit environmental risk assessment (ERA) frameworks with quantitative or probabilistic measures of risk, enabling an evaluation of spatial management scenarios. ERAs comprise the steps of risk identification, risk analysis, and risk evaluation. A review of ERAs in in the context of spatial management revealed a synonymous use of the concepts of risk, vulnerability and impact, a need to account for uncertainty and a lack of a clear link between risk analysis and risk evaluation. In a case study, we addressed some of the identified gaps and predicted the risk of changing the current state of benthic disturbance by bottom trawling due to future MSP measures in the German EEZ of the North Sea. We used a quantitative, dynamic, and spatially explicit approach where we combined a Bayesian belief network with GIS to showcase the steps of risk characterization, risk analysis, and risk evaluation. We distinguished 10 benthic communities and 6 international fishing fleets. The risk analysis produced spatially explicit estimates of benthic disturbance, which was computed as a ratio between relative local mortality by benthic trawling and the recovery potential after a trawl event. Results showed great differences in spatial patterns of benthic disturbance when accounting for different environmental impacts of the respective fleets. To illustrate a risk evaluation process, we simulated a spatial shift of the international effort of two beam trawl fleets, which are affected the most by future offshore wind development. The Bayesian belief network (BN) model was able to predict the proportion of the area where benthic disturbance likely increases. In conclusion, MSP processes should embed ERA frameworks which allow for the integration of multiple risk assessments and the quantification of related risks as well as uncertainties at a common spatial scale.}, note = {Online available at: \url{https://doi.org/10.1093/icesjms/fsu206} (DOI). Stelzenmueller, V.; Fock, H.; Gimpel, A.; Rambo, H.; Diekmann, R.; Probst, W.; Callies, U.; Bockelmann, F.; Neumann, H.; Kroencke, I.: Quantitative environmental risk assessments in the context of marine spatial management: current approaches and some perspectives. ICES Journal of Marine Science : Journal du Conseil. 2015. vol. 72, no. 3, 1022-1042. DOI: 10.1093/icesjms/fsu206}} @misc{mawji_the_geotraces_2015, author={Mawji, E.,Schlitzer, R.,Masferrer Dodas, E.,Abadie, C.,Abouchami, W.,Anderson, R.F.,Baars, O.,Bakker, K.,Baskaran, M.,Bates, N.R.,Bluhm, K.,Bowie, A.,Bown, J.,Boye, M.,Boyle, E.A.,Branellec, P.,Bruland, K.W.,Brzezinski, M.A.,Bucciarelli, E.,Buesseler, K.,Butler, E.,Cai, P.,Cardinal, D.,Casciotti, K.,Chaves, J.,Cheng, H.,Chever, F.,Church, T.M.,Colman, A.S.,Conway, T.M.,Croot, P.L.,Cutter, G.A.,de Baar, H.J.W.,de Souza, G.F.,Dehairs, F.,Deng, F.,Thi Dieu, H.,Dulaquais, G.,Echegoyen-Sanz, Y.,Edwards, R.L.,Fahrbach, E.,Fitzsimmons, J.,Fleisher, M.,Frank, M.,Friedrich, J.,Fripiat, F.,Galer, S.J.G.,Gamo, T.,Garcia Solsona, E.,Loes J.A. Gerringa, L.J.A.,Godoy, J.M.,Gonzalez, S.,Grossteffan, E.,Hatta, M.,Hayes, C.T.,Heller, M.I.,Henderson, G.,Huang, K.-F.,Jeandel, C.,Jenkins, W.J.,John, S.,Kenna, T.C.,Klunder, M.,Kretschmer, S.,Kumamoto, Y.,Laan, P.,Labatut, M.,Lacan, F.,Lam, P.J.,Lannuzel, D.,le Moigne, F.,Lechtenfeld, O.J.,Lohan, M.C.,Lu, Y.,Masque, P.,McClain, C.R.,Measures, C.,Middag, R.,Moffett, J.,Navidad, A.,Nishioka, J.,Noble, A.,Obata, H.,Ohnemus, D.C.,Owens, S.,Planchon, F.,Pradoux, C.,Puigcorbe, V.,Quay, P.,Radic, A.,Rehkaemper, M.,Remenyi, T.,Rijkenberg, M.J.A.,Rintoul, S.,Robinson, L.F.,Roeske, T.,Rosenberg, M.,van der Loeff, M.R.,Ryabenko, E.,Saito, M.A.,Roshan, S.,Salt, L.,Sarthou, G.,Schauer, U.,Scott, P.,Sedwick, P.N.,Sha, L.,Shiller, A.M.,Sigman, D.M.,Smethie, W.,Smith, G.J.,Sohrin, Y.,Speich, S.,Stichel, T.,Stutsman, J.,Swift, J.H.,Tagliabue, A.,Thomas, A.,Tsunogai, U.,Twining, B.S.,Aken, H.M.van,Heuven, S.van,Ooijen, J.van,Weerlee, E.van,Venchiarutti, C.,Voelker, A.H.L.,Wake, B.,Warner, M.J.,Woodward, E.M.S.,Wu, J.,Wyatt, N.,Yoshikawa, H.,Zheng, X.-Y.,Xue, Z.,Zieringer, M.,Zimmer, L.A.}, title={The GEOTRACES Intermediate Data Product 2014}, year={2015}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.marchem.2015.04.005}, abstract = {The GEOTRACES Intermediate Data Product 2014 (IDP2014) is the first publicly available data product of the international GEOTRACES programme, and contains data measured and quality controlled before the end of 2013. It consists of two parts: (1) a compilation of digital data for more than 200 trace elements and isotopes (TEIs) as well as classical hydrographic parameters, and (2) the eGEOTRACES Electronic Atlas providing a strongly inter-linked on-line atlas including more than 300 section plots and 90 animated 3D scenes. The IDP2014 covers the Atlantic, Arctic, and Indian oceans, exhibiting highest data density in the Atlantic. The TEI data in the IDP2014 are quality controlled by careful assessment of intercalibration results and multi-laboratory data comparisons at cross-over stations. The digital data are provided in several formats, including ASCII spreadsheet, Excel spreadsheet, netCDF, and Ocean Data View collection. In addition to the actual data values the IDP2014 also contains data quality flags and 1-σ data error values where available. Quality flags and error values are useful for data filtering. Metadata about data originators, analytical methods and original publications related to the data are linked to the data in an easily accessible way. The eGEOTRACES Electronic Atlas is the visual representation of the IDP2014 data providing section plots and a new kind of animated 3D scenes. The basin-wide 3D scenes allow for viewing of data from many cruises at the same time, thereby providing quick overviews of large-scale tracer distributions. In addition, the 3D scenes provide geographical and bathymetric context that is crucial for the interpretation and assessment of observed tracer plumes, as well as for making inferences about controlling processes.}, note = {Online available at: \url{https://doi.org/10.1016/j.marchem.2015.04.005} (DOI). Mawji, E.; Schlitzer, R.; Masferrer Dodas, E.; Abadie, C.; Abouchami, W.; Anderson, R.; Baars, O.; Bakker, K.; Baskaran, M.; Bates, N.; Bluhm, K.; Bowie, A.; Bown, J.; Boye, M.; Boyle, E.; Branellec, P.; Bruland, K.; Brzezinski, M.; Bucciarelli, E.; Buesseler, K.; Butler, E.; Cai, P.; Cardinal, D.; Casciotti, K.; Chaves, J.; Cheng, H.; Chever, F.; Church, T.; Colman, A.; Conway, T.; Croot, P.; Cutter, G.; de Baar, H.; de Souza, G.; Dehairs, F.; Deng, F.; Thi Dieu, H.; Dulaquais, G.; Echegoyen-Sanz, Y.; Edwards, R.; Fahrbach, E.; Fitzsimmons, J.; Fleisher, M.; Frank, M.; Friedrich, J.; Fripiat, F.; Galer, S.; Gamo, T.; Garcia Solsona, E.; Loes J.A. Gerringa, L.; Godoy, J.; Gonzalez, S.; Grossteffan, E.; Hatta, M.; Hayes, C.; Heller, M.; Henderson, G.; Huang, K.; Jeandel, C.; Jenkins, W.; John, S.; Kenna, T.; Klunder, M.; Kretschmer, S.; Kumamoto, Y.; Laan, P.; Labatut, M.; Lacan, F.; Lam, P.; Lannuzel, D.; le Moigne, F.; Lechtenfeld, O.; Lohan, M.; Lu, Y.; Masque, P.; McClain, C.; Measures, C.; Middag, R.; Moffett, J.; Navidad, A.; Nishioka, J.; Noble, A.; Obata, H.; Ohnemus, D.; Owens, S.; Planchon, F.; Pradoux, C.; Puigcorbe, V.; Quay, P.; Radic, A.; Rehkaemper, M.; Remenyi, T.; Rijkenberg, M.; Rintoul, S.; Robinson, L.; Roeske, T.; Rosenberg, M.; van der Loeff, M.; Ryabenko, E.; Saito, M.; Roshan, S.; Salt, L.; Sarthou, G.; Schauer, U.; Scott, P.; Sedwick, P.; Sha, L.; Shiller, A.; Sigman, D.; Smethie, W.; Smith, G.; Sohrin, Y.; Speich, S.; Stichel, T.; Stutsman, J.; Swift, J.; Tagliabue, A.; Thomas, A.; Tsunogai, U.; Twining, B.; Aken, H.; Heuven, S.; Ooijen, J.; Weerlee, E.; Venchiarutti, C.; Voelker, A.; Wake, B.; Warner, M.; Woodward, E.; Wu, J.; Wyatt, N.; Yoshikawa, H.; Zheng, X.; Xue, Z.; Zieringer, M.; Zimmer, L.: The GEOTRACES Intermediate Data Product 2014. Marine Chemistry. 2015. vol. 177 - 1, 1-8. DOI: 10.1016/j.marchem.2015.04.005}} @misc{callies_mean_spring_2015, author={Callies, U.,Scharfe, M.}, title={Mean spring conditions at Helgoland Roads, North Sea: Graphical modeling of the influence of hydro-climatic forcing and Elbe River discharge}, year={2015}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.seares.2014.06.008}, abstract = {We analyze inter-annual changes of marine observations at Helgoland Roads (nitrate, phosphate, salinity, Secchi depth) in relation to hydro-climatic conditions and Elbe River discharge as potential drivers. Focusing on mean spring conditions we explore graphical covariance selection modeling as a means to both identify and represent the structure of parameter interactions.,While river discharge is able to modify spatial distributions and related gradients in the station's vicinity, atmospherically forced regional transport patterns govern the time dependent local conditions the station is actually exposed to. A model consistent with the data confirms the interplay of the two forcing factors for observations at station Helgoland Roads. Introducing water temperature as a third predictor of inter-annual variability does not much improve the model.,Comparing a Helgoland Roads dependence graph with corresponding graphs for other stations or related model simulations, for instance, could help identify differences in underlying mechanisms without referring to specific realizations of external forcing. With regard to prediction, supplementary numerical experiments reveal that imposing constraints on parameter interactions can reduce the chance of fitting regression models to noise.}, note = {Online available at: \url{https://doi.org/10.1016/j.seares.2014.06.008} (DOI). Callies, U.; Scharfe, M.: Mean spring conditions at Helgoland Roads, North Sea: Graphical modeling of the influence of hydro-climatic forcing and Elbe River discharge. Journal of Sea Research. 2015. vol. 101, 1-11. DOI: 10.1016/j.seares.2014.06.008}} @misc{emeis_the_north_2015, author={Emeis, K.,van Beusekom, J.,Callies, U.,Ebinghaus, R.,Kannen, A.,Kraus, G.,Kröncke, I.,Lenhatz, H.,Lorkoswski, I.,Matthias, V.,Möllmann, H.,Pätsch, J.,Scharfe, M.,Thomas, H.,Weisse, R.,Zorita, E.}, title={The North Sea - A shelf sea in the Anthropocene}, year={2015}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.jmarsys.2014.03.012}, abstract = {Global and regional change clearly affects the structure and functioning of ecosystems in shelf seas. However, complex interactions within the shelf seas hinder the identification and unambiguous attribution of observed changes to drivers. These include variability in the climate system, in ocean dynamics, in biogeochemistry, and in shelf sea resource exploitation in the widest sense by societies. Observational time series are commonly too short, and resolution, integration time, and complexity of models are often insufficient to unravel natural variability from anthropogenic perturbation. The North Sea is a shelf sea of the North Atlantic and is impacted by virtually all global and regional developments. Natural variability (from interannual to multidecadal time scales) as response to forcing in the North Atlantic is overlain by global trends (sea level, temperature, acidification) and alternating phases of direct human impacts and attempts to remedy those. Human intervention started some 1000 years ago (diking and associated loss of wetlands), expanded to near-coastal parts in the industrial revolution of the mid-19th century (river management, waste disposal in rivers), and greatly accelerated in the mid-1950s (eutrophication, pollution, fisheries). The North Sea is now a heavily regulated shelf sea, yet societal goals (good environmental status versus increased uses), demands for benefits and policies diverge increasingly. Likely, the southern North Sea will be re-zoned as riparian countries dedicate increasing sea space for offshore wind energy generation — with uncertain consequences for the system's environmental status. We review available observational and model data (predominantly from the southeastern North Sea region) to identify and describe effects of natural variability, of secular changes, and of human impacts on the North Sea ecosystem, and outline developments in the next decades in response to environmental legislation, and in response to increased use of shelf sea space.}, note = {Online available at: \url{https://doi.org/10.1016/j.jmarsys.2014.03.012} (DOI). Emeis, K.; van Beusekom, J.; Callies, U.; Ebinghaus, R.; Kannen, A.; Kraus, G.; Kröncke, I.; Lenhatz, H.; Lorkoswski, I.; Matthias, V.; Möllmann, H.; Pätsch, J.; Scharfe, M.; Thomas, H.; Weisse, R.; Zorita, E.: The North Sea - A shelf sea in the Anthropocene. Journal of Marine Systems. 2015. vol. 141, 18-33. DOI: 10.1016/j.jmarsys.2014.03.012}} @misc{glavovic_living_on_2015, author={Glavovic, B.,Limburg, K.,Liu, K.,Emeis, K.,Thomas, H.,Kremer, H.,Avril, B.,Zhang, J.,Mulholland, M.,Glaser, M.,Swaney, D.}, title={Living on the Margin in the Anthropocene: engagement arenas for sustainability research and action at the ocean–land interface}, year={2015}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.cosust.2015.06.003}, abstract = {The advent of the Anthropocene underscores the need to develop and implement transformative governance strategies that safeguard the Earth's life-support systems, most critically at the ocean–land interface — the Margin. The seaward realm of the Margin is the new frontier for resource exploitation and colonization to meet the needs of coastal nations and humanity overall. Here, we spotlight the pivotal role of the Margin for planetary resilience and sustainability, highlight priority issues, and outline a research strategy which aims to: (a) better understand Margin social-ecological systems; (b) guide sustainable development of Margin resources; (c) design governance regimes to reverse unsustainable practices; (d) facilitate equitable sharing of Margin resources; and (e) evaluate alternative research approaches and partnerships that address major Margin challenges.}, note = {Online available at: \url{https://doi.org/10.1016/j.cosust.2015.06.003} (DOI). Glavovic, B.; Limburg, K.; Liu, K.; Emeis, K.; Thomas, H.; Kremer, H.; Avril, B.; Zhang, J.; Mulholland, M.; Glaser, M.; Swaney, D.: Living on the Margin in the Anthropocene: engagement arenas for sustainability research and action at the ocean–land interface. Current Opinion in Environmental Sustainability. 2015. vol. 14, 232-238. DOI: 10.1016/j.cosust.2015.06.003}} @misc{levin_comparative_biogeochemistryecosystemhuman_2015, author={Levin, L.,Liu, K.,Emeis, K.,Breitburg, D.,Cloern, J.,Deutsch, C.,Giani, M.,Goffart, A.,Hofmann, E.,Lachkar, Z.,Limburg, K.,Liu, S.,Montes, E.,Naqvi, W.,Ragueneau, O.,Rabouille, C.,Sarkar, S.,Swaney, D.,Wassman, P.,Wishner, K.}, title={Comparative biogeochemistry–ecosystem–human interactions on dynamic continental margins}, year={2015}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.jmarsys.2014.04.016}, abstract = {The oceans' continental margins face strong and rapid change, forced by a combination of direct human activity, anthropogenic CO2-induced climate change, and natural variability. Stimulated by discussions in Goa, India at the IMBER IMBIZO III, we (1) provide an overview of the drivers of biogeochemical variation and change on margins, (2) compare temporal trends in hydrographic and biogeochemical data across different margins, (3) review ecosystem responses to these changes, (4) highlight the importance of margin time series for detecting and attributing change and (5) examine societal responses to changing margin biogeochemistry and ecosystems. We synthesize information over a wide range of margin settings in order to identify the commonalities and distinctions among continental margin ecosystems. Key drivers of biogeochemical variation include long-term climate cycles, CO2-induced warming, acidification, and deoxygenation, as well as sea level rise, eutrophication, hydrologic and water cycle alteration, changing land use, fishing, and species invasion. Ecosystem responses are complex and impact major margin services. These include primary production, fisheries production, nutrient cycling, shoreline protection, chemical buffering, and biodiversity. Despite regional differences, the societal consequences of these changes are unarguably large and mandate coherent actions to reduce, mitigate and adapt to multiple stressors on continental margins.}, note = {Online available at: \url{https://doi.org/10.1016/j.jmarsys.2014.04.016} (DOI). Levin, L.; Liu, K.; Emeis, K.; Breitburg, D.; Cloern, J.; Deutsch, C.; Giani, M.; Goffart, A.; Hofmann, E.; Lachkar, Z.; Limburg, K.; Liu, S.; Montes, E.; Naqvi, W.; Ragueneau, O.; Rabouille, C.; Sarkar, S.; Swaney, D.; Wassman, P.; Wishner, K.: Comparative biogeochemistry–ecosystem–human interactions on dynamic continental margins. Journal of Marine Systems. 2015. vol. 141, 3-17. DOI: 10.1016/j.jmarsys.2014.04.016}} @misc{liu_preface__2015, author={Liu, K.,Emeis, K.,Levin, L.,Naqvi, W.,Roman, M.}, title={Preface - “Biogeochemistry–ecosystem interaction on changing continental margins in the Anthropocene”}, year={2015}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.jmarsys.2014.07.020}, note = {Online available at: \url{https://doi.org/10.1016/j.jmarsys.2014.07.020} (DOI). Liu, K.; Emeis, K.; Levin, L.; Naqvi, W.; Roman, M.: Preface - “Biogeochemistry–ecosystem interaction on changing continental margins in the Anthropocene”. Journal of Marine Systems. 2015. vol. 141, 1-2. DOI: 10.1016/j.jmarsys.2014.07.020}} @misc{grimm_late_glacial_2015, author={Grimm, R.,Maier-Reimer, E.,Mikolajewicz, U.,Schmiedel, G.,Müller-Navarra, K.,Adloff, F.,Grant, K.,Ziegler, M.,Lourens, L.,Emeis, K.}, title={Late glacial initiation of Holocene eastern Mediterranean sapropel formation}, year={2015}, howpublished = {journal article}, doi = {https://doi.org/10.1038/ncomms8099}, abstract = {Recurrent deposition of organic-rich sediment layers (sapropels) in the eastern Mediterranean Sea is caused by complex interactions between climatic and biogeochemical processes. Disentangling these influences is therefore important for Mediterranean palaeo-studies in particular, and for understanding ocean feedback processes in general. Crucially, sapropels are diagnostic of anoxic deep-water phases, which have been attributed to deep-water stagnation, enhanced biological production or both. Here we use an ocean-biogeochemical model to test the effects of commonly proposed climatic and biogeochemical causes for sapropel S1. Our results indicate that deep-water anoxia requires a long prelude of deep-water stagnation, with no particularly strong eutrophication. The model-derived time frame agrees with foraminiferal δ13C records that imply cessation of deep-water renewal from at least Heinrich event 1 to the early Holocene. The simulated low particulate organic carbon burial flux agrees with pre-sapropel reconstructions. Our results offer a mechanistic explanation of glacial–interglacial influence on sapropel formation.}, note = {Online available at: \url{https://doi.org/10.1038/ncomms8099} (DOI). Grimm, R.; Maier-Reimer, E.; Mikolajewicz, U.; Schmiedel, G.; Müller-Navarra, K.; Adloff, F.; Grant, K.; Ziegler, M.; Lourens, L.; Emeis, K.: Late glacial initiation of Holocene eastern Mediterranean sapropel formation. Nature Communications. 2015. vol. 6, 7099. DOI: 10.1038/ncomms8099}} @misc{renaud_tipping_points_2014, author={Renaud, F.G.,Friedrich, J.,Sebesvari, Z.,Giosan, L.}, title={Tipping points for delta social-ecological systems}, year={2014}, howpublished = {journal article}, abstract = {Many deltas globally are centers for social and economic development,,so much so that their natural environment has been rapidly transformed over relatively short periods of times. These changes are manifested within the deltas themselves through, for example, land use changes towards intensive,agriculture, but also at the river basin scale through, for example, the development of dams and reservoirs along river systems. In many cases, delta social-ecological systems have,tipped from Holocene characteristics to Anthropocene characteristics,and some deltas could tip to other system states (we refer to them as “collapsed”) which would be unfavorable from an anthropocentric perspective. We discuss this notion,of tipping points in deltas social-ecological systems as well as opportunities to “tip back” to a previous state. We present two examples, the Danube delta which is considered an Anthropocene delta providing many opportunities for sustainable social-ecological system development and the Mekong delta,,another Anthropocene delta where current development decisions,locally and at the basin scale could either increase the resilience of social-ecological systems or tip these systems towards an undesirable state.}, note = {Online available at: \url{} (DOI). Renaud, F.; Friedrich, J.; Sebesvari, Z.; Giosan, L.: Tipping points for delta social-ecological systems. INPRINT / Land-Ocean Interactions in the Coastal Zone. 2014. vol. 1, 5-13.}} @misc{flohr_spatiotemporal_patterns_2014, author={Flohr, A.,van der Plas, A.,Emeis, K.,Mohrholz, V.,Rixen, T.}, title={Spatio-temporal patterns of C : N : P ratios in the northern Benguela upwelling system}, year={2014}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-11-885-2014}, abstract = {On a global scale the ratio of fixed nitrogen (N) and phosphate (P) is characterized by a deficit of N with regard to the classical Redfield ratio of N : P = 16 : 1 reflecting the impact of N loss occurring in the oceanic oxygen minimum zones. The northern Benguela upwelling system (NBUS) is known for losses of N and the accumulation of P in sub- and anoxic bottom waters and sediments of the Namibian shelf resulting in low N : P ratios in the water column. To study the impact of the N : P anomalies on the regional carbon cycle and their consequences for the export of nutrients from the NBUS into the oligotrophic subtropical gyre of the South Atlantic, we measured dissolved inorganic carbon (CT), total alkalinity (AT), oxygen (O2) and nutrient concentrations in February 2011. The results indicate increased P concentrations over the Namibian shelf due to P efflux from sediments resulting in a C : N : P : -O2 ratio of 106 : 16 : 1.6 : 138. N reduction further increase C : N and reduce N : P ratios in those regions where O2 concentrations in bottom waters are < 20 μmol kg−1. However, off the shelf along the continental margin, the mean C : N : P : -O2 ratio is again close to the Redfield stoichiometry. Additional nutrient data measured during two cruises in 2008 and 2009 imply that the amount of excess P, which is created in the bottom waters on the shelf, and its export into the subtropical gyre after upwelling varies through time. The results further reveal an inter-annual variability of excess N within the South Atlantic Central Water (SACW) that flows from the north into the NBUS, with highest N values observed in 2008. It is postulated that the N excess in SACW occurred due to the impact of remineralized organic matter produced by N2 fixation and that the magnitude of excess P formation and its export is governed by inputs of excess N along with SACW flowing into the NBUS. Factors controlling N2 fixation north of the BUS need to be addressed in future studies to better understand the role of the NBUS as a P source and N sink in the coupled C : N : P cycles.}, note = {Online available at: \url{https://doi.org/10.5194/bg-11-885-2014} (DOI). Flohr, A.; van der Plas, A.; Emeis, K.; Mohrholz, V.; Rixen, T.: Spatio-temporal patterns of C : N : P ratios in the northern Benguela upwelling system. Biogeosciences. 2014. vol. 11, no. 3, 885-897. DOI: 10.5194/bg-11-885-2014}} @misc{friedrich_investigating_hypoxia_2014, author={Friedrich, J.,Janssen, F.,Aleynik, D.,Bange, H. W.,Boltacheva, N.,agatay, M. N.,Dale, A. W.,Etiope, G.,Erdem, Z.,Geraga, M.,Gilli, A.,Gomoiu, M. T.,Hall, P. O. J.,Hansson, D.,He, Y.,Holtappels, M.,Kirf, M. K.,Kononets, M.,Konovalov, S.,Lichtschlag, A.,Livingstone, D. M.,Marinaro, G.,Mazlumyan, S.,Naeher, S.,North, R. P.,Papatheodorou, G.,Pfannkuche, O.,Prien, R.,Rehder, G.,Schubert, C. J.,Soltwedel, T.,Sommer, S.,Stahl, H.,Stanev, E. V.,Teaca, A.,Tengberg, A.,Waldmann, C.,Wehrli, B.,Wenzhoefer, F.}, title={Investigating hypoxia in aquatic environments: diverse approaches to addressing a complex phenomenon}, year={2014}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-11-1215-2014}, abstract = {In this paper we provide an overview of new knowledge on oxygen depletion (hypoxia) and related phenomena in aquatic systems resulting from the EU-FP7 project HYPOX ("In situ monitoring of oxygen depletion in hypoxic ecosystems of coastal and open seas, and landlocked water bodies", http://www.hypox.net). In view of the anticipated oxygen loss in aquatic systems due to eutrophication and climate change, HYPOX was set up to improve capacities to monitor hypoxia as well as to understand its causes and consequences.,Temporal dynamics and spatial patterns of hypoxia were analyzed in field studies in various aquatic environments, including the Baltic Sea, the Black Sea, Scottish and Scandinavian fjords, Ionian Sea lagoons and embayments, and Swiss lakes. Examples of episodic and rapid (hours) occurrences of hypoxia, as well as seasonal changes in bottom-water oxygenation in stratified systems, are discussed. Geologically driven hypoxia caused by gas seepage is demonstrated. Using novel technologies, temporal and spatial patterns of water-column oxygenation, from basin-scale seasonal patterns to meter-scale sub-micromolar oxygen distributions, were resolved. Existing multidecadal monitoring data were used to demonstrate the imprint of climate change and eutrophication on long-term oxygen distributions. Organic and inorganic proxies were used to extend investigations on past oxygen conditions to centennial and even longer timescales that cannot be resolved by monitoring. The effects of hypoxia on faunal communities and biogeochemical processes were also addressed in the project. An investigation of benthic fauna is presented as an example of hypoxia-devastated benthic communities that slowly recover upon a reduction in eutrophication in a system where naturally occurring hypoxia overlaps with anthropogenic hypoxia. Biogeochemical investigations reveal that oxygen intrusions have a strong effect on the microbially mediated redox cycling of elements. Observations and modeling studies of the sediments demonstrate the effect of seasonally changing oxygen conditions on benthic mineralization pathways and fluxes. Data quality and access are crucial in hypoxia research. Technical issues are therefore also addressed, including the availability of suitable sensor technology to resolve the gradual changes in bottom-water oxygen in marine systems that can be expected as a result of climate change. Using cabled observatories as examples, we show how the benefit of continuous oxygen monitoring can be maximized by adopting proper quality control. Finally, we discuss strategies for state-of-the-art data archiving and dissemination in compliance with global standards, and how ocean observations can contribute to global earth observation attempts.}, note = {Online available at: \url{https://doi.org/10.5194/bg-11-1215-2014} (DOI). Friedrich, J.; Janssen, F.; Aleynik, D.; Bange, H.; Boltacheva, N.; agatay, M.; Dale, A.; Etiope, G.; Erdem, Z.; Geraga, M.; Gilli, A.; Gomoiu, M.; Hall, P.; Hansson, D.; He, Y.; Holtappels, M.; Kirf, M.; Kononets, M.; Konovalov, S.; Lichtschlag, A.; Livingstone, D.; Marinaro, G.; Mazlumyan, S.; Naeher, S.; North, R.; Papatheodorou, G.; Pfannkuche, O.; Prien, R.; Rehder, G.; Schubert, C.; Soltwedel, T.; Sommer, S.; Stahl, H.; Stanev, E.; Teaca, A.; Tengberg, A.; Waldmann, C.; Wehrli, B.; Wenzhoefer, F.: Investigating hypoxia in aquatic environments: diverse approaches to addressing a complex phenomenon. Biogeosciences. 2014. vol. 11, 1215-1259. DOI: 10.5194/bg-11-1215-2014}} @misc{winter_wissenachftliche_konzepte_2014, author={Winter, C.,Herrling, G.,Bartholomae, A.,Capperucci, R.,Callies, U.,Heipke, C.,Schmidt, A.,Hillebrand, H.,Reimers, C.,Bremer, P.,Weiler, R.}, title={Wissenachftliche Konzepte fuer ein Monitoring des oekologischen Zustands des deutschen Kuestenmeeres}, year={2014}, howpublished = {journal article}, abstract = {Aussagen zum Zustand und der Entwicklung von Kuestenmeeren koennen nur durch langfristige Beobachtungen und Modellansaetze erfolgen. Im Verbundprojekt ....}, note = {Online available at: \url{} (DOI). Winter, C.; Herrling, G.; Bartholomae, A.; Capperucci, R.; Callies, U.; Heipke, C.; Schmidt, A.; Hillebrand, H.; Reimers, C.; Bremer, P.; Weiler, R.: Wissenachftliche Konzepte fuer ein Monitoring des oekologischen Zustands des deutschen Kuestenmeeres. Wasser und Abfall. 2014. no. 7-8, 21-26.}} @misc{neumann_marine_litter_2014, author={Neumann, D.,Callies, U.,Matthies, M.}, title={Marine litter ensemble transport simulations in the southern North Sea}, year={2014}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.marpolbul.2014.07.016}, abstract = {The drift of marine litter in the southern North Sea was simulated with the offline Lagrangian transport model PELETS-2D. Assuming different source regions, passive tracer particles were released every 28 h within a nine-year period. Based on pre-calculated hourly wind and ocean current data, drift simulations were carried out forward and backward in time with and without the assumption of extra wind forces influencing particle movement. Due to strong variability of currents, backward simulations did not allow for the identification of particular source regions influencing given monitoring sites. Neither accumulation regions at open sea could be identified by forward simulations. A seasonal signal, however, could be identified in the number of tracer particles that reached the coastal areas. Both particle drift velocity and variability of drift paths further increased when an extra wind drift was assumed.}, note = {Online available at: \url{https://doi.org/10.1016/j.marpolbul.2014.07.016} (DOI). Neumann, D.; Callies, U.; Matthies, M.: Marine litter ensemble transport simulations in the southern North Sea. Marine Pollution Bulletin. 2014. vol. 86, no. 1-2, 219-228. DOI: 10.1016/j.marpolbul.2014.07.016}} @misc{dhnke_nitrogen_isotope_2013, author={Dähnke, K.,Thamdrup, B.}, title={Nitrogen isotope dynamics and fractionation during sedimentary denitrification in Boknis Eck, Baltic Sea}, year={2013}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-10-3079-2013}, abstract = {The global marine nitrogen cycle is constrained by nitrogen fixation as a source of reactive nitrogen, and denitrification or anammox on the sink side. These processes with their respective isotope effects set the marine nitrate 15N-isotope value (δ15N) to a relatively constant average of 5‰. This value can be used to better assess the magnitude of these sources and sink terms, but the underlying assumption is that sedimentary denitrification and anammox, processes responsible for approximately one-third of global nitrogen removal, have little to no isotope effect on nitrate in the water column.,We investigated the isotope fractionation in sediment incubations, measuring net denitrification and nitrogen and oxygen stable isotope fractionation in surface sediments from the coastal Baltic Sea (Boknis Eck, northern Germany), a site with seasonal hypoxia and dynamic nitrogen turnover.,Sediment denitrification was fast, and regardless of current paradigms assuming little fractionation during sediment denitrification, we measured fractionation factors of 18.9‰ for nitrogen and 15.8‰ for oxygen in nitrate. While the input of nitrate to the water column remains speculative, these results challenge the current view of fractionation during sedimentary denitrification and imply that nitrogen budget calculations may need to consider this variability, as both preferential uptake of light nitrate and release of the remaining heavy fraction can significantly alter water column nitrate isotope values at the sediment–water interface.}, note = {Online available at: \url{https://doi.org/10.5194/bg-10-3079-2013} (DOI). Dähnke, K.; Thamdrup, B.: Nitrogen isotope dynamics and fractionation during sedimentary denitrification in Boknis Eck, Baltic Sea. Biogeosciences. 2013. vol. 10, no. 5, 3079-3088. DOI: 10.5194/bg-10-3079-2013}} @misc{renaud_tipping_from_2013, author={Renaud, F.G.,Syvitski, J.P.M.,Sebesvari, Z.,Werners, S.E.,Kremer, H.,Kuenzer, C.,Ramesh, R.,Jeuken, A.,Friedrich, J.}, title={Tipping from the Holocene to the Anthropocene: How threatened are major world deltas?}, year={2013}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.cosust.2013.11.007}, abstract = {Coastal deltas are landforms that typically offer a wide variety of benefits to society including highly fertile soils for agricultural development, freshwater resources, and rich biodiversity. For these reasons, many deltas are densely populated, are important economic hubs, and have been transformed by human interventions such as agricultural intensification, modification of water and sediment fluxes, as well as urbanization and industrialization. Additionally, deltas are increasingly affected by the consequences of climate change including sea level rise, and by other natural hazards such as cyclones and storm surges. Five examples of major deltas (Rhine-Meuse, Ganges, Indus, Mekong, and Danube) illustrate the force of human interventions in shaping and transforming deltas and in inducing shifts between four different social-ecological system (SES) states: Holocene, modified Holocene, Anthropocene and ‘collapsed’. The three Asian deltas are rapidly changing but whereas SES in the Ganges and Indus deltas are in danger of tipping into a ‘collapsed’ state, SES in the Mekong delta, which is at the crossroads of various development pathways, could increase in resilience in the future. The Rhine-Meuse and Danube delta examples show that highly managed states may allow, under specific conditions, for interventions leading to increasingly resilient systems. However, little is known about the long-term effects of rapid human interventions in deltas. It is therefore critical to increase the knowledge-base related to SES dynamics and to better characterize social tipping points or turning points in order to avoid unacceptable changes.}, note = {Online available at: \url{https://doi.org/10.1016/j.cosust.2013.11.007} (DOI). Renaud, F.; Syvitski, J.; Sebesvari, Z.; Werners, S.; Kremer, H.; Kuenzer, C.; Ramesh, R.; Jeuken, A.; Friedrich, J.: Tipping from the Holocene to the Anthropocene: How threatened are major world deltas?. Current Opinion in Environmental Sustainability. 2013. vol. 5, no. 6, 644-654. DOI: 10.1016/j.cosust.2013.11.007}} @misc{teeling_substratecontrolled_succession_2012, author={Teeling, H.,Fuchs, B.M.,Becher, D.,Klockow, C.,Gardebrecht, A.,Bennke, C.M.,Kassabgy, M.,Huang, S.,Mann, A.J.,Waldmann, J.,Weber, M.,Klindworth, A.,Otto, A.,Lange, J.,Bernhardt, J.,Reinsch, C.,Hecker, M.,Peplies, J.,Bockelmann, F.D.,Callies, U.,Gerdts, G.,Wichels, A.,Wiltshire, K.H.,Gloeckner, F.O.,Schweder, T.,Amann, R.}, title={Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom}, year={2012}, howpublished = {journal article}, doi = {https://doi.org/10.1126/science.1218344}, abstract = {Phytoplankton blooms characterize temperate ocean margin zones in spring. We investigated the bacterioplankton response to a diatom bloom in the North Sea and observed a dynamic succession of populations at genus-level resolution. Taxonomically distinct expressions of carbohydrate-active enzymes (transporters; in particular, TonB-dependent transporters) and phosphate acquisition strategies were found, indicating that distinct populations of Bacteroidetes, Gammaproteobacteria, and Alphaproteobacteria are specialized for successive decomposition of algal-derived organic matter. Our results suggest that algal substrate availability provided a series of ecological niches in which specialized populations could bloom. This reveals how planktonic species, despite their seemingly homogeneous habitat, can evade extinction by direct competition.}, note = {Online available at: \url{https://doi.org/10.1126/science.1218344} (DOI). Teeling, H.; Fuchs, B.; Becher, D.; Klockow, C.; Gardebrecht, A.; Bennke, C.; Kassabgy, M.; Huang, S.; Mann, A.; Waldmann, J.; Weber, M.; Klindworth, A.; Otto, A.; Lange, J.; Bernhardt, J.; Reinsch, C.; Hecker, M.; Peplies, J.; Bockelmann, F.; Callies, U.; Gerdts, G.; Wichels, A.; Wiltshire, K.; Gloeckner, F.; Schweder, T.; Amann, R.: Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom. Science. 2012. vol. 336, no. 6081, 608-611. DOI: 10.1126/science.1218344}} @misc{swaney_five_critical_2012, author={Swaney, D.P.,Humborg, C.,Emeis, K.,Kannen, A.,Silvert, W.,Tett, P.,Pastres, R.,Solidoro, C.,Yamamuro, M.,Henocque, Y.,Nicholls, R.}, title={Five critical questions of scale for the coastal zone}, year={2012}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.ecss.2011.04.010}, abstract = {Social and ecological systems around the world are becoming increasingly globalized. From the standpoint of understanding coastal ecosystem behavior, system boundaries are not sufficient to define causes of change. A flutter in the stock market in Tokyo or Hong Kong can affect salmon producers in Norway or farmers in Togo. The globalization of opportunistic species and the disempowerment of people trying to manage their own affairs on a local scale seem to coincide with the globalization of trade. Human-accelerated environmental change, including climate change, can exacerbate this sense of disenfranchisement. The structure and functioning of coastal ecosystems have been developed over thousands of years subject to environmental forces and constraints imposed mainly on local scales. However, phenomena that transcend these conventional scales have emerged with the explosion of human population, and especially with the rise of modern global culture. Here, we examine five broad questions of scale in the coastal zone:,(1) How big are coastal ecosystems and why should we care?,(2) Temporal scales of change in coastal waters and watersheds: Can we detect shifting baselines due to economic development and other drivers?,(3) Are footprints more important than boundaries?,(4) What makes a decision big? The tyranny of small decisions in coastal regions.,(5) Scales of complexity in coastal waters: the simple, the complicated or the complex?,These questions do not have straightforward answers. There is no single “scale” for coastal ecosystems; their multiscale nature complicates our understanding and management of them. Coastal ecosystems depend on their watersheds as well as spatially-diffuse “footprints” associated with modern trade and material flows. Change occurs both rapidly and slowly on human time scales, and observing and responding to changes in coastal environments is a fundamental challenge. Apparently small human decisions collectively have potentially enormous consequences for coastal environmental quality, and our success in managing the effects of these decisions will determine the quality of life in the coastal zone in the 21st century and beyond. Vigilant monitoring, creative synthesis of information, and continued research will be necessary to properly understand and govern our coastal environments into the future.}, note = {Online available at: \url{https://doi.org/10.1016/j.ecss.2011.04.010} (DOI). Swaney, D.; Humborg, C.; Emeis, K.; Kannen, A.; Silvert, W.; Tett, P.; Pastres, R.; Solidoro, C.; Yamamuro, M.; Henocque, Y.; Nicholls, R.: Five critical questions of scale for the coastal zone. Estuarine, Coastal and Shelf Science. 2012. vol. 96, 9-21. DOI: 10.1016/j.ecss.2011.04.010}} @misc{dhnke_balance_of_2012, author={Dähnke, K.,Moneta, A.,Veuger, B.,Soetaert, K.,Middelburg, J.J.}, title={Balance of assimilative and dissimilative nitrogen processes in a diatom-rich tidal flat sediment}, year={2012}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-9-4059-2012}, abstract = {Tidal flat sediments are subject to repetitive mixing and resuspension events. In a short-term (24 h) 15N-labelling experiment, we investigated reactive nitrogen cycling in a tidal flat sediment following an experimentally induced resuspension event. We focused on (a) the relative importance of assimilatory versus dissimilatory processes and (b) the role of benthic microalgae therein. 15N-labelled substrate was added to homogenized sediment, and 15N was subsequently traced into sediment and dissolved inorganic nitrogen (DIN) pools. Integration of results in a N-cycle model allowed us to quantify the proportion of major assimilatory and dissimilatory processes in the sediment.,Upon sediment disturbance, rates of dissimilatory processes like nitrification and denitrification were very high, but declined rapidly towards a steady state. Once this was reached, the balance between assimilation and dissimilation in this tidal mudflat was mainly dependent on the nitrogen source: nitrate was utilized almost exclusively dissimilatory via denitrification, whereas ammonium was rapidly assimilated, with about a quarter of this assimilation due to benthic microalgae (BMA). Benthic microalgae significantly affected the nitrogen recycling balance in sediments, because in the absence of BMA activity the recovering sediment turned from a net ammonium sink to a net source.,The driving mechanisms for assimilation or dissimilation accordingly appear to be ruled to a large extent by external physical forcing, with the entire system being capable of rapid shifts following environmental changes. Assimilatory pathways gain importance under stable conditions, with a substantial contribution of BMA to total assimilation.}, note = {Online available at: \url{https://doi.org/10.5194/bg-9-4059-2012} (DOI). Dähnke, K.; Moneta, A.; Veuger, B.; Soetaert, K.; Middelburg, J.: Balance of assimilative and dissimilative nitrogen processes in a diatom-rich tidal flat sediment. Biogeosciences. 2012. vol. 9, no. 10, 4059-4070. DOI: 10.5194/bg-9-4059-2012}} @misc{church_intercalibration_studies_2012, author={Church, T.,Rigaud, S.,Baskaran, M.,Kumar, A.,Friedrich, J.,Masque, P.,Puigcorbe, V.,Kim, G.,Radakovitch, O.,Hong, G.,Choi, H.,Stewart, G.}, title={Intercalibration studies of 210Po and 210Pb in dissolved and particulate seawater samples}, year={2012}, howpublished = {journal article}, doi = {https://doi.org/10.4319/lom.2012.10.776}, abstract = {Documented is an intercalibration (IC) exercise for both 210Po and 210Pb in seawater aliquots distributed between up to eight international laboratories that followed individual protocols. Dissolved and particulate samples were provided by GEOTRACES during two IC cruises at baseline stations in the North Atlantic and North Pacific oceans. Included were surface and/or deep dissolved and particulate samples at each site, plus complete profiles analyzed by the laboratory of the lead author. An unspecified solid phase standard was also distributed with 210Po and 210Pb in secular equilibrium to confirm spike calibrations. The 210Po activities reported n = 8) for the standard were very similar with a relative standard deviation (RSD) of 3.6% and mean value indistinguishable from the certified value, confirming accurate calibration of Po spikes. For seawater samples, the agreement was strongly dependent for both nuclides on the activity of the samples. The agreement was relatively good for dissolved seawater samples (RSD = 9% to 29%, n = 4), moderate for the particulate samples (RSD = 12% to 80%, n = 8), and poor for particulate dip blanks (RSD = 50% to 200%, n = 8). Noted is the higher apparent affinity of 210Po versus 210Pb for polysulphone filter material. Some lack of reproducibility between labs may have been caused by unspecified differences in individual lab protocols and calculations. A minimum sample activity of 0.1 dpm for both nuclides is recommended for an adequate reproducible sample activity. It is suggested that a consistent set of procedures and calculations be used to optimize future 210Po and 210Pb analyses in seawater samples.}, note = {Online available at: \url{https://doi.org/10.4319/lom.2012.10.776} (DOI). Church, T.; Rigaud, S.; Baskaran, M.; Kumar, A.; Friedrich, J.; Masque, P.; Puigcorbe, V.; Kim, G.; Radakovitch, O.; Hong, G.; Choi, H.; Stewart, G.: Intercalibration studies of 210Po and 210Pb in dissolved and particulate seawater samples. Limnology and Oceanography: Methods. 2012. vol. 10, no. 10, 776-789. DOI: 10.4319/lom.2012.10.776}} @misc{schlarbaum_dissolved_and_2011, author={Schlarbaum, T.,Daehnke, K.,Emeis, K.}, title={Dissolved and particulate reactive nitrogen in the Elbe River/NW Europe: a 2-yr N-isotope study}, year={2011}, howpublished = {journal article}, doi = {https://doi.org/10.5194/bg-8-3519-2011}, abstract = {Rivers collect and transport reactive nitrogen to coastal seas as nitrate, ammonium, dissolved organic nitrogen (DON), or particulate nitrogen. DON is an important component of reactive nitrogen in rivers and is suspected to contribute to coastal eutrophication, but little is known about seasonality of DON loads and turnover within rivers. We measured the concentrations and the isotope ratios 15N/14N of combined DON + NH4+ (δ15DON + NH4+), nitrate (δ15N − NO3−) and particulate nitrogen (δ15PN) in the non-tidal Elbe River (SE North Sea, NW Europe) over a period of 2 yr (June 2005 to December 2007) at monthly resolution. Combined DON + NH4+ concentrations ranged from 22 to 75 μM and comprised nearly 23% of total dissolved nitrogen in the Elbe River in annual mean; PN and nitrate concentrations ranged from 11 to 127 μM, and 33 to 422 μM, respectively. Combined PN and DON + NH4+ concentrations were, to a first approximation, inversely correlated to nitrate concentrations. δ15DON + NH4+, which varied between from 0.8‰ to 11.5‰, changed in parallel to δ15PN (range 6 to 10‰), and both were anti-correlated to δ15N − NO3− (range 6 to 23‰). Seasonal patterns of DON + NH4+ concentrations and δ15DON + NH4+ diverge from those expected from biological DON + NH4+ production in the river alone and suggest that the elution of organic fertilisers significantly affects the DON + NH4+ pool in the Elbe River.}, note = {Online available at: \url{https://doi.org/10.5194/bg-8-3519-2011} (DOI). Schlarbaum, T.; Daehnke, K.; Emeis, K.: Dissolved and particulate reactive nitrogen in the Elbe River/NW Europe: a 2-yr N-isotope study. Biogeosciences. 2011. vol. 8, no. 12, 3519-3530. DOI: 10.5194/bg-8-3519-2011}} @misc{callies_particle_tracking_2011, author={Callies, U.,Pluess, A.,Kappenberg, J.,Kapitza, H.}, title={Particle tracking in the vicinity of Helgoland, North Sea: A model comparison}, year={2011}, howpublished = {journal article}, doi = {https://doi.org/10.1007/s10236-011-0474-8}, abstract = {Station Helgoland Roads in the south-eastern North Sea (German Bight) hosts one of the richest longterm time series of marine observations. Hydrodynamic transport simulations can help understand variability in the local data brought about by intermittent changes of water masses. The objective of our study is to estimate to which extent the outcome of such transport simulations depends on the choice of a specific hydrodynamic model. Our basic experiment consists of 3,377 Lagrangian simulations,in time-reversed mode initialized every 7 h within the period Feb 2002–Oct 2004. Fifty-day backward,simulations were performed based on hourly current fields from four different hydrodynamic models that are all well established but differ with regard to spatial resolution, dimensionality (2D or 3D), the origin of atmospheric forcing data, treatment of boundary conditions, presence or absence of baroclinic terms, and the numerical scheme.,The particle-tracking algorithm is 2D; fields from 3D models were averaged vertically. Drift simulations were evaluated quantitatively in terms of the fraction of released particles that crossed each cell of a network of receptor regions centred at the island of Helgoland. We found,substantial systematic differences between drift simulations based on each of the four hydrodynamic models. Sensitivity studies with regard to spatial resolution and the effects of baroclinic processes suggest that differences in model output cannot unambiguously be assigned to certain model properties or restrictions. Therefore, multi-model simulations are needed for a proper identification of uncertainties in long-term Lagrangian drift simulations.}, note = {Online available at: \url{https://doi.org/10.1007/s10236-011-0474-8} (DOI). Callies, U.; Pluess, A.; Kappenberg, J.; Kapitza, H.: Particle tracking in the vicinity of Helgoland, North Sea: A model comparison. Ocean Dynamics. 2011. vol. 61, no. 12, 2121-2139. DOI: 10.1007/s10236-011-0474-8}} @misc{schlarbaum_turnover_of_2010, author={Schlarbaum, T.,Daehnke, K.,Emeis, K.}, title={Turnover of combined dissolved organic nitrogen and ammonium in the Elbe estuary/NW Europe: Results of nitrogen isotope investigations}, year={2010}, howpublished = {journal article}, doi = {https://doi.org/10.1016/j.marchem.2009.12.007}, abstract = {Dissolved organic nitrogen (DON) is often the dominant form of reactive nitrogen transported from land to sea by rivers, but is considered to be largely recalcitrant and behaves conservatively in many estuaries. We measured the concentration and the isotope ratio δ15N of combined DON and ammonium (δ15DON + NH4+) in the Elbe River estuary (SE North Sea, NW Europe) by a combination of a modified persulfate digestion and the denitrifier method. Measurements were made on samples taken along the salinity gradient from 1 to 32 during different seasons, in order to gauge the effects of internal biological processes and external signatures (such as pollution). Combined DON and ammonium concentrations ranged from 20 to 60 µM, and δ15DON + NH4+ from 0 to 11‰. The results show that DON + NH4+ contributes < 20% to total reactive nitrogen in the river end member and rises to 50% in the outer estuary. By comparison with older data, the DON load in the Elbe River did not change since the 1980s, when nitrate and phosphate pollution was maximal. We find evidence that DON and/or ammonium or reactive components in DON are both consumed and produced in the estuary, indicated by changing isotope ratios and non-conservative mixing gradients. The estuarine turbidity maximum zone (TMZ) at salinities < 5, which today is a significant source of nitrate from nitrification, coincides with significantly decreased DON + NH4+ concentrations and δ15DON + NH4+ in all seasons sampled. Whether this is due to selective absorption/desorption of 15N enriched moieties onto particle surfaces, or to selective heterotrophic assimilation and nitrification is yet unclear, and the loss of DON + NH4+ does not balance the added nitrate. Because DON + NH4+ concentrations and δ15DON + NH4+ rise sharply seaward of the TMZ, we consider adsorption/desorption processes most likely. In the salinity gradient 5 to 30, DON + NH4+ behaves conservatively in both concentration and isotopic composition.}, note = {Online available at: \url{https://doi.org/10.1016/j.marchem.2009.12.007} (DOI). Schlarbaum, T.; Daehnke, K.; Emeis, K.: Turnover of combined dissolved organic nitrogen and ammonium in the Elbe estuary/NW Europe: Results of nitrogen isotope investigations. Marine Chemistry. 2010. vol. 119, no. 1-4, 91-107. DOI: 10.1016/j.marchem.2009.12.007}}